2019-11-26 00:56:43,814:eu_debug: Connecting to www.encodeproject.org 2019-11-26 00:56:43,818:eu_debug: DRY RUN is enabled. 2019-11-26 00:56:43,819:eu_debug: submission=False: In non-submission mode. 2019-11-26 00:57:05,115:eu_debug: Connecting to www.encodeproject.org 2019-11-26 00:57:05,118:eu_debug: DRY RUN is enabled. 2019-11-26 00:57:05,118:eu_debug: submission=False: In non-submission mode. 2019-11-26 00:57:18,792:eu_debug: Connecting to www.encodeproject.org 2019-11-26 00:57:18,796:eu_debug: submission=False: In non-submission mode. 2019-11-26 00:58:33,846:eu_debug: Connecting to www.encodeproject.org 2019-11-26 00:58:33,850:eu_debug: submission=False: In non-submission mode. 2020-02-24 16:10:58,891:eu_debug: Connecting to www.encodeproject.org 2020-02-24 16:10:58,901:eu_debug: DRY RUN is enabled. 2020-02-24 16:10:58,901:eu_debug: submission=False: In non-submission mode. 2020-02-24 17:19:29,535:eu_debug: Connecting to www.encodeproject.org 2020-02-24 17:19:29,537:eu_debug: DRY RUN is enabled. 2020-02-24 17:19:29,537:eu_debug: submission=False: In non-submission mode. 2020-02-24 20:08:18,260:eu_debug: Connecting to www.encodeproject.org 2020-02-24 20:08:18,321:eu_debug: DRY RUN is enabled. 2020-02-24 20:08:18,321:eu_debug: submission=False: In non-submission mode. 2020-02-25 13:34:12,068:eu_debug: Connecting to www.encodeproject.org 2020-02-25 13:34:12,069:eu_debug: DRY RUN is enabled. 2020-02-25 13:34:12,070:eu_debug: submission=False: In non-submission mode. 2020-02-25 13:37:58,467:eu_debug: Connecting to www.encodeproject.org 2020-02-25 13:37:58,469:eu_debug: DRY RUN is enabled. 2020-02-25 13:37:58,469:eu_debug: submission=False: In non-submission mode. 2020-02-28 15:28:16,982:eu_debug: Connecting to www.encodeproject.org 2020-02-28 15:28:17,176:eu_debug: submission=False: In non-submission mode. 2020-02-28 15:28:17,447:eu_debug: submission=True: In submission mode. 2020-02-28 15:28:17,462:eu_debug: IN post(). 2020-02-28 15:28:17,462:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRa_tiling-T0 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_tiling-T0" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "elements_references": [ "will-greenleaf:K562_CRISPR_tiling_reference" ], "lab": "/labs/will-greenleaf/" } 2020-02-28 15:28:17,587:eu_debug: Failed to POST will-greenleaf:K562_CRISPRa_tiling-T0 2020-02-28 15:28:17,587:eu_debug: <<<<<< DCC POST RESPONSE: 2020-02-28 15:28:17,588:eu_debug: { "@type": [ "ValidationFailure", "Error" ], "code": 422, "description": "Failed validation", "errors": [ { "description": "'will-greenleaf:K562_CRISPR_tiling_reference' not found", "location": "body", "name": [ "elements_references", 0 ] } ], "status": "error", "title": "Unprocessable Entity" } 2020-02-28 15:28:40,731:eu_debug: Connecting to www.encodeproject.org 2020-02-28 15:28:40,733:eu_debug: submission=False: In non-submission mode. 2020-02-28 15:28:40,969:eu_debug: submission=True: In submission mode. 2020-02-28 15:28:40,994:eu_debug: IN post(). 2020-02-28 15:28:40,994:eu_debug: <<<<<< POST reference record will-greenleaf:K562_CRISPR_tiling_reference To DCC with URL https://www.encodeproject.org/reference and this payload: { "aliases": [ "will-greenleaf:K562_CRISPR_tiling_reference" ], "award": "/awards/UM1HG009436/", "lab": "/labs/will-greenleaf/", "reference_type": "functional elements" } 2020-02-28 15:28:41,116:eu_debug: Success. 2020-02-28 15:28:48,112:eu_debug: Connecting to www.encodeproject.org 2020-02-28 15:28:48,114:eu_debug: submission=False: In non-submission mode. 2020-02-28 15:28:48,384:eu_debug: submission=True: In submission mode. 2020-02-28 15:28:48,395:eu_debug: IN post(). 2020-02-28 15:28:48,396:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRa_tiling-T0 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_tiling-T0" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "elements_references": [ "will-greenleaf:K562_CRISPR_tiling_reference" ], "lab": "/labs/will-greenleaf/" } 2020-02-28 15:28:48,519:eu_debug: Success. 2020-02-28 15:28:48,519:eu_debug: IN post(). 2020-02-28 15:28:48,520:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRd_tiling-T0 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_tiling-T0" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "elements_references": [ "will-greenleaf:K562_CRISPR_tiling_reference" ], "lab": "/labs/will-greenleaf/" } 2020-02-28 15:28:48,646:eu_debug: Success. 2020-02-28 15:28:48,646:eu_debug: IN post(). 2020-02-28 15:28:48,647:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRk_tiling-T0 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_tiling-T0" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "elements_references": [ "will-greenleaf:K562_CRISPR_tiling_reference" ], "lab": "/labs/will-greenleaf/" } 2020-02-28 15:28:48,778:eu_debug: Success. 2020-02-28 15:28:48,778:eu_debug: IN post(). 2020-02-28 15:28:48,779:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRi_tiling-T0 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_tiling-T0" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "elements_references": [ "will-greenleaf:K562_CRISPR_tiling_reference" ], "lab": "/labs/will-greenleaf/" } 2020-02-28 15:28:48,900:eu_debug: Success. 2020-02-28 15:28:48,900:eu_debug: IN post(). 2020-02-28 15:28:48,901:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRa_tiling-T14 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_tiling-T14" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "elements_references": [ "will-greenleaf:K562_CRISPR_tiling_reference" ], "lab": "/labs/will-greenleaf/" } 2020-02-28 15:28:49,016:eu_debug: Success. 2020-02-28 15:28:49,017:eu_debug: IN post(). 2020-02-28 15:28:49,017:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRd_tiling-T14 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_tiling-T14" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "elements_references": [ "will-greenleaf:K562_CRISPR_tiling_reference" ], "lab": "/labs/will-greenleaf/" } 2020-02-28 15:28:49,133:eu_debug: Success. 2020-02-28 15:28:49,133:eu_debug: IN post(). 2020-02-28 15:28:49,134:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRk_tiling-T14 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_tiling-T14" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "elements_references": [ "will-greenleaf:K562_CRISPR_tiling_reference" ], "lab": "/labs/will-greenleaf/" } 2020-02-28 15:28:49,244:eu_debug: Success. 2020-02-28 15:28:49,245:eu_debug: IN post(). 2020-02-28 15:28:49,246:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRi_tiling-T14 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_tiling-T14" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "elements_references": [ "will-greenleaf:K562_CRISPR_tiling_reference" ], "lab": "/labs/will-greenleaf/" } 2020-02-28 15:28:49,360:eu_debug: Success. 2020-02-28 15:28:55,582:eu_debug: Connecting to www.encodeproject.org 2020-02-28 15:28:55,584:eu_debug: submission=False: In non-submission mode. 2020-02-28 15:28:55,850:eu_debug: submission=True: In submission mode. 2020-02-28 15:28:55,881:eu_debug: IN post(). 2020-02-28 15:28:55,882:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRa_tiling_screen_T0-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_tiling_screen_T0-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-02-28 15:28:56,129:eu_debug: Success. 2020-02-28 15:28:56,129:eu_debug: IN post(). 2020-02-28 15:28:56,130:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRi_tiling_screen_T0-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_tiling_screen_T0-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-02-28 15:28:56,375:eu_debug: Success. 2020-02-28 15:28:56,375:eu_debug: IN post(). 2020-02-28 15:28:56,376:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_tiling_screen_T0-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_tiling_screen_T0-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-02-28 15:28:56,627:eu_debug: Success. 2020-02-28 15:28:56,627:eu_debug: IN post(). 2020-02-28 15:28:56,628:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRd_tiling_screen_T0-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_tiling_screen_T0-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-02-28 15:28:56,877:eu_debug: Success. 2020-02-28 15:28:56,877:eu_debug: IN post(). 2020-02-28 15:28:56,878:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRa_tiling_screen_T14-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_tiling_screen_T14-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-02-28 15:28:57,139:eu_debug: Success. 2020-02-28 15:28:57,140:eu_debug: IN post(). 2020-02-28 15:28:57,140:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRi_tiling_screen_T14-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_tiling_screen_T14-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-02-28 15:28:57,383:eu_debug: Success. 2020-02-28 15:28:57,383:eu_debug: IN post(). 2020-02-28 15:28:57,384:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_tiling_screen_T14-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_tiling_screen_T14-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-02-28 15:28:57,630:eu_debug: Success. 2020-02-28 15:28:57,631:eu_debug: IN post(). 2020-02-28 15:28:57,632:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRd_tiling_screen_T14-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_tiling_screen_T14-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-02-28 15:28:57,880:eu_debug: Success. 2020-02-28 15:28:57,881:eu_debug: IN post(). 2020-02-28 15:28:57,882:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRa_tiling_screen_T14-R2 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_tiling_screen_T14-R2" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-02-28 15:28:58,546:eu_debug: Success. 2020-02-28 15:28:58,546:eu_debug: IN post(). 2020-02-28 15:28:58,547:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRi_tiling_screen_T14-R2 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_tiling_screen_T14-R2" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-02-28 15:28:58,787:eu_debug: Success. 2020-02-28 15:28:58,787:eu_debug: IN post(). 2020-02-28 15:28:58,788:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_tiling_screen_T14-R2 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_tiling_screen_T14-R2" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-02-28 15:28:59,036:eu_debug: Success. 2020-02-28 15:28:59,036:eu_debug: IN post(). 2020-02-28 15:28:59,037:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRd_tiling_screen_T14-R2 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_tiling_screen_T14-R2" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-02-28 15:28:59,274:eu_debug: Success. 2020-02-28 15:29:04,665:eu_debug: Connecting to www.encodeproject.org 2020-02-28 15:29:04,666:eu_debug: submission=False: In non-submission mode. 2020-02-28 15:29:04,946:eu_debug: submission=True: In submission mode. 2020-02-28 15:29:04,956:eu_debug: IN post(). 2020-02-28 15:29:04,957:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRa_tiling_T14-R1_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_tiling_T14-R1_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRa_tiling_screen_T14-R1", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-02-28 15:29:05,069:eu_debug: Success. 2020-02-28 15:29:05,070:eu_debug: IN post(). 2020-02-28 15:29:05,070:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRa_tiling_T14-R2_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_tiling_T14-R2_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRa_tiling_screen_T14-R2", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-02-28 15:29:05,186:eu_debug: Success. 2020-02-28 15:29:05,187:eu_debug: IN post(). 2020-02-28 15:29:05,187:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRd_tiling_T14-R1_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_tiling_T14-R1_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRd_tiling_screen_T14-R1", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-02-28 15:29:05,305:eu_debug: Success. 2020-02-28 15:29:05,305:eu_debug: IN post(). 2020-02-28 15:29:05,306:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRd_tiling_T14-R2_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_tiling_T14-R2_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRd_tiling_screen_T14-R2", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-02-28 15:29:05,423:eu_debug: Success. 2020-02-28 15:29:05,423:eu_debug: IN post(). 2020-02-28 15:29:05,424:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRk_tiling_T14-R1_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_tiling_T14-R1_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRk_tiling_screen_T14-R1", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-02-28 15:29:05,547:eu_debug: Success. 2020-02-28 15:29:05,548:eu_debug: IN post(). 2020-02-28 15:29:05,548:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRk_tiling_T14-R2_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_tiling_T14-R2_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRk_tiling_screen_T14-R2", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-02-28 15:29:05,721:eu_debug: Success. 2020-02-28 15:29:05,721:eu_debug: IN post(). 2020-02-28 15:29:05,722:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRi_tiling_T14-R1_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_tiling_T14-R1_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRi_tiling_screen_T14-R1", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-02-28 15:29:05,839:eu_debug: Success. 2020-02-28 15:29:05,839:eu_debug: IN post(). 2020-02-28 15:29:05,840:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRi_tiling_T14-R2_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_tiling_T14-R2_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRi_tiling_screen_T14-R2", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-02-28 15:29:05,950:eu_debug: Success. 2020-02-28 15:29:05,951:eu_debug: IN post(). 2020-02-28 15:29:05,952:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRa_tiling_T0-R1_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_tiling_T0-R1_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRa_tiling_screen_T0-R1", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-02-28 15:29:06,064:eu_debug: Success. 2020-02-28 15:29:06,064:eu_debug: IN post(). 2020-02-28 15:29:06,065:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRd_tiling_T0-R1_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_tiling_T0-R1_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRd_tiling_screen_T0-R1", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-02-28 15:29:06,187:eu_debug: Success. 2020-02-28 15:29:06,188:eu_debug: IN post(). 2020-02-28 15:29:06,188:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRk_tiling_T0-R1_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_tiling_T0-R1_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRk_tiling_screen_T0-R1", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-02-28 15:29:06,298:eu_debug: Success. 2020-02-28 15:29:06,298:eu_debug: IN post(). 2020-02-28 15:29:06,299:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRi_tiling_T0-R1_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_tiling_T0-R1_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRi_tiling_screen_T0-R1", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-02-28 15:29:06,416:eu_debug: Success. 2020-02-28 15:29:09,421:eu_debug: Connecting to www.encodeproject.org 2020-02-28 15:29:09,422:eu_debug: submission=False: In non-submission mode. 2020-02-28 15:29:09,661:eu_debug: submission=True: In submission mode. 2020-02-28 15:29:09,674:eu_debug: IN post(). 2020-02-28 15:29:09,675:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRa_tiling_T0-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_tiling_T0-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRa_tiling-T0", "library": "will-greenleaf:K562_CRISPRa_tiling_T0-R1_library", "technical_replicate_number": 1 } 2020-02-28 15:29:09,789:eu_debug: Success. 2020-02-28 15:29:09,789:eu_debug: IN post(). 2020-02-28 15:29:09,790:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRd_tiling_T0-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_tiling_T0-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRd_tiling-T0", "library": "will-greenleaf:K562_CRISPRd_tiling_T0-R1_library", "technical_replicate_number": 1 } 2020-02-28 15:29:09,897:eu_debug: Success. 2020-02-28 15:29:09,897:eu_debug: IN post(). 2020-02-28 15:29:09,898:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRk_tiling_T0-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_tiling_T0-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRk_tiling-T0", "library": "will-greenleaf:K562_CRISPRk_tiling_T0-R1_library", "technical_replicate_number": 1 } 2020-02-28 15:29:10,008:eu_debug: Success. 2020-02-28 15:29:10,207:eu_debug: IN post(). 2020-02-28 15:29:10,208:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRi_tiling_T0-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_tiling_T0-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRi_tiling-T0", "library": "will-greenleaf:K562_CRISPRi_tiling_T0-R1_library", "technical_replicate_number": 1 } 2020-02-28 15:29:10,314:eu_debug: Success. 2020-02-28 15:29:10,314:eu_debug: IN post(). 2020-02-28 15:29:10,315:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRa_tiling_T14-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_tiling_T14-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRa_tiling-T14", "library": "will-greenleaf:K562_CRISPRa_tiling_T14-R1_library", "technical_replicate_number": 1 } 2020-02-28 15:29:10,423:eu_debug: Success. 2020-02-28 15:29:10,423:eu_debug: IN post(). 2020-02-28 15:29:10,424:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRd_tiling_T14-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_tiling_T14-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRd_tiling-T14", "library": "will-greenleaf:K562_CRISPRd_tiling_T14-R1_library", "technical_replicate_number": 1 } 2020-02-28 15:29:10,529:eu_debug: Success. 2020-02-28 15:29:10,529:eu_debug: IN post(). 2020-02-28 15:29:10,530:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRk_tiling_T14-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_tiling_T14-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRk_tiling-T14", "library": "will-greenleaf:K562_CRISPRk_tiling_T14-R1_library", "technical_replicate_number": 1 } 2020-02-28 15:29:10,636:eu_debug: Success. 