SUMMARISING RUN PARAMETERS
==========================
Input filename: A-15171-1.end1.fastq.gz
Trimming mode: paired-end
Trim Galore version: 0.4.4
Cutadapt version: 1.16
Quality Phred score cutoff: 20
Quality encoding type selected: ASCII+33
Adapter sequence: 'CTGTCTCTTATA' (Nextera Transposase sequence; auto-detected)
Maximum trimming error rate: 0.1 (default)
Minimum required adapter overlap (stringency): 1 bp
Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp
All sequences will be trimmed by 1 bp on their 3' end to avoid problems with invalid paired-end alignments with Bowtie 1
Output file will be GZIP compressed


This is cutadapt 1.16 with Python 2.7.13
Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA A-15171-1.end1.fastq.gz
Running on 1 core
Trimming 1 adapter with at most 10.0% errors in single-end mode ...
Finished in 898.95 s (35 us/read; 1.72 M reads/minute).

=== Summary ===

Total reads processed:              25,789,699
Reads with adapters:                10,235,752 (39.7%)
Reads written (passing filters):    25,789,699 (100.0%)

Total basepairs processed: 1,628,355,066 bp
Quality-trimmed:                  12,171 bp (0.0%)
Total written (filtered):  1,610,634,389 bp (98.9%)

=== Adapter 1 ===

Sequence: CTGTCTCTTATA; Type: regular 3'; Length: 12; Trimmed: 10235752 times.

No. of allowed errors:
0-9 bp: 0; 10-12 bp: 1

Bases preceding removed adapters:
  A: 28.2%
  C: 27.7%
  G: 22.7%
  T: 21.4%
  none/other: 0.0%

Overview of removed sequences
length	count	expect	max.err	error counts
1	8106357	6447424.8	0	8106357
2	1465944	1611856.2	0	1465944
3	366408	402964.0	0	366408
4	79958	100741.0	0	79958
5	20476	25185.3	0	20476
6	10955	6296.3	0	10955
7	4660	1574.1	0	4660
8	4095	393.5	0	4095
9	4032	98.4	0	3281 751
10	3986	24.6	1	3026 960
11	4876	6.1	1	3109 1767
12	4088	1.5	1	3198 890
13	3964	1.5	1	3303 661
14	5106	1.5	1	3230 1876
15	4498	1.5	1	2771 1727
16	3667	1.5	1	2818 849
17	3545	1.5	1	2877 668
18	3342	1.5	1	3115 227
19	4107	1.5	1	3585 522
20	4390	1.5	1	3841 549
21	4695	1.5	1	4418 277
22	5958	1.5	1	4597 1361
23	5835	1.5	1	5503 332
24	6308	1.5	1	5934 374
25	5281	1.5	1	5100 181
26	4391	1.5	1	4145 246
27	4192	1.5	1	3813 379
28	4463	1.5	1	4139 324
29	5280	1.5	1	4962 318
30	5802	1.5	1	5606 196
31	5650	1.5	1	5408 242
32	5745	1.5	1	5539 206
33	7576	1.5	1	7246 330
34	7984	1.5	1	7759 225
35	7520	1.5	1	7356 164
36	5394	1.5	1	5175 219
37	4648	1.5	1	4502 146
38	4973	1.5	1	4662 311
39	4165	1.5	1	4001 164
40	2788	1.5	1	2600 188
41	1450	1.5	1	1292 158
42	834	1.5	1	695 139
43	1055	1.5	1	533 522
44	433	1.5	1	270 163
45	714	1.5	1	286 428
46	587	1.5	1	282 305
47	485	1.5	1	286 199
48	851	1.5	1	488 363
49	1163	1.5	1	916 247
50	2356	1.5	1	92 2264
51	384	1.5	1	19 365
52	348	1.5	1	10 338
53	585	1.5	1	4 581
54	111	1.5	1	1 110
55	525	1.5	1	2 523
56	219	1.5	1	1 218
57	175	1.5	1	1 174
58	503	1.5	1	2 501
59	355	1.5	1	1 354
60	1338	1.5	1	1 1337
61	173	1.5	1	2 171
62	280	1.5	1	20 260
63	435	1.5	1	2 433
64	94	1.5	1	1 93
65	129	1.5	1	5 124
66	144	1.5	1	4 140
67	276	1.5	1	5 271
68	418	1.5	1	5 413
69	69	1.5	1	1 68
70	58	1.5	1	3 55
71	35	1.5	1	1 34
72	103	1.5	1	7 96
73	436	1.5	1	17 419
74	128	1.5	1	32 96
75	1353	1.5	1	1171 182
76	48	1.5	1	3 45


RUN STATISTICS FOR INPUT FILE: A-15171-1.end1.fastq.gz
=============================================
25789699 sequences processed in total