## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[A-13190-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.sort.bam] OUTPUT=A-13190-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.bam METRICS_FILE=A-13190-2.2x75mers-trimmed.bwa-mem.hg19-female.nochrM.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Sat Apr 14 14:59:04 PDT 2018

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	14716870	0	0	2253141	1748920	0.153099	162408681

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.128857
2.0	2.159919
3.0	3.101658
4.0	3.961813
5.0	4.747451
6.0	5.465027
7.0	6.120439
8.0	6.719071
9.0	7.265842
10.0	7.765246
11.0	8.221385
12.0	8.638008
13.0	9.018538
14.0	9.366102
15.0	9.683557
16.0	9.973509
17.0	10.238342
18.0	10.480233
19.0	10.701167
20.0	10.902962
21.0	11.087275
22.0	11.255621
23.0	11.409382
24.0	11.549823
25.0	11.678098
26.0	11.795259
27.0	11.902271
28.0	12.000012
29.0	12.089285
30.0	12.170825
31.0	12.245301
32.0	12.313324
33.0	12.375455
34.0	12.432203
35.0	12.484035
36.0	12.531377
37.0	12.574617
38.0	12.614112
39.0	12.650185
40.0	12.683132
41.0	12.713226
42.0	12.740712
43.0	12.765818
44.0	12.788748
45.0	12.809692
46.0	12.828821
47.0	12.846294
48.0	12.862252
49.0	12.876828
50.0	12.890141
51.0	12.902301
52.0	12.913408
53.0	12.923552
54.0	12.932818
55.0	12.941281
56.0	12.94901
57.0	12.95607
58.0	12.962519
59.0	12.968408
60.0	12.973788
61.0	12.978701
62.0	12.983189
63.0	12.987288
64.0	12.991032
65.0	12.994452
66.0	12.997575
67.0	13.000428
68.0	13.003034
69.0	13.005413
70.0	13.007587
71.0	13.009573
72.0	13.011386
73.0	13.013042
74.0	13.014555
75.0	13.015937
76.0	13.017199
77.0	13.018352
78.0	13.019404
79.0	13.020366
80.0	13.021244
81.0	13.022047
82.0	13.022779
83.0	13.023449
84.0	13.02406
85.0	13.024618
86.0	13.025128
87.0	13.025594
88.0	13.026019
89.0	13.026408
90.0	13.026763
91.0	13.027087
92.0	13.027383
93.0	13.027654
94.0	13.027901
95.0	13.028126
96.0	13.028332
97.0	13.028521
98.0	13.028692
99.0	13.028849
100.0	13.028993