2020-02-28 15:29:10,636:eu_debug: IN post(). 2020-02-28 15:29:10,637:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRi_tiling_T14-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_tiling_T14-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRi_tiling-T14", "library": "will-greenleaf:K562_CRISPRi_tiling_T14-R1_library", "technical_replicate_number": 1 } 2020-02-28 15:29:10,771:eu_debug: Success. 2020-02-28 15:29:10,771:eu_debug: IN post(). 2020-02-28 15:29:10,772:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRa_tiling_T14-R2_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_tiling_T14-R2_T1" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRa_tiling-T14", "library": "will-greenleaf:K562_CRISPRa_tiling_T14-R2_library", "technical_replicate_number": 1 } 2020-02-28 15:29:10,881:eu_debug: Success. 2020-02-28 15:29:10,882:eu_debug: IN post(). 2020-02-28 15:29:10,882:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRd_tiling_T14-R2_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_tiling_T14-R2_T1" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRd_tiling-T14", "library": "will-greenleaf:K562_CRISPRd_tiling_T14-R2_library", "technical_replicate_number": 1 } 2020-02-28 15:29:10,992:eu_debug: Success. 2020-02-28 15:29:10,993:eu_debug: IN post(). 2020-02-28 15:29:10,994:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRk_tiling_T14-R2_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_tiling_T14-R2_T1" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRk_tiling-T14", "library": "will-greenleaf:K562_CRISPRk_tiling_T14-R2_library", "technical_replicate_number": 1 } 2020-02-28 15:29:11,102:eu_debug: Success. 2020-02-28 15:29:11,103:eu_debug: IN post(). 2020-02-28 15:29:11,103:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRi_tiling_T14-R2_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_tiling_T14-R2_T1" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRi_tiling-T14", "library": "will-greenleaf:K562_CRISPRi_tiling_T14-R2_library", "technical_replicate_number": 1 } 2020-02-28 15:29:11,213:eu_debug: Success. 2020-02-28 15:29:16,149:eu_debug: Connecting to www.encodeproject.org 2020-02-28 15:29:16,150:eu_debug: submission=False: In non-submission mode. 2020-02-28 15:29:16,618:eu_debug: submission=True: In submission mode. 2020-02-28 15:29:16,630:eu_debug: IN post(). 2020-02-28 15:29:17,004:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.tiling.CRISPRa_T0.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.tiling.CRISPRa_T0.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_tiling-T0", "file_format": "fastq", "file_size": 176635884, "lab": "/labs/will-greenleaf/", "md5sum": "c0d5d0b1aabfbff87a2dc2ef591f0843", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRa_tiling_T0-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.tiling.CRISPRa_T0.fastq.gz" } 2020-02-28 15:29:17,527:eu_debug: Success. 2020-02-28 15:29:17,527:eu_debug: IN upload_file() 2020-02-28 15:29:17,527:eu_debug: Attempting to generate new file upload credentials 2020-02-28 15:29:18,035:eu_debug: Success: upload credentials for 'ENCFF068YUN' regenerated. 2020-02-28 15:29:18,035:eu_debug: >>>>>>GET ENCFF068YUN From DCC with URL https://www.encodeproject.org/ENCFF068YUN/?format=json&datastore=database 2020-02-28 15:29:18,500:eu_debug: Running command 'aws s3 cp CRISPR-screen.tiling.CRISPRa_T0.fastq.gz s3://encode-files/2020/02/28/31930266-dfe9-4dfe-b942-b7c8a45f8e3b/ENCFF068YUN.fastq.gz'. 2020-02-28 15:29:34,177:eu_debug: AWS upload successful. 2020-02-28 15:29:34,179:eu_debug: IN post(). 2020-02-28 15:29:34,482:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.tiling.CRISPRa_T14_Rep1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.tiling.CRISPRa_T14_Rep1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_tiling-T14", "file_format": "fastq", "file_size": 157765915, "lab": "/labs/will-greenleaf/", "md5sum": "122fdcdbcdfeb6c6606368f434b5ad0d", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRa_tiling_T14-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.tiling.CRISPRa_T14_Rep1.fastq.gz" } 2020-02-28 15:29:35,001:eu_debug: Success. 2020-02-28 15:29:35,003:eu_debug: IN upload_file() 2020-02-28 15:29:35,003:eu_debug: Attempting to generate new file upload credentials 2020-02-28 15:29:35,489:eu_debug: Success: upload credentials for 'ENCFF329EYO' regenerated. 2020-02-28 15:29:35,490:eu_debug: >>>>>>GET ENCFF329EYO From DCC with URL https://www.encodeproject.org/ENCFF329EYO/?format=json&datastore=database 2020-02-28 15:29:36,463:eu_debug: Running command 'aws s3 cp CRISPR-screen.tiling.CRISPRa_T14_Rep1.fastq.gz s3://encode-files/2020/02/28/c382b984-a6c8-49ff-93a0-737238484f74/ENCFF329EYO.fastq.gz'. 2020-02-28 15:29:41,587:eu_debug: AWS upload successful. 2020-02-28 15:29:41,589:eu_debug: IN post(). 2020-02-28 15:29:41,952:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.tiling.CRISPRa_T14_Rep2.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.tiling.CRISPRa_T14_Rep2.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_tiling-T14", "file_format": "fastq", "file_size": 185739290, "lab": "/labs/will-greenleaf/", "md5sum": "a614d15de47f2b7eb05aea9281c0d2ae", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRa_tiling_T14-R2_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.tiling.CRISPRa_T14_Rep2.fastq.gz" } 2020-02-28 15:29:42,465:eu_debug: Success. 2020-02-28 15:29:42,466:eu_debug: IN upload_file() 2020-02-28 15:29:42,466:eu_debug: Attempting to generate new file upload credentials 2020-02-28 15:29:42,958:eu_debug: Success: upload credentials for 'ENCFF559AOS' regenerated. 2020-02-28 15:29:42,958:eu_debug: >>>>>>GET ENCFF559AOS From DCC with URL https://www.encodeproject.org/ENCFF559AOS/?format=json&datastore=database 2020-02-28 15:29:43,454:eu_debug: Running command 'aws s3 cp CRISPR-screen.tiling.CRISPRa_T14_Rep2.fastq.gz s3://encode-files/2020/02/28/46d9712a-0cc0-44cc-96f7-f34bc88764a2/ENCFF559AOS.fastq.gz'. 2020-02-28 15:29:50,045:eu_debug: AWS upload successful. 2020-02-28 15:29:50,048:eu_debug: IN post(). 2020-02-28 15:29:50,404:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.tiling.CRISPRi_T0.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.tiling.CRISPRi_T0.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_tiling-T0", "file_format": "fastq", "file_size": 191195503, "lab": "/labs/will-greenleaf/", "md5sum": "eabc7054ea1d767c90811bc46557d6bf", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRi_tiling_T0-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.tiling.CRISPRi_T0.fastq.gz" } 2020-02-28 15:29:50,923:eu_debug: Success. 2020-02-28 15:29:50,924:eu_debug: IN upload_file() 2020-02-28 15:29:50,924:eu_debug: Attempting to generate new file upload credentials 2020-02-28 15:29:51,422:eu_debug: Success: upload credentials for 'ENCFF896WBS' regenerated. 2020-02-28 15:29:51,422:eu_debug: >>>>>>GET ENCFF896WBS From DCC with URL https://www.encodeproject.org/ENCFF896WBS/?format=json&datastore=database 2020-02-28 15:29:51,891:eu_debug: Running command 'aws s3 cp CRISPR-screen.tiling.CRISPRi_T0.fastq.gz s3://encode-files/2020/02/28/08fa84fb-8755-449e-ac3c-53237b83e3f9/ENCFF896WBS.fastq.gz'. 2020-02-28 15:29:58,123:eu_debug: AWS upload successful. 2020-02-28 15:29:58,125:eu_debug: IN post(). 2020-02-28 15:29:58,429:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.tiling.CRISPRi_T14_Rep1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.tiling.CRISPRi_T14_Rep1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_tiling-T14", "file_format": "fastq", "file_size": 152245698, "lab": "/labs/will-greenleaf/", "md5sum": "e5ef64d531094a4c95b877b5c5bbbad6", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRi_tiling_T14-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.tiling.CRISPRi_T14_Rep1.fastq.gz" } 2020-02-28 15:29:58,915:eu_debug: Success. 2020-02-28 15:29:58,916:eu_debug: IN upload_file() 2020-02-28 15:29:58,916:eu_debug: Attempting to generate new file upload credentials 2020-02-28 15:29:59,799:eu_debug: Success: upload credentials for 'ENCFF812XEX' regenerated. 2020-02-28 15:29:59,799:eu_debug: >>>>>>GET ENCFF812XEX From DCC with URL https://www.encodeproject.org/ENCFF812XEX/?format=json&datastore=database 2020-02-28 15:30:00,281:eu_debug: Running command 'aws s3 cp CRISPR-screen.tiling.CRISPRi_T14_Rep1.fastq.gz s3://encode-files/2020/02/28/0d9407b8-d8ef-45ee-b405-a32c984b142f/ENCFF812XEX.fastq.gz'. 2020-02-28 15:30:15,568:eu_debug: AWS upload successful. 2020-02-28 15:30:15,570:eu_debug: IN post(). 2020-02-28 15:30:15,887:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.tiling.CRISPRi_T14_Rep2.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.tiling.CRISPRi_T14_Rep2.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_tiling-T14", "file_format": "fastq", "file_size": 153130538, "lab": "/labs/will-greenleaf/", "md5sum": "65447f83fd09d23fd657bc4454e497d7", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRi_tiling_T14-R2_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.tiling.CRISPRi_T14_Rep2.fastq.gz" } 2020-02-28 15:30:16,395:eu_debug: Success. 2020-02-28 15:30:16,397:eu_debug: IN upload_file() 2020-02-28 15:30:16,397:eu_debug: Attempting to generate new file upload credentials 2020-02-28 15:30:17,918:eu_debug: Success: upload credentials for 'ENCFF412IHW' regenerated. 2020-02-28 15:30:17,918:eu_debug: >>>>>>GET ENCFF412IHW From DCC with URL https://www.encodeproject.org/ENCFF412IHW/?format=json&datastore=database 2020-02-28 15:30:18,413:eu_debug: Running command 'aws s3 cp CRISPR-screen.tiling.CRISPRi_T14_Rep2.fastq.gz s3://encode-files/2020/02/28/55f5e6eb-8bdb-4f88-9b05-7ebed3cf4d4e/ENCFF412IHW.fastq.gz'. 2020-02-28 15:30:34,096:eu_debug: AWS upload successful. 2020-02-28 15:30:34,098:eu_debug: IN post(). 2020-02-28 15:30:34,416:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.tiling.CRKO_T0.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.tiling.CRKO_T0.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_tiling-T0", "file_format": "fastq", "file_size": 166985272, "lab": "/labs/will-greenleaf/", "md5sum": "ab9a73fd26d67e080173471a6b14f599", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRk_tiling_T0-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.tiling.CRKO_T0.fastq.gz" } 2020-02-28 15:30:35,158:eu_debug: Success. 2020-02-28 15:30:35,159:eu_debug: IN upload_file() 2020-02-28 15:30:35,159:eu_debug: Attempting to generate new file upload credentials 2020-02-28 15:30:35,645:eu_debug: Success: upload credentials for 'ENCFF173YWV' regenerated. 2020-02-28 15:30:35,646:eu_debug: >>>>>>GET ENCFF173YWV From DCC with URL https://www.encodeproject.org/ENCFF173YWV/?format=json&datastore=database 2020-02-28 15:30:36,903:eu_debug: Running command 'aws s3 cp CRISPR-screen.tiling.CRKO_T0.fastq.gz s3://encode-files/2020/02/28/cdf3e877-0f9d-435f-9dce-942a87bccf40/ENCFF173YWV.fastq.gz'. 2020-02-28 15:30:42,828:eu_debug: AWS upload successful. 2020-02-28 15:30:42,830:eu_debug: IN post(). 2020-02-28 15:30:43,159:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.tiling.CRKO_T14_Rep1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.tiling.CRKO_T14_Rep1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_tiling-T14", "file_format": "fastq", "file_size": 165223000, "lab": "/labs/will-greenleaf/", "md5sum": "50faf0e4906435c652a083cdad005eef", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRk_tiling_T14-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.tiling.CRKO_T14_Rep1.fastq.gz" } 2020-02-28 15:30:43,658:eu_debug: Success. 2020-02-28 15:30:43,659:eu_debug: IN upload_file() 2020-02-28 15:30:43,660:eu_debug: Attempting to generate new file upload credentials 2020-02-28 15:30:44,145:eu_debug: Success: upload credentials for 'ENCFF718SFL' regenerated. 2020-02-28 15:30:44,145:eu_debug: >>>>>>GET ENCFF718SFL From DCC with URL https://www.encodeproject.org/ENCFF718SFL/?format=json&datastore=database 2020-02-28 15:30:44,634:eu_debug: Running command 'aws s3 cp CRISPR-screen.tiling.CRKO_T14_Rep1.fastq.gz s3://encode-files/2020/02/28/77452506-2480-4f8c-9bf6-d7952d632be2/ENCFF718SFL.fastq.gz'. 2020-02-28 15:30:48,769:eu_debug: AWS upload successful. 2020-02-28 15:30:48,772:eu_debug: IN post(). 2020-02-28 15:30:49,084:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.tiling.CRKO_T14_Rep2.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.tiling.CRKO_T14_Rep2.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_tiling-T14", "file_format": "fastq", "file_size": 152799439, "lab": "/labs/will-greenleaf/", "md5sum": "77ca5b0241fc1fb9d346984323a4b0de", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRk_tiling_T14-R2_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.tiling.CRKO_T14_Rep2.fastq.gz" } 2020-02-28 15:30:49,574:eu_debug: Success. 2020-02-28 15:30:49,575:eu_debug: IN upload_file() 2020-02-28 15:30:49,575:eu_debug: Attempting to generate new file upload credentials 2020-02-28 15:30:50,083:eu_debug: Success: upload credentials for 'ENCFF419FUH' regenerated. 2020-02-28 15:30:50,083:eu_debug: >>>>>>GET ENCFF419FUH From DCC with URL https://www.encodeproject.org/ENCFF419FUH/?format=json&datastore=database 2020-02-28 15:30:50,580:eu_debug: Running command 'aws s3 cp CRISPR-screen.tiling.CRKO_T14_Rep2.fastq.gz s3://encode-files/2020/02/28/fb61111e-e92c-4c06-abfe-5426a47e1d4f/ENCFF419FUH.fastq.gz'. 2020-02-28 15:30:56,277:eu_debug: AWS upload successful. 2020-02-28 15:30:56,280:eu_debug: IN post(). 2020-02-28 15:30:56,560:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.tiling.dCas9_T0.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.tiling.dCas9_T0.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_tiling-T0", "file_format": "fastq", "file_size": 128736984, "lab": "/labs/will-greenleaf/", "md5sum": "395f1fc2de938908cffa19128403f93a", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRd_tiling_T0-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.tiling.dCas9_T0.fastq.gz" } 2020-02-28 15:30:57,052:eu_debug: Success. 2020-02-28 15:30:57,055:eu_debug: IN upload_file() 2020-02-28 15:30:57,055:eu_debug: Attempting to generate new file upload credentials 2020-02-28 15:30:57,549:eu_debug: Success: upload credentials for 'ENCFF899XMV' regenerated. 2020-02-28 15:30:57,549:eu_debug: >>>>>>GET ENCFF899XMV From DCC with URL https://www.encodeproject.org/ENCFF899XMV/?format=json&datastore=database 2020-02-28 15:30:58,009:eu_debug: Running command 'aws s3 cp CRISPR-screen.tiling.dCas9_T0.fastq.gz s3://encode-files/2020/02/28/3de70db7-469c-4321-b995-7bc7aa6cdb82/ENCFF899XMV.fastq.gz'. 2020-02-28 15:31:04,298:eu_debug: AWS upload successful. 2020-02-28 15:31:04,299:eu_debug: IN post(). 2020-02-28 15:31:04,635:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.tiling.dCas9_T14_Rep1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.tiling.dCas9_T14_Rep1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_tiling-T14", "file_format": "fastq", "file_size": 181317708, "lab": "/labs/will-greenleaf/", "md5sum": "ef28df9c2f87681943973c8c73faaad4", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRd_tiling_T14-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.tiling.dCas9_T14_Rep1.fastq.gz" } 2020-02-28 15:31:05,136:eu_debug: Success. 2020-02-28 15:31:05,138:eu_debug: IN upload_file() 2020-02-28 15:31:05,138:eu_debug: Attempting to generate new file upload credentials 2020-02-28 15:31:05,638:eu_debug: Success: upload credentials for 'ENCFF309MJZ' regenerated. 2020-02-28 15:31:05,638:eu_debug: >>>>>>GET ENCFF309MJZ From DCC with URL https://www.encodeproject.org/ENCFF309MJZ/?format=json&datastore=database 2020-02-28 15:31:06,133:eu_debug: Running command 'aws s3 cp CRISPR-screen.tiling.dCas9_T14_Rep1.fastq.gz s3://encode-files/2020/02/28/d36fb1e5-ef5d-4eb6-917b-57e1a7ce87ee/ENCFF309MJZ.fastq.gz'. 2020-02-28 15:31:14,716:eu_debug: AWS upload successful. 2020-02-28 15:31:14,718:eu_debug: IN post(). 2020-02-28 15:31:15,021:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.tiling.dCas9_T14_Rep2.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.tiling.dCas9_T14_Rep2.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_tiling-T14", "file_format": "fastq", "file_size": 158260181, "lab": "/labs/will-greenleaf/", "md5sum": "2c1f6c2f5ebd1ebc4e9977c7e837b340", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRd_tiling_T14-R2_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.tiling.dCas9_T14_Rep2.fastq.gz" } 2020-02-28 15:31:15,514:eu_debug: Success. 2020-02-28 15:31:15,515:eu_debug: IN upload_file() 2020-02-28 15:31:15,515:eu_debug: Attempting to generate new file upload credentials 2020-02-28 15:31:15,972:eu_debug: Success: upload credentials for 'ENCFF130ZWQ' regenerated. 2020-02-28 15:31:15,973:eu_debug: >>>>>>GET ENCFF130ZWQ From DCC with URL https://www.encodeproject.org/ENCFF130ZWQ/?format=json&datastore=database 2020-02-28 15:31:16,458:eu_debug: Running command 'aws s3 cp CRISPR-screen.tiling.dCas9_T14_Rep2.fastq.gz s3://encode-files/2020/02/28/4abb9791-1243-4ae1-936c-edeec95c68df/ENCFF130ZWQ.fastq.gz'. 2020-02-28 15:31:22,303:eu_debug: AWS upload successful. 2020-02-28 15:33:36,071:eu_debug: Connecting to www.encodeproject.org 2020-02-28 15:33:36,072:eu_debug: submission=False: In non-submission mode. 2020-02-28 15:33:36,350:eu_debug: submission=True: In submission mode. 2020-02-28 15:33:36,379:eu_debug: IN post(). 2020-02-28 15:33:36,551:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPR_tiling_reference To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPR_tiling_reference" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPR_tiling", "file_format": "csv", "file_size": 3027580, "lab": "/labs/will-greenleaf/", "md5sum": "222ca03327e753afbabd50c8d54bee82", "output_type": "reference", "submitted_file_name": "CRISPR-screen.tiling.tiling_library_with_controls.csv" } 2020-02-28 15:33:36,663:eu_debug: Failed to POST will-greenleaf:K562_CRISPR_tiling_reference 2020-02-28 15:33:36,663:eu_debug: <<<<<< DCC POST RESPONSE: 2020-02-28 15:33:36,663:eu_debug: { "@type": [ "ValidationFailure", "Error" ], "code": 422, "description": "Failed validation", "errors": [ { "description": "'reference' is not valid under any of the given schemas", "location": "body", "name": [ "output_type" ] }, { "description": "'will-greenleaf:K562_CRISPR_tiling' not found", "location": "body", "name": [ "dataset" ] } ], "status": "error", "title": "Unprocessable Entity" } 2020-02-28 15:34:58,651:eu_debug: Connecting to www.encodeproject.org 2020-02-28 15:34:58,652:eu_debug: submission=False: In non-submission mode. 2020-02-28 15:34:58,915:eu_debug: submission=True: In submission mode. 2020-02-28 15:34:58,923:eu_debug: IN post(). 