## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[KO-N4293-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.sort.bam] OUTPUT=KO-N4293-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.bam METRICS_FILE=KO-N4293-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Apr 14 14:59:16 PDT 2018

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	17578895	0	0	2528895	1819980	0.14386	169864059

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.109626
2.0	2.110162
3.0	3.012331
4.0	3.825806
5.0	4.559305
6.0	5.220691
7.0	5.817055
8.0	6.354788
9.0	6.839655
10.0	7.276853
11.0	7.671069
12.0	8.026528
13.0	8.34704
14.0	8.636043
15.0	8.896632
16.0	9.131602
17.0	9.343472
18.0	9.534512
19.0	9.70677
20.0	9.862093
21.0	10.002145
22.0	10.128429
23.0	10.242297
24.0	10.344971
25.0	10.43755
26.0	10.521027
27.0	10.596298
28.0	10.664169
29.0	10.725367
30.0	10.780548
31.0	10.830304
32.0	10.875169
33.0	10.915623
34.0	10.9521
35.0	10.98499
36.0	11.014647
37.0	11.041388
38.0	11.065501
39.0	11.087242
40.0	11.106847
41.0	11.124524
42.0	11.140463
43.0	11.154835
44.0	11.167794
45.0	11.179479
46.0	11.190015
47.0	11.199515
48.0	11.208082
49.0	11.215806
50.0	11.22277
51.0	11.229051
52.0	11.234713
53.0	11.239819
54.0	11.244423
55.0	11.248574
56.0	11.252318
57.0	11.255693
58.0	11.258736
59.0	11.26148
60.0	11.263955
61.0	11.266186
62.0	11.268197
63.0	11.270011
64.0	11.271647
65.0	11.273122
66.0	11.274452
67.0	11.275651
68.0	11.276732
69.0	11.277707
70.0	11.278586
71.0	11.279379
72.0	11.280093
73.0	11.280738
74.0	11.281319
75.0	11.281843
76.0	11.282315
77.0	11.282741
78.0	11.283125
79.0	11.283472
80.0	11.283784
81.0	11.284066
82.0	11.28432
83.0	11.284549
84.0	11.284755
85.0	11.284941
86.0	11.285109
87.0	11.28526
88.0	11.285397
89.0	11.28552
90.0	11.285631
91.0	11.285731
92.0	11.285821
93.0	11.285902
94.0	11.285976
95.0	11.286042
96.0	11.286102
97.0	11.286155
98.0	11.286204
99.0	11.286247
100.0	11.286287