SUMMARISING RUN PARAMETERS
==========================
Input filename: A-13190-1.end1.fastq.gz
Trimming mode: paired-end
Trim Galore version: 0.4.4
Cutadapt version: 1.16
Quality Phred score cutoff: 20
Quality encoding type selected: ASCII+33
Adapter sequence: 'CTGTCTCTTATA' (Nextera Transposase sequence; auto-detected)
Maximum trimming error rate: 0.1 (default)
Minimum required adapter overlap (stringency): 1 bp
Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp
All sequences will be trimmed by 1 bp on their 3' end to avoid problems with invalid paired-end alignments with Bowtie 1
Output file will be GZIP compressed


This is cutadapt 1.16 with Python 2.7.13
Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA A-13190-1.end1.fastq.gz
Running on 1 core
Trimming 1 adapter with at most 10.0% errors in single-end mode ...
Finished in 1200.58 s (36 us/read; 1.66 M reads/minute).

=== Summary ===

Total reads processed:              33,292,159
Reads with adapters:                13,099,080 (39.3%)
Reads written (passing filters):    33,292,159 (100.0%)

Total basepairs processed: 2,131,725,667 bp
Quality-trimmed:                  12,555 bp (0.0%)
Total written (filtered):  2,110,437,014 bp (99.0%)

=== Adapter 1 ===

Sequence: CTGTCTCTTATA; Type: regular 3'; Length: 12; Trimmed: 13099080 times.

No. of allowed errors:
0-9 bp: 0; 10-12 bp: 1

Bases preceding removed adapters:
  A: 27.5%
  C: 27.5%
  G: 23.0%
  T: 22.0%
  none/other: 0.0%

Overview of removed sequences
length	count	expect	max.err	error counts
1	10294530	8323039.8	0	10294530
2	1946938	2080759.9	0	1946938
3	524076	520190.0	0	524076
4	114914	130047.5	0	114914
5	29417	32511.9	0	29417
6	16376	8128.0	0	16376
7	5514	2032.0	0	5514
8	4142	508.0	0	4142
9	4108	127.0	0	3043 1065
10	3871	31.7	1	2557 1314
11	4843	7.9	1	2850 1993
12	4077	2.0	1	3003 1074
13	3774	2.0	1	2995 779
14	4478	2.0	1	2652 1826
15	4038	2.0	1	2369 1669
16	3007	2.0	1	2223 784
17	3034	2.0	1	2296 738
18	2841	2.0	1	2600 241
19	3545	2.0	1	2964 581
20	3806	2.0	1	3239 567
21	3940	2.0	1	3655 285
22	5681	2.0	1	4265 1416
23	5735	2.0	1	5336 399
24	5700	2.0	1	5271 429
25	4454	2.0	1	4218 236
26	3663	2.0	1	3358 305
27	3565	2.0	1	3075 490
28	3738	2.0	1	3317 421
29	4419	2.0	1	4025 394
30	4683	2.0	1	4434 249
31	4728	2.0	1	4454 274
32	5033	2.0	1	4772 261
33	7232	2.0	1	6789 443
34	7334	2.0	1	7050 284
35	6364	2.0	1	6109 255
36	4894	2.0	1	4576 318
37	3669	2.0	1	3447 222
38	4248	2.0	1	3862 386
39	3945	2.0	1	3665 280
40	2977	2.0	1	2681 296
41	1645	2.0	1	1422 223
42	1060	2.0	1	861 199
43	1412	2.0	1	752 660
44	553	2.0	1	288 265
45	760	2.0	1	280 480
46	583	2.0	1	247 336
47	519	2.0	1	264 255
48	1003	2.0	1	479 524
49	1087	2.0	1	821 266
50	2402	2.0	1	96 2306
51	498	2.0	1	29 469
52	345	2.0	1	12 333
53	737	2.0	1	4 733
54	162	2.0	1	7 155
55	574	2.0	1	2 572
56	326	2.0	1	6 320
57	243	2.0	1	3 240
58	623	2.0	1	4 619
59	381	2.0	1	2 379
60	1588	2.0	1	4 1584
61	248	2.0	1	3 245
62	288	2.0	1	23 265
63	606	2.0	1	5 601
64	168	2.0	1	11 157
65	151	2.0	1	5 146
66	255	2.0	1	4 251
67	304	2.0	1	5 299
68	539	2.0	1	1 538
69	107	2.0	1	2 105
70	102	2.0	1	5 97
71	75	2.0	1	5 70
72	109	2.0	1	12 97
73	537	2.0	1	18 519
74	148	2.0	1	25 123
75	1532	2.0	1	1287 245
76	79	2.0	1	0 79


RUN STATISTICS FOR INPUT FILE: A-13190-1.end1.fastq.gz
=============================================
33292159 sequences processed in total