2020-02-28 15:34:58,937:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPR_tiling_reference To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPR_tiling_reference" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPR_tiling_reference", "file_format": "csv", "file_size": 3027580, "lab": "/labs/will-greenleaf/", "md5sum": "222ca03327e753afbabd50c8d54bee82", "output_type": "reference", "submitted_file_name": "CRISPR-screen.tiling.tiling_library_with_controls.csv" } 2020-02-28 15:34:59,045:eu_debug: Failed to POST will-greenleaf:K562_CRISPR_tiling_reference 2020-02-28 15:34:59,045:eu_debug: <<<<<< DCC POST RESPONSE: 2020-02-28 15:34:59,045:eu_debug: { "@type": [ "ValidationFailure", "Error" ], "code": 422, "description": "Failed validation", "errors": [ { "description": "'reference' is not valid under any of the given schemas", "location": "body", "name": [ "output_type" ] } ], "status": "error", "title": "Unprocessable Entity" } 2020-02-28 15:35:42,816:eu_debug: Connecting to www.encodeproject.org 2020-02-28 15:35:42,817:eu_debug: submission=False: In non-submission mode. 2020-02-28 15:35:43,088:eu_debug: submission=True: In submission mode. 2020-02-28 15:35:43,102:eu_debug: IN post(). 2020-02-28 15:35:43,117:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPR_tiling_reference To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPR_tiling_reference" ], "award": "/awards/UM1HG009436/", "file_format": "csv", "file_size": 3027580, "lab": "/labs/will-greenleaf/", "md5sum": "222ca03327e753afbabd50c8d54bee82", "output_type": "reference", "submitted_file_name": "CRISPR-screen.tiling.tiling_library_with_controls.csv" } 2020-02-28 15:35:43,222:eu_debug: Failed to POST will-greenleaf:K562_CRISPR_tiling_reference 2020-02-28 15:35:43,222:eu_debug: <<<<<< DCC POST RESPONSE: 2020-02-28 15:35:43,222:eu_debug: { "@type": [ "ValidationFailure", "Error" ], "code": 422, "description": "Failed validation", "errors": [ { "description": "'reference' is not valid under any of the given schemas", "location": "body", "name": [ "output_type" ] }, { "description": "{'aliases': ['will-greenleaf:K562_CRISPR_tiling_reference'], 'submitted_file_name': 'CRISPR-screen.tiling.tiling_library_with_controls.csv', 'output_type': 'reference', 'lab': '/labs/will-greenleaf/', 'file_format': 'csv', 'award': '/awards/UM1HG009436/', 'md5sum': '222ca03327e753afbabd50c8d54bee82', 'file_size': 3027580} is not valid under any of the given schemas", "location": "body", "name": [] } ], "status": "error", "title": "Unprocessable Entity" } 2020-02-28 15:40:12,683:eu_debug: Connecting to www.encodeproject.org 2020-02-28 15:40:12,684:eu_debug: submission=False: In non-submission mode. 2020-02-28 15:40:12,955:eu_debug: submission=True: In submission mode. 2020-02-28 15:40:12,968:eu_debug: IN post(). 2020-02-28 15:40:12,984:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPR_tiling_reference-file To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPR_tiling_reference-file" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPR_tiling_reference", "file_format": "csv", "file_size": 3027580, "lab": "/labs/will-greenleaf/", "md5sum": "222ca03327e753afbabd50c8d54bee82", "output_type": "reference", "submitted_file_name": "CRISPR-screen.tiling.tiling_library_with_controls.csv" } 2020-02-28 15:40:13,087:eu_debug: Failed to POST will-greenleaf:K562_CRISPR_tiling_reference-file 2020-02-28 15:40:13,087:eu_debug: <<<<<< DCC POST RESPONSE: 2020-02-28 15:40:13,087:eu_debug: { "@type": [ "ValidationFailure", "Error" ], "code": 422, "description": "Failed validation", "errors": [ { "description": "'reference' is not valid under any of the given schemas", "location": "body", "name": [ "output_type" ] } ], "status": "error", "title": "Unprocessable Entity" } 2020-02-28 15:40:58,180:eu_debug: Connecting to www.encodeproject.org 2020-02-28 15:40:58,182:eu_debug: submission=False: In non-submission mode. 2020-02-28 15:40:58,663:eu_debug: submission=True: In submission mode. 2020-02-28 15:40:58,673:eu_debug: IN post(). 2020-02-28 15:40:58,688:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPR_tiling_reference-file To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPR_tiling_reference-file" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPR_tiling_reference", "file_format": "csv", "file_size": 3027580, "lab": "/labs/will-greenleaf/", "md5sum": "222ca03327e753afbabd50c8d54bee82", "submitted_file_name": "CRISPR-screen.tiling.tiling_library_with_controls.csv" } 2020-02-28 15:40:58,789:eu_debug: Failed to POST will-greenleaf:K562_CRISPR_tiling_reference-file 2020-02-28 15:40:58,789:eu_debug: <<<<<< DCC POST RESPONSE: 2020-02-28 15:40:58,790:eu_debug: { "@type": [ "ValidationFailure", "Error" ], "code": 422, "description": "Failed validation", "errors": [ { "description": "{'file_format': 'csv', 'aliases': ['will-greenleaf:K562_CRISPR_tiling_reference-file'], 'file_size': 3027580, 'md5sum': '222ca03327e753afbabd50c8d54bee82', 'award': '/awards/UM1HG009436/', 'lab': '/labs/will-greenleaf/', 'dataset': 'will-greenleaf:K562_CRISPR_tiling_reference', 'submitted_file_name': 'CRISPR-screen.tiling.tiling_library_with_controls.csv'} is not valid under any of the given schemas", "location": "body", "name": [] } ], "status": "error", "title": "Unprocessable Entity" } 2020-02-28 15:41:41,537:eu_debug: Connecting to www.encodeproject.org 2020-02-28 15:41:41,538:eu_debug: submission=False: In non-submission mode. 2020-02-28 15:41:41,778:eu_debug: submission=True: In submission mode. 2020-02-28 15:41:41,789:eu_debug: IN post(). 2020-02-28 15:41:41,804:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPR_tiling_reference-file To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPR_tiling_reference-file" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPR_tiling_reference", "file_format": "csv", "file_size": 3027580, "lab": "/labs/will-greenleaf/", "md5sum": "222ca03327e753afbabd50c8d54bee82", "output_type": "reference", "submitted_file_name": "CRISPR-screen.tiling.tiling_library_with_controls.csv" } 2020-02-28 15:41:41,908:eu_debug: Failed to POST will-greenleaf:K562_CRISPR_tiling_reference-file 2020-02-28 15:41:41,908:eu_debug: <<<<<< DCC POST RESPONSE: 2020-02-28 15:41:41,908:eu_debug: { "@type": [ "ValidationFailure", "Error" ], "code": 422, "description": "Failed validation", "errors": [ { "description": "'reference' is not valid under any of the given schemas", "location": "body", "name": [ "output_type" ] } ], "status": "error", "title": "Unprocessable Entity" } 2020-03-02 07:00:25,851:eu_debug: Connecting to www.encodeproject.org 2020-03-02 07:00:25,868:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:25,868:eu_debug: submission=False: In non-submission mode. 2020-03-02 07:00:26,131:eu_debug: submission=True: In submission mode. 2020-03-02 07:00:26,140:eu_debug: IN post(). 2020-03-02 07:00:26,141:eu_debug: <<<<<< POST reference record will-greenleaf:K562_CRISPR_CTCF-growth_screen_reference To DCC with URL https://www.encodeproject.org/reference and this payload: { "aliases": [ "will-greenleaf:K562_CRISPR_CTCF-growth_screen_reference" ], "award": "/awards/UM1HG009436/", "lab": "/labs/will-greenleaf/", "reference_type": "functional elements" } 2020-03-02 07:00:26,141:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:30,480:eu_debug: Connecting to www.encodeproject.org 2020-03-02 07:00:30,482:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:30,482:eu_debug: submission=False: In non-submission mode. 2020-03-02 07:00:30,725:eu_debug: submission=True: In submission mode. 2020-03-02 07:00:30,737:eu_debug: IN post(). 2020-03-02 07:00:30,738:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T0 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T0" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF-growth_screen_reference" ], "lab": "/labs/will-greenleaf/" } 2020-03-02 07:00:30,738:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:30,738:eu_debug: IN post(). 2020-03-02 07:00:30,739:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T0 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T0" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF-growth_screen_reference" ], "lab": "/labs/will-greenleaf/" } 2020-03-02 07:00:30,739:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:30,739:eu_debug: IN post(). 2020-03-02 07:00:30,740:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T0 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T0" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF-growth_screen_reference" ], "lab": "/labs/will-greenleaf/" } 2020-03-02 07:00:30,740:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:30,740:eu_debug: IN post(). 2020-03-02 07:00:30,741:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T0 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T0" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF-growth_screen_reference" ], "lab": "/labs/will-greenleaf/" } 2020-03-02 07:00:30,741:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:30,741:eu_debug: IN post(). 2020-03-02 07:00:30,742:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF-growth_screen_reference" ], "lab": "/labs/will-greenleaf/" } 2020-03-02 07:00:30,742:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:30,742:eu_debug: IN post(). 2020-03-02 07:00:30,743:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF-growth_screen_reference" ], "lab": "/labs/will-greenleaf/" } 2020-03-02 07:00:30,743:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:30,743:eu_debug: IN post(). 2020-03-02 07:00:30,744:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF-growth_screen_reference" ], "lab": "/labs/will-greenleaf/" } 2020-03-02 07:00:30,744:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:30,744:eu_debug: IN post(). 2020-03-02 07:00:30,745:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF-growth_screen_reference" ], "lab": "/labs/will-greenleaf/" } 2020-03-02 07:00:30,745:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:35,262:eu_debug: Connecting to www.encodeproject.org 2020-03-02 07:00:35,263:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:35,263:eu_debug: submission=False: In non-submission mode. 2020-03-02 07:00:35,519:eu_debug: submission=True: In submission mode. 2020-03-02 07:00:35,530:eu_debug: IN post(). 2020-03-02 07:00:35,531:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T0-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T0-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:00:35,531:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:35,532:eu_debug: IN post(). 2020-03-02 07:00:35,532:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T0-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T0-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:00:35,532:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:35,533:eu_debug: IN post(). 2020-03-02 07:00:35,533:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T0-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T0-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:00:35,533:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:35,534:eu_debug: IN post(). 2020-03-02 07:00:35,534:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T0-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T0-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:00:35,534:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:35,534:eu_debug: IN post(). 2020-03-02 07:00:35,535:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T0-R2 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T0-R2" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:00:35,535:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:35,535:eu_debug: IN post(). 2020-03-02 07:00:35,536:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T0-R2 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T0-R2" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:00:35,536:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:35,536:eu_debug: IN post(). 2020-03-02 07:00:35,537:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T0-R2 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T0-R2" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:00:35,537:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:35,537:eu_debug: IN post(). 2020-03-02 07:00:35,538:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T0-R2 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T0-R2" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:00:35,538:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:35,538:eu_debug: IN post(). 2020-03-02 07:00:35,539:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T14-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T14-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:00:35,539:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:35,539:eu_debug: IN post(). 2020-03-02 07:00:35,540:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T14-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T14-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:00:35,540:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:35,540:eu_debug: IN post(). 2020-03-02 07:00:35,541:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T14-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T14-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:00:35,541:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:35,541:eu_debug: IN post(). 2020-03-02 07:00:35,541:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T14-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T14-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:00:35,542:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:35,542:eu_debug: IN post(). 2020-03-02 07:00:35,542:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T14-R2 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T14-R2" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:00:35,543:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:35,543:eu_debug: IN post(). 2020-03-02 07:00:35,543:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T14-R2 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T14-R2" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:00:35,543:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:35,544:eu_debug: IN post(). 2020-03-02 07:00:35,544:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T14-R2 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T14-R2" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:00:35,544:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:35,545:eu_debug: IN post(). 2020-03-02 07:00:35,545:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T14-R2 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T14-R2" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:00:35,545:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:39,256:eu_debug: Connecting to www.encodeproject.org 2020-03-02 07:00:39,257:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:39,257:eu_debug: submission=False: In non-submission mode. 2020-03-02 07:00:39,512:eu_debug: submission=True: In submission mode. 2020-03-02 07:00:39,520:eu_debug: IN post(). 2020-03-02 07:00:39,521:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T14-R1_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T14-R1_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T14-R1", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:00:39,521:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:39,521:eu_debug: IN post(). 2020-03-02 07:00:39,522:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T14-R2_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T14-R2_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T14-R2", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:00:39,522:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:39,522:eu_debug: IN post(). 2020-03-02 07:00:39,523:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T14-R1_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T14-R1_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T14-R1", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:00:39,523:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:39,523:eu_debug: IN post(). 2020-03-02 07:00:39,524:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T14-R2_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T14-R2_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T14-R2", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:00:39,524:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:39,524:eu_debug: IN post(). 2020-03-02 07:00:39,524:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T14-R1_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T14-R1_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T14-R1", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:00:39,525:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:39,525:eu_debug: IN post(). 2020-03-02 07:00:39,525:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T14-R2_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T14-R2_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T14-R2", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:00:39,525:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:39,526:eu_debug: IN post(). 2020-03-02 07:00:39,526:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T14-R1_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T14-R1_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T14-R1", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:00:39,526:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:39,526:eu_debug: IN post(). 2020-03-02 07:00:39,527:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T14-R2_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T14-R2_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T14-R2", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:00:39,527:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:39,527:eu_debug: IN post(). 2020-03-02 07:00:39,528:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T0-R1_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T0-R1_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T0-R1", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:00:39,528:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:39,528:eu_debug: IN post(). 