## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[KO-13006-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.sort.bam] OUTPUT=KO-13006-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.bam METRICS_FILE=KO-13006-1.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Apr 14 14:59:16 PDT 2018

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	15509775	0	0	1920076	1427746	0.123798	196671024

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.097447
2.0	2.111673
3.0	3.048987
4.0	3.915223
5.0	4.715771
6.0	5.455611
7.0	6.139348
8.0	6.771236
9.0	7.355206
10.0	7.894892
11.0	8.393653
12.0	8.854592
13.0	9.280577
14.0	9.674258
15.0	10.038086
16.0	10.374324
17.0	10.685065
18.0	10.972241
19.0	11.23764
20.0	11.482913
21.0	11.709587
22.0	11.919072
23.0	12.112671
24.0	12.291589
25.0	12.456939
26.0	12.60975
27.0	12.750973
28.0	12.881488
29.0	13.002104
30.0	13.113575
31.0	13.216592
32.0	13.311797
33.0	13.399783
34.0	13.481096
35.0	13.556244
36.0	13.625692
37.0	13.689875
38.0	13.74919
39.0	13.804007
40.0	13.854668
41.0	13.901486
42.0	13.944754
43.0	13.984742
44.0	14.021696
45.0	14.055849
46.0	14.087412
47.0	14.116581
48.0	14.143538
49.0	14.168451
50.0	14.191475
51.0	14.212753
52.0	14.232417
53.0	14.25059
54.0	14.267385
55.0	14.282906
56.0	14.297251
57.0	14.310507
58.0	14.322759
59.0	14.334081
60.0	14.344545
61.0	14.354215
62.0	14.363152
63.0	14.371411
64.0	14.379044
65.0	14.386098
66.0	14.392617
67.0	14.398642
68.0	14.40421
69.0	14.409356
70.0	14.414111
71.0	14.418506
72.0	14.422568
73.0	14.426321
74.0	14.42979
75.0	14.432996
76.0	14.435959
77.0	14.438697
78.0	14.441227
79.0	14.443566
80.0	14.445727
81.0	14.447724
82.0	14.44957
83.0	14.451276
84.0	14.452853
85.0	14.45431
86.0	14.455656
87.0	14.456901
88.0	14.458051
89.0	14.459114
90.0	14.460096
91.0	14.461004
92.0	14.461842
93.0	14.462618
94.0	14.463334
95.0	14.463996
96.0	14.464608
97.0	14.465174
98.0	14.465697
99.0	14.46618
100.0	14.466626