## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[KO-13006-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.sort.bam] OUTPUT=KO-13006-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.bam METRICS_FILE=KO-13006-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Apr 14 14:59:16 PDT 2018

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	12166939	0	0	1550061	1252520	0.127399	196526811

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.111246
2.0	2.155782
3.0	3.137611
4.0	4.060499
5.0	4.927984
6.0	5.743392
7.0	6.509849
8.0	7.230294
9.0	7.907489
10.0	8.54403
11.0	9.142358
12.0	9.704767
13.0	10.233413
14.0	10.730324
15.0	11.197403
16.0	11.636443
17.0	12.049126
18.0	12.437035
19.0	12.801657
20.0	13.14439
21.0	13.466548
22.0	13.769365
23.0	14.054004
24.0	14.321556
25.0	14.573045
26.0	14.809437
27.0	15.031638
28.0	15.2405
29.0	15.436823
30.0	15.621361
31.0	15.79482
32.0	15.957866
33.0	16.111124
34.0	16.255182
35.0	16.390591
36.0	16.517872
37.0	16.637512
38.0	16.749969
39.0	16.855675
40.0	16.955036
41.0	17.048431
42.0	17.13622
43.0	17.218739
44.0	17.296304
45.0	17.369212
46.0	17.437744
47.0	17.502162
48.0	17.562712
49.0	17.619627
50.0	17.673126
51.0	17.723413
52.0	17.770681
53.0	17.815112
54.0	17.856875
55.0	17.896131
56.0	17.933031
57.0	17.967715
58.0	18.000317
59.0	18.030962
60.0	18.059767
61.0	18.086843
62.0	18.112294
63.0	18.136217
64.0	18.158703
65.0	18.17984
66.0	18.199708
67.0	18.218383
68.0	18.235937
69.0	18.252437
70.0	18.267946
71.0	18.282525
72.0	18.296228
73.0	18.309109
74.0	18.321217
75.0	18.332597
76.0	18.343295
77.0	18.35335
78.0	18.362801
79.0	18.371685
80.0	18.380036
81.0	18.387886
82.0	18.395264
83.0	18.402199
84.0	18.408719
85.0	18.414846
86.0	18.420606
87.0	18.42602
88.0	18.431109
89.0	18.435893
90.0	18.440389
91.0	18.444615
92.0	18.448588
93.0	18.452322
94.0	18.455832
95.0	18.459131
96.0	18.462233
97.0	18.465148
98.0	18.467888
99.0	18.470463
100.0	18.472884