2020-03-02 07:00:39,529:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T0-R1_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T0-R1_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T0-R1", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:00:39,529:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:39,529:eu_debug: IN post(). 2020-03-02 07:00:39,529:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T0-R1_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T0-R1_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T0-R1", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:00:39,530:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:39,530:eu_debug: IN post(). 2020-03-02 07:00:39,530:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T0-R1_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T0-R1_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T0-R1", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:00:39,530:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:39,531:eu_debug: IN post(). 2020-03-02 07:00:39,531:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T0-R2_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T0-R2_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T0-R2", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:00:39,531:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:39,531:eu_debug: IN post(). 2020-03-02 07:00:39,532:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T0-R2_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T0-R2_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T0-R2", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:00:39,532:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:39,532:eu_debug: IN post(). 2020-03-02 07:00:39,533:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T0-R2_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T0-R2_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T0-R2", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:00:39,533:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:39,533:eu_debug: IN post(). 2020-03-02 07:00:39,534:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T0-R2_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T0-R2_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T0-R2", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:00:39,534:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:42,806:eu_debug: Connecting to www.encodeproject.org 2020-03-02 07:00:42,807:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:42,808:eu_debug: submission=False: In non-submission mode. 2020-03-02 07:00:43,068:eu_debug: submission=True: In submission mode. 2020-03-02 07:00:43,079:eu_debug: IN post(). 2020-03-02 07:00:43,080:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T0-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T0-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T0", "library": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T0-R1_library", "technical_replicate_number": 1 } 2020-03-02 07:00:43,080:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:43,080:eu_debug: IN post(). 2020-03-02 07:00:43,080:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T0-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T0-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T0", "library": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T0-R1_library", "technical_replicate_number": 1 } 2020-03-02 07:00:43,081:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:43,081:eu_debug: IN post(). 2020-03-02 07:00:43,081:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T0-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T0-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T0", "library": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T0-R1_library", "technical_replicate_number": 1 } 2020-03-02 07:00:43,081:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:43,082:eu_debug: IN post(). 2020-03-02 07:00:43,082:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T0-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T0-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T0", "library": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T0-R1_library", "technical_replicate_number": 1 } 2020-03-02 07:00:43,082:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:43,082:eu_debug: IN post(). 2020-03-02 07:00:43,083:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T0-R2_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T0-R2_T1" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T0", "library": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T0-R2_library", "technical_replicate_number": 1 } 2020-03-02 07:00:43,083:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:43,083:eu_debug: IN post(). 2020-03-02 07:00:43,084:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T0-R2_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T0-R2_T1" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T0", "library": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T0-R2_library", "technical_replicate_number": 1 } 2020-03-02 07:00:43,084:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:43,084:eu_debug: IN post(). 2020-03-02 07:00:43,085:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T0-R2_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T0-R2_T1" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T0", "library": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T0-R2_library", "technical_replicate_number": 1 } 2020-03-02 07:00:43,085:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:43,085:eu_debug: IN post(). 2020-03-02 07:00:43,085:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T0-R2_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T0-R2_T1" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T0", "library": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T0-R2_library", "technical_replicate_number": 1 } 2020-03-02 07:00:43,085:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:43,086:eu_debug: IN post(). 2020-03-02 07:00:43,086:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T14-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T14-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14", "library": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T14-R1_library", "technical_replicate_number": 1 } 2020-03-02 07:00:43,086:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:43,087:eu_debug: IN post(). 2020-03-02 07:00:43,087:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T14-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T14-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14", "library": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T14-R1_library", "technical_replicate_number": 1 } 2020-03-02 07:00:43,087:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:43,087:eu_debug: IN post(). 2020-03-02 07:00:43,088:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T14-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T14-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14", "library": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T14-R1_library", "technical_replicate_number": 1 } 2020-03-02 07:00:43,088:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:43,088:eu_debug: IN post(). 2020-03-02 07:00:43,089:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T14-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T14-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14", "library": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T14-R1_library", "technical_replicate_number": 1 } 2020-03-02 07:00:43,089:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:43,089:eu_debug: IN post(). 2020-03-02 07:00:43,089:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T14-R2_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T14-R2_T1" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14", "library": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T14-R2_library", "technical_replicate_number": 1 } 2020-03-02 07:00:43,090:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:43,090:eu_debug: IN post(). 2020-03-02 07:00:43,090:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T14-R2_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T14-R2_T1" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14", "library": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T14-R2_library", "technical_replicate_number": 1 } 2020-03-02 07:00:43,090:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:43,091:eu_debug: IN post(). 2020-03-02 07:00:43,091:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T14-R2_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T14-R2_T1" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14", "library": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T14-R2_library", "technical_replicate_number": 1 } 2020-03-02 07:00:43,091:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:43,091:eu_debug: IN post(). 2020-03-02 07:00:43,092:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T14-R2_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T14-R2_T1" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14", "library": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T14-R2_library", "technical_replicate_number": 1 } 2020-03-02 07:00:43,092:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:47,218:eu_debug: Connecting to www.encodeproject.org 2020-03-02 07:00:47,219:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:47,219:eu_debug: submission=False: In non-submission mode. 2020-03-02 07:00:47,537:eu_debug: submission=True: In submission mode. 2020-03-02 07:00:47,547:eu_debug: IN post(). 2020-03-02 07:00:50,671:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 149766493, "lab": "/labs/will-greenleaf/", "md5sum": "0f970ce2a05775d757602402acc7127d", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T0-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1435.fastq.gz" } 2020-03-02 07:00:50,672:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:50,672:eu_debug: IN post(). 2020-03-02 07:00:53,687:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 141156037, "lab": "/labs/will-greenleaf/", "md5sum": "893e12bafdbd69dd96066024a90f6bb3", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T0-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1761.fastq.gz" } 2020-03-02 07:00:53,688:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:53,743:eu_debug: IN post(). 2020-03-02 07:00:53,762:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 15376, "lab": "/labs/will-greenleaf/", "md5sum": "5177729b51ad0af8b1356c38d75f691b", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T0-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1763.fastq.gz" } 2020-03-02 07:00:53,763:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:53,763:eu_debug: IN post(). 2020-03-02 07:00:56,105:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 137025878, "lab": "/labs/will-greenleaf/", "md5sum": "e5e28bbc5aad57a6cc3197f29610b44a", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T0-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1437.fastq.gz" } 2020-03-02 07:00:56,105:eu_debug: DRY RUN is enabled. 2020-03-02 07:00:56,105:eu_debug: IN post(). 2020-03-02 07:01:04,092:eu_debug: Connecting to www.encodeproject.org 2020-03-02 07:01:04,093:eu_debug: submission=False: In non-submission mode. 2020-03-02 07:01:04,350:eu_debug: submission=True: In submission mode. 2020-03-02 07:01:04,361:eu_debug: IN post(). 2020-03-02 07:01:04,362:eu_debug: <<<<<< POST reference record will-greenleaf:K562_CRISPR_CTCF-growth_screen_reference To DCC with URL https://www.encodeproject.org/reference and this payload: { "aliases": [ "will-greenleaf:K562_CRISPR_CTCF-growth_screen_reference" ], "award": "/awards/UM1HG009436/", "lab": "/labs/will-greenleaf/", "reference_type": "functional elements" } 2020-03-02 07:01:04,482:eu_debug: Success. 2020-03-02 07:01:08,416:eu_debug: Connecting to www.encodeproject.org 2020-03-02 07:01:08,417:eu_debug: submission=False: In non-submission mode. 2020-03-02 07:01:08,666:eu_debug: submission=True: In submission mode. 2020-03-02 07:01:08,678:eu_debug: IN post(). 2020-03-02 07:01:08,679:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T0 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T0" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF-growth_screen_reference" ], "lab": "/labs/will-greenleaf/" } 2020-03-02 07:01:08,814:eu_debug: Success. 2020-03-02 07:01:08,814:eu_debug: IN post(). 2020-03-02 07:01:08,815:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T0 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T0" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF-growth_screen_reference" ], "lab": "/labs/will-greenleaf/" } 2020-03-02 07:01:08,950:eu_debug: Success. 2020-03-02 07:01:08,950:eu_debug: IN post(). 2020-03-02 07:01:08,951:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T0 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T0" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF-growth_screen_reference" ], "lab": "/labs/will-greenleaf/" } 2020-03-02 07:01:09,081:eu_debug: Success. 2020-03-02 07:01:09,081:eu_debug: IN post(). 2020-03-02 07:01:09,082:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T0 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T0" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF-growth_screen_reference" ], "lab": "/labs/will-greenleaf/" } 2020-03-02 07:01:09,208:eu_debug: Success. 2020-03-02 07:01:09,208:eu_debug: IN post(). 2020-03-02 07:01:09,209:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF-growth_screen_reference" ], "lab": "/labs/will-greenleaf/" } 2020-03-02 07:01:09,332:eu_debug: Success. 2020-03-02 07:01:09,391:eu_debug: IN post(). 2020-03-02 07:01:09,392:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF-growth_screen_reference" ], "lab": "/labs/will-greenleaf/" } 2020-03-02 07:01:09,503:eu_debug: Success. 2020-03-02 07:01:09,504:eu_debug: IN post(). 2020-03-02 07:01:09,504:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF-growth_screen_reference" ], "lab": "/labs/will-greenleaf/" } 2020-03-02 07:01:09,631:eu_debug: Success. 2020-03-02 07:01:09,632:eu_debug: IN post(). 2020-03-02 07:01:09,632:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF-growth_screen_reference" ], "lab": "/labs/will-greenleaf/" } 2020-03-02 07:01:09,749:eu_debug: Success. 2020-03-02 07:01:13,282:eu_debug: Connecting to www.encodeproject.org 2020-03-02 07:01:13,283:eu_debug: submission=False: In non-submission mode. 2020-03-02 07:01:13,508:eu_debug: submission=True: In submission mode. 2020-03-02 07:01:13,517:eu_debug: IN post(). 2020-03-02 07:01:13,518:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T0-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T0-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:01:13,756:eu_debug: Success. 2020-03-02 07:01:13,756:eu_debug: IN post(). 2020-03-02 07:01:13,757:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T0-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T0-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:01:14,005:eu_debug: Success. 2020-03-02 07:01:14,005:eu_debug: IN post(). 2020-03-02 07:01:14,006:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T0-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T0-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:01:15,166:eu_debug: Success. 2020-03-02 07:01:15,166:eu_debug: IN post(). 2020-03-02 07:01:15,167:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T0-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T0-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:01:15,409:eu_debug: Success. 2020-03-02 07:01:15,410:eu_debug: IN post(). 2020-03-02 07:01:15,410:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T0-R2 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T0-R2" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:01:15,651:eu_debug: Success. 2020-03-02 07:01:15,652:eu_debug: IN post(). 2020-03-02 07:01:15,652:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T0-R2 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T0-R2" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:01:15,885:eu_debug: Success. 2020-03-02 07:01:15,886:eu_debug: IN post(). 2020-03-02 07:01:15,886:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T0-R2 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T0-R2" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:01:16,126:eu_debug: Success. 2020-03-02 07:01:16,127:eu_debug: IN post(). 2020-03-02 07:01:16,127:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T0-R2 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T0-R2" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:01:16,364:eu_debug: Success. 2020-03-02 07:01:16,365:eu_debug: IN post(). 2020-03-02 07:01:16,365:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T14-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T14-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:01:16,906:eu_debug: Success. 2020-03-02 07:01:16,907:eu_debug: IN post(). 2020-03-02 07:01:16,907:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T14-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T14-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:01:17,146:eu_debug: Success. 2020-03-02 07:01:17,146:eu_debug: IN post(). 2020-03-02 07:01:17,147:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T14-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T14-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:01:17,380:eu_debug: Success. 2020-03-02 07:01:17,381:eu_debug: IN post(). 2020-03-02 07:01:17,381:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T14-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T14-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:01:17,622:eu_debug: Success. 2020-03-02 07:01:17,624:eu_debug: IN post(). 2020-03-02 07:01:17,624:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T14-R2 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T14-R2" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:01:18,267:eu_debug: Success. 2020-03-02 07:01:18,267:eu_debug: IN post(). 2020-03-02 07:01:18,268:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T14-R2 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T14-R2" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:01:18,508:eu_debug: Success. 