## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[KO-N4371-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.sort.bam] OUTPUT=KO-N4371-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.bam METRICS_FILE=KO-N4371-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Apr 14 14:59:16 PDT 2018

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	18344492	0	0	2729285	2024223	0.14878	183404745

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.117943
2.0	2.129477
3.0	3.04473
4.0	3.872868
5.0	4.622182
6.0	5.300174
7.0	5.913633
8.0	6.468702
9.0	6.970938
10.0	7.42537
11.0	7.836548
12.0	8.208589
13.0	8.545218
14.0	8.849806
15.0	9.125403
16.0	9.374768
17.0	9.600398
18.0	9.804551
19.0	9.989273
20.0	10.156413
21.0	10.307643
22.0	10.44448
23.0	10.568291
24.0	10.680319
25.0	10.781683
26.0	10.873399
27.0	10.956385
28.0	11.031473
29.0	11.099413
30.0	11.160887
31.0	11.216509
32.0	11.266838
33.0	11.312376
34.0	11.353579
35.0	11.390861
36.0	11.424594
37.0	11.455116
38.0	11.482733
39.0	11.507721
40.0	11.530331
41.0	11.550789
42.0	11.5693
43.0	11.586049
44.0	11.601203
45.0	11.614915
46.0	11.627322
47.0	11.638549
48.0	11.648706
49.0	11.657897
50.0	11.666213
51.0	11.673737
52.0	11.680545
53.0	11.686705
54.0	11.692279
55.0	11.697323
56.0	11.701886
57.0	11.706015
58.0	11.709751
59.0	11.713131
60.0	11.71619
61.0	11.718957
62.0	11.721461
63.0	11.723727
64.0	11.725777
65.0	11.727632
66.0	11.72931
67.0	11.730829
68.0	11.732203
69.0	11.733446
70.0	11.734571
71.0	11.735589
72.0	11.73651
73.0	11.737343
74.0	11.738097
75.0	11.73878
76.0	11.739397
77.0	11.739955
78.0	11.740461
79.0	11.740918
80.0	11.741332
81.0	11.741706
82.0	11.742045
83.0	11.742351
84.0	11.742629
85.0	11.74288
86.0	11.743107
87.0	11.743312
88.0	11.743498
89.0	11.743666
90.0	11.743818
91.0	11.743956
92.0	11.744081
93.0	11.744193
94.0	11.744295
95.0	11.744388
96.0	11.744471
97.0	11.744547
98.0	11.744615
99.0	11.744677
100.0	11.744733