SUMMARISING RUN PARAMETERS
==========================
Input filename: A-13189-1.end1.fastq.gz
Trimming mode: paired-end
Trim Galore version: 0.4.4
Cutadapt version: 1.16
Quality Phred score cutoff: 20
Quality encoding type selected: ASCII+33
Adapter sequence: 'CTGTCTCTTATA' (Nextera Transposase sequence; auto-detected)
Maximum trimming error rate: 0.1 (default)
Minimum required adapter overlap (stringency): 1 bp
Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp
All sequences will be trimmed by 1 bp on their 3' end to avoid problems with invalid paired-end alignments with Bowtie 1
Output file will be GZIP compressed


This is cutadapt 1.16 with Python 2.7.13
Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA A-13189-1.end1.fastq.gz
Running on 1 core
Trimming 1 adapter with at most 10.0% errors in single-end mode ...
Finished in 1161.04 s (36 us/read; 1.67 M reads/minute).

=== Summary ===

Total reads processed:              32,315,377
Reads with adapters:                12,751,672 (39.5%)
Reads written (passing filters):    32,315,377 (100.0%)

Total basepairs processed: 2,056,122,463 bp
Quality-trimmed:                  14,452 bp (0.0%)
Total written (filtered):  2,034,139,382 bp (98.9%)

=== Adapter 1 ===

Sequence: CTGTCTCTTATA; Type: regular 3'; Length: 12; Trimmed: 12751672 times.

No. of allowed errors:
0-9 bp: 0; 10-12 bp: 1

Bases preceding removed adapters:
  A: 28.1%
  C: 27.9%
  G: 22.7%
  T: 21.2%
  none/other: 0.0%

Overview of removed sequences
length	count	expect	max.err	error counts
1	10096945	8078844.2	0	10096945
2	1843186	2019711.1	0	1843186
3	449665	504927.8	0	449665
4	97891	126231.9	0	97891
5	24552	31558.0	0	24552
6	13500	7889.5	0	13500
7	5539	1972.4	0	5539
8	5188	493.1	0	5188
9	4937	123.3	0	4018 919
10	4645	30.8	1	3526 1119
11	5844	7.7	1	3855 1989
12	5429	1.9	1	4228 1201
13	5208	1.9	1	4312 896
14	6302	1.9	1	3972 2330
15	5552	1.9	1	3616 1936
16	4127	1.9	1	3180 947
17	4225	1.9	1	3394 831
18	3802	1.9	1	3566 236
19	4738	1.9	1	4130 608
20	5109	1.9	1	4524 585
21	5484	1.9	1	5185 299
22	7607	1.9	1	6027 1580
23	8285	1.9	1	7927 358
24	8100	1.9	1	7712 388
25	6610	1.9	1	6382 228
26	5090	1.9	1	4766 324
27	5012	1.9	1	4496 516
28	4992	1.9	1	4601 391
29	5997	1.9	1	5608 389
30	6166	1.9	1	5921 245
31	6087	1.9	1	5860 227
32	6495	1.9	1	6258 237
33	9367	1.9	1	8902 465
34	9950	1.9	1	9686 264
35	9028	1.9	1	8817 211
36	6692	1.9	1	6424 268
37	5069	1.9	1	4867 202
38	5504	1.9	1	5172 332
39	5149	1.9	1	4924 225
40	3386	1.9	1	3129 257
41	1940	1.9	1	1754 186
42	1054	1.9	1	904 150
43	1542	1.9	1	752 790
44	556	1.9	1	345 211
45	856	1.9	1	327 529
46	599	1.9	1	286 313
47	487	1.9	1	271 216
48	1011	1.9	1	476 535
49	1268	1.9	1	1025 243
50	3407	1.9	1	98 3309
51	506	1.9	1	17 489
52	385	1.9	1	5 380
53	859	1.9	1	5 854
54	141	1.9	1	4 137
55	748	1.9	1	6 742
56	305	1.9	1	4 301
57	221	1.9	1	1 220
58	732	1.9	1	0 732
59	477	1.9	1	0 477
60	2147	1.9	1	3 2144
61	252	1.9	1	3 249
62	379	1.9	1	30 349
63	796	1.9	1	1 795
64	99	1.9	1	9 90
65	182	1.9	1	4 178
66	187	1.9	1	4 183
67	338	1.9	1	4 334
68	537	1.9	1	7 530
69	99	1.9	1	2 97
70	89	1.9	1	2 87
71	53	1.9	1	3 50
72	114	1.9	1	4 110
73	714	1.9	1	12 702
74	174	1.9	1	46 128
75	1894	1.9	1	1627 267
76	70	1.9	1	1 69


RUN STATISTICS FOR INPUT FILE: A-13189-1.end1.fastq.gz
=============================================
32315377 sequences processed in total