2020-03-02 07:01:18,509:eu_debug: IN post(). 2020-03-02 07:01:18,509:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T14-R2 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T14-R2" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:01:18,754:eu_debug: Success. 2020-03-02 07:01:18,754:eu_debug: IN post(). 2020-03-02 07:01:18,755:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T14-R2 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T14-R2" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:01:18,992:eu_debug: Success. 2020-03-02 07:01:21,406:eu_debug: Connecting to www.encodeproject.org 2020-03-02 07:01:21,407:eu_debug: submission=False: In non-submission mode. 2020-03-02 07:01:21,647:eu_debug: submission=True: In submission mode. 2020-03-02 07:01:21,659:eu_debug: IN post(). 2020-03-02 07:01:21,660:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T14-R1_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T14-R1_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T14-R1", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:01:21,771:eu_debug: Success. 2020-03-02 07:01:21,772:eu_debug: IN post(). 2020-03-02 07:01:21,772:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T14-R2_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T14-R2_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T14-R2", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:01:21,883:eu_debug: Success. 2020-03-02 07:01:21,883:eu_debug: IN post(). 2020-03-02 07:01:21,884:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T14-R1_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T14-R1_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T14-R1", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:01:22,001:eu_debug: Success. 2020-03-02 07:01:22,001:eu_debug: IN post(). 2020-03-02 07:01:22,002:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T14-R2_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T14-R2_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T14-R2", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:01:22,114:eu_debug: Success. 2020-03-02 07:01:22,114:eu_debug: IN post(). 2020-03-02 07:01:22,115:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T14-R1_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T14-R1_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T14-R1", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:01:22,230:eu_debug: Success. 2020-03-02 07:01:22,231:eu_debug: IN post(). 2020-03-02 07:01:22,231:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T14-R2_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T14-R2_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T14-R2", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:01:22,349:eu_debug: Success. 2020-03-02 07:01:22,349:eu_debug: IN post(). 2020-03-02 07:01:22,350:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T14-R1_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T14-R1_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T14-R1", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:01:22,467:eu_debug: Success. 2020-03-02 07:01:22,468:eu_debug: IN post(). 2020-03-02 07:01:22,468:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T14-R2_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T14-R2_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T14-R2", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:01:22,585:eu_debug: Success. 2020-03-02 07:01:22,585:eu_debug: IN post(). 2020-03-02 07:01:22,586:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T0-R1_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T0-R1_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T0-R1", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:01:22,695:eu_debug: Success. 2020-03-02 07:01:22,696:eu_debug: IN post(). 2020-03-02 07:01:22,697:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T0-R1_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T0-R1_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T0-R1", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:01:22,813:eu_debug: Success. 2020-03-02 07:01:22,813:eu_debug: IN post(). 2020-03-02 07:01:22,814:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T0-R1_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T0-R1_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T0-R1", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:01:22,926:eu_debug: Success. 2020-03-02 07:01:22,927:eu_debug: IN post(). 2020-03-02 07:01:22,927:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T0-R1_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T0-R1_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T0-R1", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:01:23,039:eu_debug: Success. 2020-03-02 07:01:23,040:eu_debug: IN post(). 2020-03-02 07:01:23,040:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T0-R2_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T0-R2_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T0-R2", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:01:23,154:eu_debug: Success. 2020-03-02 07:01:23,154:eu_debug: IN post(). 2020-03-02 07:01:23,155:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T0-R2_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T0-R2_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T0-R2", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:01:23,262:eu_debug: Success. 2020-03-02 07:01:23,262:eu_debug: IN post(). 2020-03-02 07:01:23,263:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T0-R2_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T0-R2_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T0-R2", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:01:23,378:eu_debug: Success. 2020-03-02 07:01:23,378:eu_debug: IN post(). 2020-03-02 07:01:23,379:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T0-R2_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T0-R2_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T0-R2", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:01:23,493:eu_debug: Success. 2020-03-02 07:01:27,025:eu_debug: Connecting to www.encodeproject.org 2020-03-02 07:01:27,026:eu_debug: submission=False: In non-submission mode. 2020-03-02 07:01:27,260:eu_debug: submission=True: In submission mode. 2020-03-02 07:01:27,271:eu_debug: IN post(). 2020-03-02 07:01:27,272:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T0-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T0-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T0", "library": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T0-R1_library", "technical_replicate_number": 1 } 2020-03-02 07:01:27,382:eu_debug: Success. 2020-03-02 07:01:27,382:eu_debug: IN post(). 2020-03-02 07:01:27,383:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T0-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T0-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T0", "library": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T0-R1_library", "technical_replicate_number": 1 } 2020-03-02 07:01:27,488:eu_debug: Success. 2020-03-02 07:01:27,488:eu_debug: IN post(). 2020-03-02 07:01:27,489:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T0-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T0-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T0", "library": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T0-R1_library", "technical_replicate_number": 1 } 2020-03-02 07:01:27,596:eu_debug: Success. 2020-03-02 07:01:27,596:eu_debug: IN post(). 2020-03-02 07:01:27,596:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T0-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T0-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T0", "library": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T0-R1_library", "technical_replicate_number": 1 } 2020-03-02 07:01:27,700:eu_debug: Success. 2020-03-02 07:01:27,701:eu_debug: IN post(). 2020-03-02 07:01:27,701:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T0-R2_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T0-R2_T1" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T0", "library": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T0-R2_library", "technical_replicate_number": 1 } 2020-03-02 07:01:27,812:eu_debug: Success. 2020-03-02 07:01:27,812:eu_debug: IN post(). 2020-03-02 07:01:27,813:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T0-R2_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T0-R2_T1" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T0", "library": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T0-R2_library", "technical_replicate_number": 1 } 2020-03-02 07:01:27,926:eu_debug: Success. 2020-03-02 07:01:27,926:eu_debug: IN post(). 2020-03-02 07:01:27,927:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T0-R2_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T0-R2_T1" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T0", "library": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T0-R2_library", "technical_replicate_number": 1 } 2020-03-02 07:01:28,034:eu_debug: Success. 2020-03-02 07:01:28,034:eu_debug: IN post(). 2020-03-02 07:01:28,035:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T0-R2_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T0-R2_T1" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T0", "library": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T0-R2_library", "technical_replicate_number": 1 } 2020-03-02 07:01:28,144:eu_debug: Success. 2020-03-02 07:01:28,144:eu_debug: IN post(). 2020-03-02 07:01:28,145:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T14-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T14-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14", "library": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T14-R1_library", "technical_replicate_number": 1 } 2020-03-02 07:01:28,257:eu_debug: Success. 2020-03-02 07:01:28,258:eu_debug: IN post(). 2020-03-02 07:01:28,258:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T14-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T14-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14", "library": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T14-R1_library", "technical_replicate_number": 1 } 2020-03-02 07:01:28,368:eu_debug: Success. 2020-03-02 07:01:28,368:eu_debug: IN post(). 2020-03-02 07:01:28,369:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T14-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T14-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14", "library": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T14-R1_library", "technical_replicate_number": 1 } 2020-03-02 07:01:28,474:eu_debug: Success. 2020-03-02 07:01:28,474:eu_debug: IN post(). 2020-03-02 07:01:28,475:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T14-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T14-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14", "library": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T14-R1_library", "technical_replicate_number": 1 } 2020-03-02 07:01:28,584:eu_debug: Success. 2020-03-02 07:01:28,585:eu_debug: IN post(). 2020-03-02 07:01:28,585:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T14-R2_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T14-R2_T1" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14", "library": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T14-R2_library", "technical_replicate_number": 1 } 2020-03-02 07:01:28,695:eu_debug: Success. 2020-03-02 07:01:28,696:eu_debug: IN post(). 2020-03-02 07:01:28,696:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T14-R2_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T14-R2_T1" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14", "library": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T14-R2_library", "technical_replicate_number": 1 } 2020-03-02 07:01:28,806:eu_debug: Success. 2020-03-02 07:01:28,807:eu_debug: IN post(). 2020-03-02 07:01:28,807:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T14-R2_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T14-R2_T1" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14", "library": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T14-R2_library", "technical_replicate_number": 1 } 2020-03-02 07:01:28,910:eu_debug: Success. 2020-03-02 07:01:28,910:eu_debug: IN post(). 2020-03-02 07:01:28,911:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T14-R2_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T14-R2_T1" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14", "library": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T14-R2_library", "technical_replicate_number": 1 } 2020-03-02 07:01:29,022:eu_debug: Success. 2020-03-02 07:01:32,358:eu_debug: Connecting to www.encodeproject.org 2020-03-02 07:01:32,359:eu_debug: submission=False: In non-submission mode. 2020-03-02 07:01:32,594:eu_debug: submission=True: In submission mode. 2020-03-02 07:01:32,603:eu_debug: IN post(). 2020-03-02 07:01:32,903:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 149766493, "lab": "/labs/will-greenleaf/", "md5sum": "0f970ce2a05775d757602402acc7127d", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T0-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1435.fastq.gz" } 2020-03-02 07:01:34,197:eu_debug: Success. 2020-03-02 07:01:34,197:eu_debug: IN upload_file() 2020-03-02 07:01:34,197:eu_debug: Attempting to generate new file upload credentials 2020-03-02 07:01:34,712:eu_debug: Success: upload credentials for 'ENCFF177ZDZ' regenerated. 2020-03-02 07:01:34,713:eu_debug: >>>>>>GET ENCFF177ZDZ From DCC with URL https://www.encodeproject.org/ENCFF177ZDZ/?format=json&datastore=database 2020-03-02 07:01:35,196:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF.growth_screen.1435.fastq.gz s3://encode-files/2020/03/02/16b7129c-e05e-498c-80d3-e338dacc41c7/ENCFF177ZDZ.fastq.gz'. 2020-03-02 07:01:41,223:eu_debug: AWS upload successful. 2020-03-02 07:01:41,225:eu_debug: IN post(). 2020-03-02 07:01:41,502:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 141156037, "lab": "/labs/will-greenleaf/", "md5sum": "893e12bafdbd69dd96066024a90f6bb3", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T0-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1761.fastq.gz" } 2020-03-02 07:01:42,006:eu_debug: Success. 2020-03-02 07:01:42,007:eu_debug: IN upload_file() 2020-03-02 07:01:42,007:eu_debug: Attempting to generate new file upload credentials 2020-03-02 07:01:42,479:eu_debug: Success: upload credentials for 'ENCFF705NZF' regenerated. 2020-03-02 07:01:42,480:eu_debug: >>>>>>GET ENCFF705NZF From DCC with URL https://www.encodeproject.org/ENCFF705NZF/?format=json&datastore=database 2020-03-02 07:01:43,361:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF.growth_screen.1761.fastq.gz s3://encode-files/2020/03/02/43aa5a12-0798-4b47-be27-cc8d2a310ff1/ENCFF705NZF.fastq.gz'. 2020-03-02 07:01:49,171:eu_debug: AWS upload successful. 2020-03-02 07:01:49,173:eu_debug: IN post(). 2020-03-02 07:01:49,176:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 15376, "lab": "/labs/will-greenleaf/", "md5sum": "5177729b51ad0af8b1356c38d75f691b", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T0-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1763.fastq.gz" } 2020-03-02 07:01:49,699:eu_debug: Success. 2020-03-02 07:01:49,700:eu_debug: IN upload_file() 2020-03-02 07:01:49,700:eu_debug: Attempting to generate new file upload credentials 2020-03-02 07:01:50,178:eu_debug: Success: upload credentials for 'ENCFF925KGA' regenerated. 2020-03-02 07:01:50,178:eu_debug: >>>>>>GET ENCFF925KGA From DCC with URL https://www.encodeproject.org/ENCFF925KGA/?format=json&datastore=database 2020-03-02 07:01:50,658:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF.growth_screen.1763.fastq.gz s3://encode-files/2020/03/02/78e519f3-43e4-498a-bca9-0f0f458dd672/ENCFF925KGA.fastq.gz'. 2020-03-02 07:01:52,240:eu_debug: AWS upload successful. 2020-03-02 07:01:52,241:eu_debug: IN post(). 2020-03-02 07:01:52,520:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 137025878, "lab": "/labs/will-greenleaf/", "md5sum": "e5e28bbc5aad57a6cc3197f29610b44a", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T0-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1437.fastq.gz" } 2020-03-02 07:01:53,040:eu_debug: Success. 2020-03-02 07:01:53,041:eu_debug: IN upload_file() 2020-03-02 07:01:53,041:eu_debug: Attempting to generate new file upload credentials 2020-03-02 07:01:53,516:eu_debug: Success: upload credentials for 'ENCFF108RHK' regenerated. 2020-03-02 07:01:53,516:eu_debug: >>>>>>GET ENCFF108RHK From DCC with URL https://www.encodeproject.org/ENCFF108RHK/?format=json&datastore=database 2020-03-02 07:01:54,007:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF.growth_screen.1437.fastq.gz s3://encode-files/2020/03/02/c88f966f-f92d-49b8-80f1-2202515551b9/ENCFF108RHK.fastq.gz'. 2020-03-02 07:01:59,831:eu_debug: AWS upload successful. 2020-03-02 07:01:59,833:eu_debug: IN post(). 2020-03-02 07:02:01,579:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 135328609, "lab": "/labs/will-greenleaf/", "md5sum": "ea6bbfa2448c36d49317dfb30c1e7cba", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T0-R2_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1436.fastq.gz" } 2020-03-02 07:02:02,066:eu_debug: {'code': 409, 'title': 'Conflict', 'status': 'error', 'detail': "Keys conflict: [('alias', 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0.fastq.gz')]", 'description': 'There was a conflict when trying to complete your request.', '@type': ['HTTPConflict', 'Error']} 2020-03-02 07:02:02,067:eu_debug: >>>>>>GET will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0.fastq.gz From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0.fastq.gz/?format=json&datastore=database 2020-03-02 07:02:02,556:eu_debug: Will not POST 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0.fastq.gz' since it already exists with aliases '['will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0.fastq.gz']'. 2020-03-02 07:02:02,557:eu_debug: IN post(). 