SUMMARISING RUN PARAMETERS
==========================
Input filename: A-N4293-2.end1.fastq.gz
Trimming mode: paired-end
Trim Galore version: 0.4.4
Cutadapt version: 1.16
Quality Phred score cutoff: 20
Quality encoding type selected: ASCII+33
Adapter sequence: 'CTGTCTCTTATA' (Nextera Transposase sequence; auto-detected)
Maximum trimming error rate: 0.1 (default)
Minimum required adapter overlap (stringency): 1 bp
Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp
All sequences will be trimmed by 1 bp on their 3' end to avoid problems with invalid paired-end alignments with Bowtie 1
Output file will be GZIP compressed


This is cutadapt 1.16 with Python 2.7.13
Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA A-N4293-2.end1.fastq.gz
Running on 1 core
Trimming 1 adapter with at most 10.0% errors in single-end mode ...
Finished in 974.34 s (36 us/read; 1.66 M reads/minute).

=== Summary ===

Total reads processed:              27,006,792
Reads with adapters:                10,577,843 (39.2%)
Reads written (passing filters):    27,006,792 (100.0%)

Total basepairs processed: 1,741,468,989 bp
Quality-trimmed:                  15,694 bp (0.0%)
Total written (filtered):  1,723,264,049 bp (99.0%)

=== Adapter 1 ===

Sequence: CTGTCTCTTATA; Type: regular 3'; Length: 12; Trimmed: 10577843 times.

No. of allowed errors:
0-9 bp: 0; 10-12 bp: 1

Bases preceding removed adapters:
  A: 26.9%
  C: 27.5%
  G: 23.2%
  T: 22.4%
  none/other: 0.0%

Overview of removed sequences
length	count	expect	max.err	error counts
1	8221534	6751698.0	0	8221534
2	1593027	1687924.5	0	1593027
3	451502	421981.1	0	451502
4	99725	105495.3	0	99725
5	25984	26373.8	0	25984
6	14552	6593.5	0	14552
7	5148	1648.4	0	5148
8	3752	412.1	0	3752
9	3713	103.0	0	2918 795
10	3735	25.8	1	2532 1203
11	4145	6.4	1	2733 1412
12	3467	1.6	1	2800 667
13	3470	1.6	1	2881 589
14	3830	1.6	1	2558 1272
15	3436	1.6	1	2322 1114
16	2920	1.6	1	2295 625
17	2816	1.6	1	2285 531
18	3011	1.6	1	2768 243
19	3480	1.6	1	3061 419
20	3864	1.6	1	3392 472
21	4065	1.6	1	3836 229
22	5126	1.6	1	4119 1007
23	5328	1.6	1	5016 312
24	5189	1.6	1	4885 304
25	4395	1.6	1	4163 232
26	3707	1.6	1	3461 246
27	3604	1.6	1	3221 383
28	3886	1.6	1	3546 340
29	4652	1.6	1	4280 372
30	5125	1.6	1	4867 258
31	5283	1.6	1	5040 243
32	5623	1.6	1	5393 230
33	7214	1.6	1	6859 355
34	7943	1.6	1	7698 245
35	7023	1.6	1	6787 236
36	5603	1.6	1	5336 267
37	4816	1.6	1	4590 226
38	5057	1.6	1	4763 294
39	4725	1.6	1	4471 254
40	3223	1.6	1	2980 243
41	1823	1.6	1	1647 176
42	1074	1.6	1	921 153
43	1350	1.6	1	796 554
44	559	1.6	1	348 211
45	759	1.6	1	368 391
46	687	1.6	1	439 248
47	657	1.6	1	420 237
48	1043	1.6	1	659 384
49	1373	1.6	1	1158 215
50	1626	1.6	1	127 1499
51	376	1.6	1	37 339
52	283	1.6	1	14 269
53	508	1.6	1	9 499
54	168	1.6	1	10 158
55	434	1.6	1	4 430
56	254	1.6	1	8 246
57	194	1.6	1	5 189
58	396	1.6	1	2 394
59	259	1.6	1	1 258
60	1024	1.6	1	4 1020
61	193	1.6	1	3 190
62	247	1.6	1	23 224
63	404	1.6	1	3 401
64	154	1.6	1	7 147
65	159	1.6	1	9 150
66	229	1.6	1	9 220
67	217	1.6	1	3 214
68	460	1.6	1	10 450
69	72	1.6	1	1 71
70	104	1.6	1	5 99
71	60	1.6	1	4 56
72	107	1.6	1	7 100
73	402	1.6	1	6 396
74	146	1.6	1	42 104
75	1277	1.6	1	1110 167
76	67	1.6	1	2 65


RUN STATISTICS FOR INPUT FILE: A-N4293-2.end1.fastq.gz
=============================================
27006792 sequences processed in total