2020-03-02 07:02:02,567:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 17111, "lab": "/labs/will-greenleaf/", "md5sum": "fe24c7bdf0c8cd5b7ccde2b3bad41f3a", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T0-R2_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1762.fastq.gz" } 2020-03-02 07:02:03,028:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'code': 409, 'status': 'error', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0.fastq.gz')]", 'title': 'Conflict'} 2020-03-02 07:02:03,028:eu_debug: >>>>>>GET will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0.fastq.gz From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0.fastq.gz/?format=json&datastore=database 2020-03-02 07:02:03,892:eu_debug: Will not POST 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0.fastq.gz' since it already exists with aliases '['will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0.fastq.gz']'. 2020-03-02 07:02:03,893:eu_debug: IN post(). 2020-03-02 07:02:06,531:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 171787825, "lab": "/labs/will-greenleaf/", "md5sum": "2c03857e62f6c27742678691bc99d4f8", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T0-R2_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1764.fastq.gz" } 2020-03-02 07:02:07,014:eu_debug: {'detail': "Keys conflict: [('alias', 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0.fastq.gz')]", 'description': 'There was a conflict when trying to complete your request.', '@type': ['HTTPConflict', 'Error'], 'code': 409, 'status': 'error', 'title': 'Conflict'} 2020-03-02 07:02:07,014:eu_debug: >>>>>>GET will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0.fastq.gz From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0.fastq.gz/?format=json&datastore=database 2020-03-02 07:02:07,499:eu_debug: Will not POST 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0.fastq.gz' since it already exists with aliases '['will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0.fastq.gz']'. 2020-03-02 07:02:07,499:eu_debug: IN post(). 2020-03-02 07:02:09,220:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 121260141, "lab": "/labs/will-greenleaf/", "md5sum": "1ef398c632df68ba289828678fe91d2e", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T0-R2_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1438.fastq.gz" } 2020-03-02 07:02:09,704:eu_debug: {'code': 409, 'title': 'Conflict', 'status': 'error', 'detail': "Keys conflict: [('alias', 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0.fastq.gz')]", 'description': 'There was a conflict when trying to complete your request.', '@type': ['HTTPConflict', 'Error']} 2020-03-02 07:02:09,705:eu_debug: >>>>>>GET will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0.fastq.gz From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0.fastq.gz/?format=json&datastore=database 2020-03-02 07:02:10,191:eu_debug: Will not POST 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0.fastq.gz' since it already exists with aliases '['will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0.fastq.gz']'. 2020-03-02 07:02:10,193:eu_debug: IN post(). 2020-03-02 07:02:12,328:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14", "file_format": "fastq", "file_size": 130810210, "lab": "/labs/will-greenleaf/", "md5sum": "e7711e3d21c5ee7c42b07aa941c60469", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T14-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1766.fastq.gz" } 2020-03-02 07:02:12,878:eu_debug: Success. 2020-03-02 07:02:12,879:eu_debug: IN upload_file() 2020-03-02 07:02:12,879:eu_debug: Attempting to generate new file upload credentials 2020-03-02 07:02:13,387:eu_debug: Success: upload credentials for 'ENCFF854ZKJ' regenerated. 2020-03-02 07:02:13,388:eu_debug: >>>>>>GET ENCFF854ZKJ From DCC with URL https://www.encodeproject.org/ENCFF854ZKJ/?format=json&datastore=database 2020-03-02 07:02:13,967:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF.growth_screen.1766.fastq.gz s3://encode-files/2020/03/02/b859ade9-90e7-4c59-a3bf-403bea492562/ENCFF854ZKJ.fastq.gz'. 2020-03-02 07:02:23,318:eu_debug: AWS upload successful. 2020-03-02 07:02:23,320:eu_debug: IN post(). 2020-03-02 07:02:27,146:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep2.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep2.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14", "file_format": "fastq", "file_size": 240033220, "lab": "/labs/will-greenleaf/", "md5sum": "c7ef684da35befe84d5b0caa6c6fadf7", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T14-R2_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1767.fastq.gz" } 2020-03-02 07:02:27,627:eu_debug: Success. 2020-03-02 07:02:27,628:eu_debug: IN upload_file() 2020-03-02 07:02:27,628:eu_debug: Attempting to generate new file upload credentials 2020-03-02 07:02:28,136:eu_debug: Success: upload credentials for 'ENCFF611DLH' regenerated. 2020-03-02 07:02:28,136:eu_debug: >>>>>>GET ENCFF611DLH From DCC with URL https://www.encodeproject.org/ENCFF611DLH/?format=json&datastore=database 2020-03-02 07:02:28,636:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF.growth_screen.1767.fastq.gz s3://encode-files/2020/03/02/2b7d8922-1125-4aaf-9d42-4da418e947ee/ENCFF611DLH.fastq.gz'. 2020-03-02 07:02:34,522:eu_debug: AWS upload successful. 2020-03-02 07:02:34,524:eu_debug: IN post(). 2020-03-02 07:02:36,606:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14", "file_format": "fastq", "file_size": 142701831, "lab": "/labs/will-greenleaf/", "md5sum": "e4effa78a8a12d202770d16f9511b3f5", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T14-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1770.fastq.gz" } 2020-03-02 07:02:37,094:eu_debug: Success. 2020-03-02 07:02:37,095:eu_debug: IN upload_file() 2020-03-02 07:02:37,095:eu_debug: Attempting to generate new file upload credentials 2020-03-02 07:02:37,587:eu_debug: Success: upload credentials for 'ENCFF513PUQ' regenerated. 2020-03-02 07:02:37,588:eu_debug: >>>>>>GET ENCFF513PUQ From DCC with URL https://www.encodeproject.org/ENCFF513PUQ/?format=json&datastore=database 2020-03-02 07:02:38,072:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF.growth_screen.1770.fastq.gz s3://encode-files/2020/03/02/2520bb82-47f4-4106-b686-78f0eb749c88/ENCFF513PUQ.fastq.gz'. 2020-03-02 07:02:43,716:eu_debug: AWS upload successful. 2020-03-02 07:02:43,718:eu_debug: IN post(). 2020-03-02 07:02:45,304:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep2.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep2.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14", "file_format": "fastq", "file_size": 110554118, "lab": "/labs/will-greenleaf/", "md5sum": "d9a177d9b57bb8dd7964e2c69981dfaf", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T14-R2_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1793.fastq.gz" } 2020-03-02 07:02:45,812:eu_debug: Success. 2020-03-02 07:02:45,814:eu_debug: IN upload_file() 2020-03-02 07:02:45,814:eu_debug: Attempting to generate new file upload credentials 2020-03-02 07:02:46,292:eu_debug: Success: upload credentials for 'ENCFF388OFJ' regenerated. 2020-03-02 07:02:46,293:eu_debug: >>>>>>GET ENCFF388OFJ From DCC with URL https://www.encodeproject.org/ENCFF388OFJ/?format=json&datastore=database 2020-03-02 07:02:46,784:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF.growth_screen.1793.fastq.gz s3://encode-files/2020/03/02/f3be2046-301c-484a-befd-4c2d5219710c/ENCFF388OFJ.fastq.gz'. 2020-03-02 07:02:51,196:eu_debug: AWS upload successful. 2020-03-02 07:02:51,198:eu_debug: IN post(). 2020-03-02 07:02:53,232:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14", "file_format": "fastq", "file_size": 125718661, "lab": "/labs/will-greenleaf/", "md5sum": "22381b23ca56f664c1fbdd5054ffc136", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T14-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1794.fastq.gz" } 2020-03-02 07:02:53,708:eu_debug: Success. 2020-03-02 07:02:53,709:eu_debug: IN upload_file() 2020-03-02 07:02:53,709:eu_debug: Attempting to generate new file upload credentials 2020-03-02 07:02:54,189:eu_debug: Success: upload credentials for 'ENCFF525BGO' regenerated. 2020-03-02 07:02:54,190:eu_debug: >>>>>>GET ENCFF525BGO From DCC with URL https://www.encodeproject.org/ENCFF525BGO/?format=json&datastore=database 2020-03-02 07:02:55,074:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF.growth_screen.1794.fastq.gz s3://encode-files/2020/03/02/d48ddddb-fab9-442c-a679-72e0cbef1cb3/ENCFF525BGO.fastq.gz'. 2020-03-02 07:03:00,920:eu_debug: AWS upload successful. 2020-03-02 07:03:00,922:eu_debug: IN post(). 2020-03-02 07:03:03,313:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep2.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep2.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14", "file_format": "fastq", "file_size": 147615901, "lab": "/labs/will-greenleaf/", "md5sum": "8d049574f9108f428c436bcec5ca9120", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T14-R2_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1795.fastq.gz" } 2020-03-02 07:03:03,801:eu_debug: Success. 2020-03-02 07:03:03,802:eu_debug: IN upload_file() 2020-03-02 07:03:03,802:eu_debug: Attempting to generate new file upload credentials 2020-03-02 07:03:04,298:eu_debug: Success: upload credentials for 'ENCFF883ILD' regenerated. 2020-03-02 07:03:04,298:eu_debug: >>>>>>GET ENCFF883ILD From DCC with URL https://www.encodeproject.org/ENCFF883ILD/?format=json&datastore=database 2020-03-02 07:03:04,788:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF.growth_screen.1795.fastq.gz s3://encode-files/2020/03/02/df2bfdb6-2ec5-4ea2-8d2c-75f9e97e9ff7/ENCFF883ILD.fastq.gz'. 2020-03-02 07:03:10,249:eu_debug: AWS upload successful. 2020-03-02 07:03:10,251:eu_debug: IN post(). 2020-03-02 07:03:14,112:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14", "file_format": "fastq", "file_size": 251135684, "lab": "/labs/will-greenleaf/", "md5sum": "ea5231b88994d173905da429187c13ed", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T14-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1768.fastq.gz" } 2020-03-02 07:03:14,648:eu_debug: Success. 2020-03-02 07:03:14,649:eu_debug: IN upload_file() 2020-03-02 07:03:14,649:eu_debug: Attempting to generate new file upload credentials 2020-03-02 07:03:15,194:eu_debug: Success: upload credentials for 'ENCFF040OYQ' regenerated. 2020-03-02 07:03:15,194:eu_debug: >>>>>>GET ENCFF040OYQ From DCC with URL https://www.encodeproject.org/ENCFF040OYQ/?format=json&datastore=database 2020-03-02 07:03:15,914:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF.growth_screen.1768.fastq.gz s3://encode-files/2020/03/02/8f7c7827-cbc8-4f8e-ba30-0570c489ea61/ENCFF040OYQ.fastq.gz'. 2020-03-02 07:03:22,059:eu_debug: AWS upload successful. 2020-03-02 07:03:22,061:eu_debug: IN post(). 2020-03-02 07:03:24,138:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep2.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep2.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14", "file_format": "fastq", "file_size": 140951012, "lab": "/labs/will-greenleaf/", "md5sum": "df1b2b6b4e9037d8484bcf78c10bf7ee", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T14-R2_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1769.fastq.gz" } 2020-03-02 07:03:24,635:eu_debug: Success. 2020-03-02 07:03:24,636:eu_debug: IN upload_file() 2020-03-02 07:03:24,637:eu_debug: Attempting to generate new file upload credentials 2020-03-02 07:03:25,105:eu_debug: Success: upload credentials for 'ENCFF843PSQ' regenerated. 2020-03-02 07:03:25,105:eu_debug: >>>>>>GET ENCFF843PSQ From DCC with URL https://www.encodeproject.org/ENCFF843PSQ/?format=json&datastore=database 2020-03-02 07:03:25,598:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF.growth_screen.1769.fastq.gz s3://encode-files/2020/03/02/a96b6fb9-652f-40c4-a841-d9e9d02462e6/ENCFF843PSQ.fastq.gz'. 2020-03-02 07:03:30,865:eu_debug: AWS upload successful. 2020-03-02 07:11:19,441:eu_debug: Connecting to www.encodeproject.org 2020-03-02 07:11:19,442:eu_debug: DRY RUN is enabled. 2020-03-02 07:11:19,442:eu_debug: submission=False: In non-submission mode. 2020-03-02 07:11:19,678:eu_debug: submission=True: In submission mode. 2020-03-02 07:11:19,690:eu_debug: IN post(). 2020-03-02 07:11:19,691:eu_debug: <<<<<< POST reference record will-greenleaf:K562_CRISPR_CTCF-FineMap_reference To DCC with URL https://www.encodeproject.org/reference and this payload: { "aliases": [ "will-greenleaf:K562_CRISPR_CTCF-FineMap_reference" ], "award": "/awards/UM1HG009436/", "lab": "/labs/will-greenleaf/", "reference_type": "functional elements" } 2020-03-02 07:11:19,691:eu_debug: DRY RUN is enabled. 2020-03-02 07:11:22,472:eu_debug: Connecting to www.encodeproject.org 2020-03-02 07:11:22,473:eu_debug: DRY RUN is enabled. 2020-03-02 07:11:22,473:eu_debug: submission=False: In non-submission mode. 2020-03-02 07:11:22,732:eu_debug: submission=True: In submission mode. 2020-03-02 07:11:22,744:eu_debug: IN post(). 2020-03-02 07:11:22,745:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CTCF-FineMap_Plasmid To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CTCF-FineMap_Plasmid" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF-FineMap_reference" ], "lab": "/labs/will-greenleaf/" } 2020-03-02 07:11:22,745:eu_debug: DRY RUN is enabled. 2020-03-02 07:11:22,746:eu_debug: IN post(). 2020-03-02 07:11:22,746:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRk_CTCF-FineMap-T6 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T6" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF-FineMap_reference" ], "lab": "/labs/will-greenleaf/" } 2020-03-02 07:11:22,746:eu_debug: DRY RUN is enabled. 2020-03-02 07:11:22,747:eu_debug: IN post(). 2020-03-02 07:11:22,747:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF-FineMap_reference" ], "lab": "/labs/will-greenleaf/" } 2020-03-02 07:11:22,747:eu_debug: DRY RUN is enabled. 2020-03-02 07:11:26,553:eu_debug: Connecting to www.encodeproject.org 2020-03-02 07:11:26,554:eu_debug: DRY RUN is enabled. 2020-03-02 07:11:26,554:eu_debug: submission=False: In non-submission mode. 2020-03-02 07:11:26,798:eu_debug: submission=True: In submission mode. 2020-03-02 07:11:26,808:eu_debug: IN post(). 2020-03-02 07:11:26,809:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:11:26,809:eu_debug: DRY RUN is enabled. 2020-03-02 07:11:26,809:eu_debug: IN post(). 2020-03-02 07:11:26,810:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R2 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R2" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:11:26,810:eu_debug: DRY RUN is enabled. 2020-03-02 07:11:26,810:eu_debug: IN post(). 2020-03-02 07:11:26,811:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:11:26,811:eu_debug: DRY RUN is enabled. 2020-03-02 07:11:26,811:eu_debug: IN post(). 2020-03-02 07:11:26,812:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R2 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R2" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:11:26,812:eu_debug: DRY RUN is enabled. 2020-03-02 07:11:26,812:eu_debug: IN post(). 2020-03-02 07:11:26,813:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CTCF-FineMap_Plasmid To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CTCF-FineMap_Plasmid" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:11:26,813:eu_debug: DRY RUN is enabled. 2020-03-02 07:11:30,278:eu_debug: Connecting to www.encodeproject.org 2020-03-02 07:11:30,280:eu_debug: DRY RUN is enabled. 2020-03-02 07:11:30,280:eu_debug: submission=False: In non-submission mode. 2020-03-02 07:11:30,515:eu_debug: submission=True: In submission mode. 2020-03-02 07:11:30,524:eu_debug: IN post(). 2020-03-02 07:11:30,525:eu_debug: <<<<<< POST library record will-greenleaf:K562_CTCF-FineMap_Plasmid_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CTCF-FineMap_Plasmid_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CTCF-FineMap_Plasmid", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:11:30,525:eu_debug: DRY RUN is enabled. 2020-03-02 07:11:30,525:eu_debug: IN post(). 2020-03-02 07:11:30,525:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R1", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:11:30,526:eu_debug: DRY RUN is enabled. 2020-03-02 07:11:30,526:eu_debug: IN post(). 2020-03-02 07:11:30,526:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R2_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R2_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R2", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:11:30,527:eu_debug: DRY RUN is enabled. 2020-03-02 07:11:30,527:eu_debug: IN post(). 2020-03-02 07:11:30,527:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R1_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R1_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R1", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:11:30,527:eu_debug: DRY RUN is enabled. 2020-03-02 07:11:30,528:eu_debug: IN post(). 2020-03-02 07:11:30,528:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R2_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R2_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R2", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:11:30,528:eu_debug: DRY RUN is enabled. 2020-03-02 07:11:36,974:eu_debug: Connecting to www.encodeproject.org 2020-03-02 07:11:36,976:eu_debug: submission=False: In non-submission mode. 2020-03-02 07:11:37,216:eu_debug: submission=True: In submission mode. 2020-03-02 07:11:37,225:eu_debug: IN post(). 2020-03-02 07:11:37,226:eu_debug: <<<<<< POST reference record will-greenleaf:K562_CRISPR_CTCF-FineMap_reference To DCC with URL https://www.encodeproject.org/reference and this payload: { "aliases": [ "will-greenleaf:K562_CRISPR_CTCF-FineMap_reference" ], "award": "/awards/UM1HG009436/", "lab": "/labs/will-greenleaf/", "reference_type": "functional elements" } 2020-03-02 07:11:37,338:eu_debug: Success. 2020-03-02 07:11:40,579:eu_debug: Connecting to www.encodeproject.org 2020-03-02 07:11:40,581:eu_debug: submission=False: In non-submission mode. 2020-03-02 07:11:40,824:eu_debug: submission=True: In submission mode. 2020-03-02 07:11:40,835:eu_debug: IN post(). 2020-03-02 07:11:40,835:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CTCF-FineMap_Plasmid To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CTCF-FineMap_Plasmid" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF-FineMap_reference" ], "lab": "/labs/will-greenleaf/" } 2020-03-02 07:11:40,955:eu_debug: Success. 2020-03-02 07:11:40,956:eu_debug: IN post(). 2020-03-02 07:11:40,956:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRk_CTCF-FineMap-T6 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T6" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF-FineMap_reference" ], "lab": "/labs/will-greenleaf/" } 2020-03-02 07:11:41,072:eu_debug: Success. 2020-03-02 07:11:41,072:eu_debug: IN post(). 2020-03-02 07:11:41,073:eu_debug: <<<<<< POST functional_characterization_experiment record will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20 To DCC with URL https://www.encodeproject.org/functional_characterization_experiment and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20" ], "assay_term_name": "CRISPR screen", "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "elements_references": [ "will-greenleaf:K562_CRISPR_CTCF-FineMap_reference" ], "lab": "/labs/will-greenleaf/" } 2020-03-02 07:11:41,188:eu_debug: Success. 2020-03-02 07:11:44,602:eu_debug: Connecting to www.encodeproject.org 2020-03-02 07:11:44,603:eu_debug: submission=False: In non-submission mode. 2020-03-02 07:11:44,844:eu_debug: submission=True: In submission mode. 2020-03-02 07:11:44,854:eu_debug: IN post(). 2020-03-02 07:11:44,855:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:11:45,094:eu_debug: Success. 2020-03-02 07:11:45,094:eu_debug: IN post(). 2020-03-02 07:11:45,095:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R2 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R2" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:11:45,340:eu_debug: Success. 2020-03-02 07:11:45,340:eu_debug: IN post(). 2020-03-02 07:11:45,341:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:11:45,578:eu_debug: Success. 2020-03-02 07:11:45,578:eu_debug: IN post(). 2020-03-02 07:11:45,579:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R2 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R2" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:11:45,818:eu_debug: Success. 2020-03-02 07:11:45,818:eu_debug: IN post(). 2020-03-02 07:11:45,819:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CTCF-FineMap_Plasmid To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CTCF-FineMap_Plasmid" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:11:45,941:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'description': 'There was a conflict when trying to complete your request.', 'code': 409, 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CTCF-FineMap_Plasmid')]", 'status': 'error', 'title': 'Conflict'} 2020-03-02 07:11:45,941:eu_debug: >>>>>>GET will-greenleaf:K562_CTCF-FineMap_Plasmid From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CTCF-FineMap_Plasmid/?format=json&datastore=database 2020-03-02 07:11:46,120:eu_debug: Will not POST 'will-greenleaf:K562_CTCF-FineMap_Plasmid' since it already exists with aliases '['will-greenleaf:K562_CTCF-FineMap_Plasmid']'. 2020-03-02 07:11:56,236:eu_debug: Connecting to www.encodeproject.org 2020-03-02 07:11:56,238:eu_debug: submission=False: In non-submission mode. 2020-03-02 07:11:56,481:eu_debug: submission=True: In submission mode. 2020-03-02 07:11:56,491:eu_debug: IN post(). 2020-03-02 07:11:56,491:eu_debug: <<<<<< POST library record will-greenleaf:K562_CTCF-FineMap_Plasmid_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CTCF-FineMap_Plasmid_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CTCF-FineMap_Plasmid", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:11:56,595:eu_debug: Failed to POST will-greenleaf:K562_CTCF-FineMap_Plasmid_library 2020-03-02 07:11:56,596:eu_debug: <<<<<< DCC POST RESPONSE: 2020-03-02 07:11:56,596:eu_debug: { "@type": [ "ValidationFailure", "Error" ], "code": 422, "description": "Failed validation", "errors": [ { "description": "'will-greenleaf:K562_CTCF-FineMap_Plasmid' is not of type 'Biosample'", "location": "body", "name": [ "biosample" ] } ], "status": "error", "title": "Unprocessable Entity" } 2020-03-02 07:12:48,595:eu_debug: Connecting to www.encodeproject.org 2020-03-02 07:12:48,597:eu_debug: submission=False: In non-submission mode. 2020-03-02 07:12:49,142:eu_debug: submission=True: In submission mode. 2020-03-02 07:12:49,152:eu_debug: IN post(). 2020-03-02 07:12:49,153:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:12:49,274:eu_debug: {'description': 'There was a conflict when trying to complete your request.', 'title': 'Conflict', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R1')]", 'status': 'error', 'code': 409, '@type': ['HTTPConflict', 'Error']} 2020-03-02 07:12:49,274:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R1/?format=json&datastore=database 2020-03-02 07:12:49,700:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R1' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R1']'. 2020-03-02 07:12:49,701:eu_debug: IN post(). 2020-03-02 07:12:49,702:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R2 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R2" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:12:49,822:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'description': 'There was a conflict when trying to complete your request.', 'code': 409, 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R2')]", 'status': 'error', 'title': 'Conflict'} 2020-03-02 07:12:49,822:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R2/?format=json&datastore=database 2020-03-02 07:12:50,225:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R2' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R2']'. 2020-03-02 07:12:50,225:eu_debug: IN post(). 2020-03-02 07:12:50,226:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:12:50,355:eu_debug: {'code': 409, 'title': 'Conflict', 'status': 'error', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R1')]", 'description': 'There was a conflict when trying to complete your request.', '@type': ['HTTPConflict', 'Error']} 2020-03-02 07:12:50,355:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R1/?format=json&datastore=database 2020-03-02 07:12:50,762:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R1' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R1']'. 2020-03-02 07:12:50,763:eu_debug: IN post(). 2020-03-02 07:12:50,763:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R2 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R2" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:12:50,884:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'description': 'There was a conflict when trying to complete your request.', 'code': 409, 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R2')]", 'status': 'error', 'title': 'Conflict'} 2020-03-02 07:12:50,884:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R2/?format=json&datastore=database 2020-03-02 07:12:51,294:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R2' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R2']'. 2020-03-02 07:12:51,295:eu_debug: IN post(). 2020-03-02 07:12:51,295:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CTCF-FineMap_Plasmid-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CTCF-FineMap_Plasmid-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:12:51,530:eu_debug: Success. 2020-03-02 07:16:45,079:eu_debug: Connecting to www.encodeproject.org 2020-03-02 07:16:45,080:eu_debug: submission=False: In non-submission mode. 2020-03-02 07:16:45,349:eu_debug: submission=True: In submission mode. 2020-03-02 07:16:45,360:eu_debug: IN post(). 2020-03-02 07:16:45,361:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:16:45,481:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'code': 409, 'status': 'error', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R1')]", 'title': 'Conflict'} 2020-03-02 07:16:45,481:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R1/?format=json&datastore=database 2020-03-02 07:16:45,890:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R1' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R1']'. 2020-03-02 07:16:45,891:eu_debug: IN post(). 2020-03-02 07:16:45,891:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R2 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R2" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:16:46,009:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'code': 409, 'status': 'error', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R2')]", 'title': 'Conflict'} 2020-03-02 07:16:46,009:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R2/?format=json&datastore=database 2020-03-02 07:16:47,235:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R2' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R2']'. 2020-03-02 07:16:47,235:eu_debug: IN post(). 2020-03-02 07:16:47,236:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:16:47,356:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'code': 409, 'status': 'error', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R1')]", 'title': 'Conflict'} 2020-03-02 07:16:47,356:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R1/?format=json&datastore=database 2020-03-02 07:16:48,711:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R1' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R1']'. 2020-03-02 07:16:48,711:eu_debug: IN post(). 2020-03-02 07:16:48,712:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R2 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R2" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:16:48,827:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R2')]", 'title': 'Conflict', 'code': 409, 'status': 'error', 'description': 'There was a conflict when trying to complete your request.'} 2020-03-02 07:16:48,827:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R2/?format=json&datastore=database 2020-03-02 07:16:49,254:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R2' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R2']'. 2020-03-02 07:16:49,254:eu_debug: IN post(). 2020-03-02 07:16:49,255:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CTCF-FineMap_Plasmid-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CTCF-FineMap_Plasmid-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "lab": "/labs/will-greenleaf/", "organism": "human", "source": "/sources/michael-bassik/" } 2020-03-02 07:16:49,374:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CTCF-FineMap_Plasmid-R1')]", 'title': 'Conflict', 'code': 409, 'status': 'error', 'description': 'There was a conflict when trying to complete your request.'} 2020-03-02 07:16:49,374:eu_debug: >>>>>>GET will-greenleaf:K562_CTCF-FineMap_Plasmid-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CTCF-FineMap_Plasmid-R1/?format=json&datastore=database 2020-03-02 07:16:49,794:eu_debug: Will not POST 'will-greenleaf:K562_CTCF-FineMap_Plasmid-R1' since it already exists with aliases '['will-greenleaf:K562_CTCF-FineMap_Plasmid-R1']'. 2020-03-02 07:16:55,087:eu_debug: Connecting to www.encodeproject.org 2020-03-02 07:16:55,088:eu_debug: submission=False: In non-submission mode. 2020-03-02 07:16:55,368:eu_debug: submission=True: In submission mode. 2020-03-02 07:16:55,380:eu_debug: IN post(). 2020-03-02 07:16:55,381:eu_debug: <<<<<< POST library record will-greenleaf:K562_CTCF-FineMap_Plasmid-R1_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CTCF-FineMap_Plasmid-R1_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CTCF-FineMap_Plasmid-R1", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:16:55,490:eu_debug: Success. 2020-03-02 07:16:55,490:eu_debug: IN post(). 2020-03-02 07:16:55,491:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R1", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:16:55,608:eu_debug: Success. 2020-03-02 07:16:55,608:eu_debug: IN post(). 2020-03-02 07:16:55,609:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R2_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R2_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R2", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:16:55,727:eu_debug: Success. 2020-03-02 07:16:55,728:eu_debug: IN post(). 2020-03-02 07:16:55,729:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R1_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R1_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R1", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:16:55,883:eu_debug: Success. 2020-03-02 07:16:55,884:eu_debug: IN post(). 2020-03-02 07:16:55,884:eu_debug: <<<<<< POST library record will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R2_library To DCC with URL https://www.encodeproject.org/library and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R2_library" ], "award": "/awards/UM1HG009436/", "biosample": "will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R2", "lab": "/labs/will-greenleaf/", "nucleic_acid_term_name": "DNA" } 2020-03-02 07:16:55,997:eu_debug: Success. 2020-03-02 07:17:00,116:eu_debug: Connecting to www.encodeproject.org 2020-03-02 07:17:00,118:eu_debug: submission=False: In non-submission mode. 2020-03-02 07:17:00,391:eu_debug: submission=True: In submission mode. 2020-03-02 07:17:00,428:eu_debug: IN post(). 2020-03-02 07:17:00,429:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CTCF-FineMap_Plasmid-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CTCF-FineMap_Plasmid-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CTCF-FineMap_Plasmid", "library": "will-greenleaf:K562_CTCF-FineMap_Plasmid-R1_library", "technical_replicate_number": 1 } 2020-03-02 07:17:00,535:eu_debug: Success. 2020-03-02 07:17:00,535:eu_debug: IN post(). 2020-03-02 07:17:00,536:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T6", "library": "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R1_library", "technical_replicate_number": 1 } 2020-03-02 07:17:00,643:eu_debug: Success. 2020-03-02 07:17:00,643:eu_debug: IN post(). 2020-03-02 07:17:00,644:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R2_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R2_T1" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T6", "library": "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R2_library", "technical_replicate_number": 1 } 2020-03-02 07:17:00,750:eu_debug: Success. 2020-03-02 07:17:00,751:eu_debug: IN post(). 2020-03-02 07:17:00,751:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20", "library": "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_library", "technical_replicate_number": 1 } 2020-03-02 07:17:00,861:eu_debug: Success. 2020-03-02 07:17:00,862:eu_debug: IN post(). 2020-03-02 07:17:00,862:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R2_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R2_T1" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20", "library": "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R2_library", "technical_replicate_number": 1 } 2020-03-02 07:17:00,973:eu_debug: Success. 2020-03-02 07:17:04,932:eu_debug: Connecting to www.encodeproject.org 2020-03-02 07:17:04,934:eu_debug: submission=False: In non-submission mode. 2020-03-02 07:17:05,172:eu_debug: submission=True: In submission mode. 2020-03-02 07:17:05,183:eu_debug: IN post(). 2020-03-02 07:17:40,415:eu_debug: <<<<<< POST file record will-greenleaf:K562_CTCF-FineMap_Plasmid_R1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CTCF-FineMap_Plasmid_R1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CTCF-FineMap_Plasmid", "file_format": "fastq", "file_size": 2498304387, "lab": "/labs/will-greenleaf/", "md5sum": "f4b0cf85df36bd6904266b5e429a90d3", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CTCF-FineMap_Plasmid_R1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF_FineMap_Plasmid.fastq.gz" } 2020-03-02 07:17:40,545:eu_debug: Failed to POST will-greenleaf:K562_CTCF-FineMap_Plasmid_R1.fastq.gz 2020-03-02 07:17:40,545:eu_debug: <<<<<< DCC POST RESPONSE: 2020-03-02 07:17:40,546:eu_debug: { "@type": [ "ValidationFailure", "Error" ], "code": 422, "description": "Failed validation", "errors": [ { "description": "'will-greenleaf:K562_CTCF-FineMap_Plasmid_R1' not found", "location": "body", "name": [ "replicate" ] } ], "status": "error", "title": "Unprocessable Entity" } 2020-03-02 07:20:56,688:eu_debug: Connecting to www.encodeproject.org 2020-03-02 07:20:56,689:eu_debug: submission=False: In non-submission mode. 2020-03-02 07:20:56,944:eu_debug: submission=True: In submission mode. 2020-03-02 07:20:56,956:eu_debug: IN post(). 2020-03-02 07:21:01,256:eu_debug: <<<<<< POST file record will-greenleaf:K562_CTCF-FineMap_Plasmid_R1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CTCF-FineMap_Plasmid_R1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CTCF-FineMap_Plasmid", "file_format": "fastq", "file_size": 2498304387, "lab": "/labs/will-greenleaf/", "md5sum": "f4b0cf85df36bd6904266b5e429a90d3", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CTCF-FineMap_Plasmid_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF_FineMap_Plasmid.fastq.gz" } 2020-03-02 07:21:01,372:eu_debug: Failed to POST will-greenleaf:K562_CTCF-FineMap_Plasmid_R1.fastq.gz 2020-03-02 07:21:01,372:eu_debug: <<<<<< DCC POST RESPONSE: 2020-03-02 07:21:01,372:eu_debug: { "@type": [ "ValidationFailure", "Error" ], "code": 422, "description": "Failed validation", "errors": [ { "description": "'will-greenleaf:K562_CTCF-FineMap_Plasmid_T1' not found", "location": "body", "name": [ "replicate" ] } ], "status": "error", "title": "Unprocessable Entity" } 2020-03-02 07:21:42,200:eu_debug: Connecting to www.encodeproject.org 2020-03-02 07:21:42,201:eu_debug: submission=False: In non-submission mode. 2020-03-02 07:21:42,505:eu_debug: submission=True: In submission mode. 2020-03-02 07:21:42,513:eu_debug: IN post(). 2020-03-02 07:21:46,822:eu_debug: <<<<<< POST file record will-greenleaf:K562_CTCF-FineMap_Plasmid_R1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CTCF-FineMap_Plasmid_R1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CTCF-FineMap_Plasmid", "file_format": "fastq", "file_size": 2498304387, "lab": "/labs/will-greenleaf/", "md5sum": "f4b0cf85df36bd6904266b5e429a90d3", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CTCF-FineMap_Plasmid_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF_FineMap_Plasmid.fastq.gz" } 2020-03-02 07:21:46,945:eu_debug: Failed to POST will-greenleaf:K562_CTCF-FineMap_Plasmid_R1.fastq.gz 2020-03-02 07:21:46,945:eu_debug: <<<<<< DCC POST RESPONSE: 2020-03-02 07:21:46,946:eu_debug: { "@type": [ "ValidationFailure", "Error" ], "code": 422, "description": "Failed validation", "errors": [ { "description": "'will-greenleaf:K562_CTCF-FineMap_Plasmid_T1' not found", "location": "body", "name": [ "replicate" ] } ], "status": "error", "title": "Unprocessable Entity" } 2020-03-02 07:22:05,287:eu_debug: Connecting to www.encodeproject.org 2020-03-02 07:22:05,289:eu_debug: submission=False: In non-submission mode. 2020-03-02 07:22:05,540:eu_debug: submission=True: In submission mode. 2020-03-02 07:22:05,550:eu_debug: IN post(). 2020-03-02 07:22:05,551:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CTCF-FineMap_Plasmid-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CTCF-FineMap_Plasmid-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CTCF-FineMap_Plasmid", "library": "will-greenleaf:K562_CTCF-FineMap_Plasmid-R1_library", "technical_replicate_number": 1 } 2020-03-02 07:22:05,658:eu_debug: {'description': 'There was a conflict when trying to complete your request.', 'title': 'Conflict', 'detail': "Keys conflict: [('replicate:experiment_biological_technical', 'eff4688f-4bd6-4f30-9119-9f575d547a9d/1/1'), ('alias', 'will-greenleaf:K562_CTCF-FineMap_Plasmid-R1_T1')]", 'status': 'error', 'code': 409, '@type': ['HTTPConflict', 'Error']} 2020-03-02 07:22:05,658:eu_debug: >>>>>>GET will-greenleaf:K562_CTCF-FineMap_Plasmid-R1_T1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CTCF-FineMap_Plasmid-R1_T1/?format=json&datastore=database 2020-03-02 07:22:06,069:eu_debug: Will not POST 'will-greenleaf:K562_CTCF-FineMap_Plasmid-R1_T1' since it already exists with aliases '['will-greenleaf:K562_CTCF-FineMap_Plasmid-R1_T1']'. 2020-03-02 07:22:06,069:eu_debug: IN post(). 2020-03-02 07:22:06,070:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T6", "library": "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R1_library", "technical_replicate_number": 1 } 2020-03-02 07:22:06,188:eu_debug: {'code': 409, 'status': 'error', 'detail': "Keys conflict: [('replicate:experiment_biological_technical', 'bb793166-baa2-4272-9e7b-14ab3681448d/1/1'), ('alias', 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R1_T1')]", 'description': 'There was a conflict when trying to complete your request.', '@type': ['HTTPConflict', 'Error'], 'title': 'Conflict'} 2020-03-02 07:22:06,188:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R1_T1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R1_T1/?format=json&datastore=database 2020-03-02 07:22:06,626:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R1_T1' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R1_T1']'. 2020-03-02 07:22:06,627:eu_debug: IN post(). 2020-03-02 07:22:06,627:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R2_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R2_T1" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T6", "library": "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R2_library", "technical_replicate_number": 1 } 2020-03-02 07:22:06,736:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'code': 409, 'status': 'error', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('replicate:experiment_biological_technical', 'bb793166-baa2-4272-9e7b-14ab3681448d/2/1'), ('alias', 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R2_T1')]", 'title': 'Conflict'} 2020-03-02 07:22:06,737:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R2_T1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R2_T1/?format=json&datastore=database 2020-03-02 07:22:07,166:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R2_T1' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R2_T1']'. 2020-03-02 07:22:07,166:eu_debug: IN post(). 2020-03-02 07:22:07,167:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20", "library": "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_library", "technical_replicate_number": 1 } 2020-03-02 07:22:07,273:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'code': 409, 'status': 'error', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('replicate:experiment_biological_technical', '6e1cf7ae-e5af-47ed-aab0-0bb4a1f6a969/1/1'), ('alias', 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T1')]", 'title': 'Conflict'} 2020-03-02 07:22:07,274:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T1/?format=json&datastore=database 2020-03-02 07:22:07,702:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T1' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T1']'. 2020-03-02 07:22:07,702:eu_debug: IN post(). 2020-03-02 07:22:07,703:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R2_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R2_T1" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20", "library": "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R2_library", "technical_replicate_number": 1 } 2020-03-02 07:22:07,805:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'code': 409, 'status': 'error', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('replicate:experiment_biological_technical', '6e1cf7ae-e5af-47ed-aab0-0bb4a1f6a969/2/1'), ('alias', 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R2_T1')]", 'title': 'Conflict'} 2020-03-02 07:22:07,806:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R2_T1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R2_T1/?format=json&datastore=database 2020-03-02 07:22:08,237:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R2_T1' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R2_T1']'. 2020-03-02 07:22:14,208:eu_debug: Connecting to www.encodeproject.org 2020-03-02 07:22:14,209:eu_debug: submission=False: In non-submission mode. 2020-03-02 07:22:14,454:eu_debug: submission=True: In submission mode. 2020-03-02 07:22:14,463:eu_debug: IN post(). 2020-03-02 07:22:14,464:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CTCF-FineMap_Plasmid-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CTCF-FineMap_Plasmid-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CTCF-FineMap_Plasmid", "library": "will-greenleaf:K562_CTCF-FineMap_Plasmid-R1_library", "technical_replicate_number": 1 } 2020-03-02 07:22:14,573:eu_debug: {'code': 409, 'status': 'error', 'detail': "Keys conflict: [('replicate:experiment_biological_technical', 'eff4688f-4bd6-4f30-9119-9f575d547a9d/1/1'), ('alias', 'will-greenleaf:K562_CTCF-FineMap_Plasmid-R1_T1')]", 'description': 'There was a conflict when trying to complete your request.', '@type': ['HTTPConflict', 'Error'], 'title': 'Conflict'} 2020-03-02 07:22:14,574:eu_debug: >>>>>>GET will-greenleaf:K562_CTCF-FineMap_Plasmid-R1_T1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CTCF-FineMap_Plasmid-R1_T1/?format=json&datastore=database 2020-03-02 07:22:15,278:eu_debug: Will not POST 'will-greenleaf:K562_CTCF-FineMap_Plasmid-R1_T1' since it already exists with aliases '['will-greenleaf:K562_CTCF-FineMap_Plasmid-R1_T1']'. 2020-03-02 07:22:15,278:eu_debug: IN post(). 2020-03-02 07:22:15,279:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T6", "library": "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R1_library", "technical_replicate_number": 1 } 2020-03-02 07:22:15,386:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'detail': "Keys conflict: [('replicate:experiment_biological_technical', 'bb793166-baa2-4272-9e7b-14ab3681448d/1/1'), ('alias', 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R1_T1')]", 'title': 'Conflict', 'code': 409, 'status': 'error', 'description': 'There was a conflict when trying to complete your request.'} 2020-03-02 07:22:15,386:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R1_T1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R1_T1/?format=json&datastore=database 2020-03-02 07:22:15,836:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R1_T1' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R1_T1']'. 2020-03-02 07:22:15,836:eu_debug: IN post(). 2020-03-02 07:22:15,836:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R2_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R2_T1" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T6", "library": "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R2_library", "technical_replicate_number": 1 } 2020-03-02 07:22:15,947:eu_debug: {'detail': "Keys conflict: [('replicate:experiment_biological_technical', 'bb793166-baa2-4272-9e7b-14ab3681448d/2/1'), ('alias', 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R2_T1')]", 'status': 'error', '@type': ['HTTPConflict', 'Error'], 'description': 'There was a conflict when trying to complete your request.', 'code': 409, 'title': 'Conflict'} 2020-03-02 07:22:15,947:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R2_T1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R2_T1/?format=json&datastore=database 2020-03-02 07:22:16,379:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R2_T1' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R2_T1']'. 2020-03-02 07:22:16,379:eu_debug: IN post(). 2020-03-02 07:22:16,379:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T1" ], "biological_replicate_number": 1, "experiment": "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20", "library": "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_library", "technical_replicate_number": 1 } 2020-03-02 07:22:16,482:eu_debug: {'code': 409, 'status': 'error', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T1'), ('replicate:experiment_biological_technical', '6e1cf7ae-e5af-47ed-aab0-0bb4a1f6a969/1/1')]", 'description': 'There was a conflict when trying to complete your request.', '@type': ['HTTPConflict', 'Error'], 'title': 'Conflict'} 2020-03-02 07:22:16,482:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T1/?format=json&datastore=database 2020-03-02 07:22:17,728:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T1' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T1']'. 2020-03-02 07:22:17,728:eu_debug: IN post(). 2020-03-02 07:22:17,729:eu_debug: <<<<<< POST replicate record will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R2_T1 To DCC with URL https://www.encodeproject.org/replicate and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R2_T1" ], "biological_replicate_number": 2, "experiment": "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20", "library": "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R2_library", "technical_replicate_number": 1 } 2020-03-02 07:22:17,835:eu_debug: {'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R2_T1'), ('replicate:experiment_biological_technical', '6e1cf7ae-e5af-47ed-aab0-0bb4a1f6a969/2/1')]", 'status': 'error', '@type': ['HTTPConflict', 'Error'], 'description': 'There was a conflict when trying to complete your request.', 'code': 409, 'title': 'Conflict'} 2020-03-02 07:22:17,835:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R2_T1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R2_T1/?format=json&datastore=database 2020-03-02 07:22:18,316:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R2_T1' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R2_T1']'. 2020-03-02 07:22:59,849:eu_debug: Connecting to www.encodeproject.org 2020-03-02 07:22:59,850:eu_debug: submission=False: In non-submission mode. 2020-03-02 07:23:00,089:eu_debug: submission=True: In submission mode. 2020-03-02 07:23:00,101:eu_debug: IN post(). 2020-03-02 07:23:04,359:eu_debug: <<<<<< POST file record will-greenleaf:K562_CTCF-FineMap_Plasmid_R1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CTCF-FineMap_Plasmid_R1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CTCF-FineMap_Plasmid", "file_format": "fastq", "file_size": 2498304387, "lab": "/labs/will-greenleaf/", "md5sum": "f4b0cf85df36bd6904266b5e429a90d3", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CTCF-FineMap_Plasmid-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF_FineMap_Plasmid.fastq.gz" } 2020-03-02 07:23:04,881:eu_debug: Success. 2020-03-02 07:23:05,028:eu_debug: IN upload_file() 2020-03-02 07:23:05,028:eu_debug: Attempting to generate new file upload credentials 2020-03-02 07:23:05,518:eu_debug: Success: upload credentials for 'ENCFF048HME' regenerated. 2020-03-02 07:23:05,518:eu_debug: >>>>>>GET ENCFF048HME From DCC with URL https://www.encodeproject.org/ENCFF048HME/?format=json&datastore=database 2020-03-02 07:23:05,972:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF_FineMap_Plasmid.fastq.gz s3://encode-files/2020/03/02/458f2e56-a8fc-42df-b03e-6db50e0d0696/ENCFF048HME.fastq.gz'. 2020-03-02 07:24:01,456:eu_debug: AWS upload successful. 2020-03-02 07:24:01,458:eu_debug: IN post(). 2020-03-02 07:24:33,990:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R1_T1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R1_T1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T6", "file_format": "fastq", "file_size": 2017893927, "lab": "/labs/will-greenleaf/", "md5sum": "19705fc3a90598cdfc2f58ede4f0a418", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF_FineMap_T6_BR1.fastq.gz" } 2020-03-02 07:24:34,486:eu_debug: Success. 2020-03-02 07:24:34,487:eu_debug: IN upload_file() 2020-03-02 07:24:34,487:eu_debug: Attempting to generate new file upload credentials 2020-03-02 07:24:34,991:eu_debug: Success: upload credentials for 'ENCFF783HWA' regenerated. 2020-03-02 07:24:34,991:eu_debug: >>>>>>GET ENCFF783HWA From DCC with URL https://www.encodeproject.org/ENCFF783HWA/?format=json&datastore=database 2020-03-02 07:24:35,480:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF_FineMap_T6_BR1.fastq.gz s3://encode-files/2020/03/02/fb33ba33-fdab-4bfa-b2a8-baaa41299e61/ENCFF783HWA.fastq.gz'. 2020-03-02 07:25:05,807:eu_debug: AWS upload successful. 2020-03-02 07:25:05,810:eu_debug: IN post(). 2020-03-02 07:25:41,395:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R1_T2.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R1_T2.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T6", "file_format": "fastq", "file_size": 2212290456, "lab": "/labs/will-greenleaf/", "md5sum": "00cc87bd81ec5866daeb6c181a6307d0", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T6-R2_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF_FineMap_T6_BR2.fastq.gz" } 2020-03-02 07:25:41,898:eu_debug: Success. 2020-03-02 07:25:41,899:eu_debug: IN upload_file() 2020-03-02 07:25:41,900:eu_debug: Attempting to generate new file upload credentials 2020-03-02 07:25:42,404:eu_debug: Success: upload credentials for 'ENCFF786IAH' regenerated. 2020-03-02 07:25:42,404:eu_debug: >>>>>>GET ENCFF786IAH From DCC with URL https://www.encodeproject.org/ENCFF786IAH/?format=json&datastore=database 2020-03-02 07:25:42,897:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF_FineMap_T6_BR2.fastq.gz s3://encode-files/2020/03/02/1c75b599-a4ea-4b6e-8b4e-87fb33c9b971/ENCFF786IAH.fastq.gz'. 2020-03-02 07:26:19,051:eu_debug: AWS upload successful. 2020-03-02 07:26:19,055:eu_debug: IN post(). 2020-03-02 07:26:44,974:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20", "file_format": "fastq", "file_size": 1868891552, "lab": "/labs/will-greenleaf/", "md5sum": "9edcbe4ff83f2d604ae476a7b039498a", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF_FineMap_T20_BR1.fastq.gz" } 2020-03-02 07:26:45,466:eu_debug: Success. 2020-03-02 07:26:45,467:eu_debug: IN upload_file() 2020-03-02 07:26:45,468:eu_debug: Attempting to generate new file upload credentials 2020-03-02 07:26:45,969:eu_debug: Success: upload credentials for 'ENCFF041LGI' regenerated. 2020-03-02 07:26:45,969:eu_debug: >>>>>>GET ENCFF041LGI From DCC with URL https://www.encodeproject.org/ENCFF041LGI/?format=json&datastore=database 2020-03-02 07:26:46,485:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF_FineMap_T20_BR1.fastq.gz s3://encode-files/2020/03/02/1951c7e3-e8b7-426c-a77d-b9863c86da3f/ENCFF041LGI.fastq.gz'. 2020-03-02 07:27:15,605:eu_debug: AWS upload successful. 2020-03-02 07:27:15,607:eu_debug: IN post(). 2020-03-02 07:27:47,213:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T2.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T2.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20", "file_format": "fastq", "file_size": 2241016090, "lab": "/labs/will-greenleaf/", "md5sum": "7cfe35dddef53f5bcec3168ece066f21", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R2_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF_FineMap_T20_BR2.fastq.gz" } 2020-03-02 07:27:47,694:eu_debug: Success. 2020-03-02 07:27:47,695:eu_debug: IN upload_file() 2020-03-02 07:27:47,695:eu_debug: Attempting to generate new file upload credentials 2020-03-02 07:27:48,199:eu_debug: Success: upload credentials for 'ENCFF175MWK' regenerated. 2020-03-02 07:27:48,199:eu_debug: >>>>>>GET ENCFF175MWK From DCC with URL https://www.encodeproject.org/ENCFF175MWK/?format=json&datastore=database 2020-03-02 07:27:48,693:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF_FineMap_T20_BR2.fastq.gz s3://encode-files/2020/03/02/70625d72-086f-49a3-9499-6e5119aeddbe/ENCFF175MWK.fastq.gz'. 2020-03-02 07:28:21,482:eu_debug: AWS upload successful. 2020-05-05 12:08:37,963:eu_debug: Connecting to www.encodeproject.org 2020-05-05 12:08:37,980:eu_debug: submission=False: In non-submission mode. 2020-05-05 12:08:38,531:eu_debug: submission=True: In submission mode. 2020-05-05 12:08:38,544:eu_debug: IN post(). 2020-05-05 12:08:40,850:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 149766493, "lab": "/labs/will-greenleaf/", "md5sum": "0f970ce2a05775d757602402acc7127d", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T0-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1435.fastq.gz" } 2020-05-05 12:08:41,391:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:0f970ce2a05775d757602402acc7127d')]"} 2020-05-05 12:08:41,393:eu_debug: >>>>>>GET will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz/?format=json&datastore=database 2020-05-05 12:08:41,488:eu_debug: NOT FOUND 2020-05-05 12:10:52,351:eu_debug: Connecting to www.encodeproject.org 2020-05-05 12:10:52,353:eu_debug: submission=False: In non-submission mode. 2020-05-05 12:11:20,967:eu_debug: Connecting to www.encodeproject.org 2020-05-05 12:11:20,969:eu_debug: submission=False: In non-submission mode. 2020-05-05 12:15:57,474:eu_debug: Connecting to www.encodeproject.org 2020-05-05 12:15:57,475:eu_debug: submission=False: In non-submission mode. 2020-05-05 12:16:00,635:eu_debug: submission=True: In submission mode. 2020-05-05 12:16:00,643:eu_debug: IN post(). 2020-05-05 12:16:00,945:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 149766493, "lab": "/labs/will-greenleaf/", "md5sum": "0f970ce2a05775d757602402acc7127d", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T0-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1435.fastq.gz" } 2020-05-05 12:16:01,448:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:0f970ce2a05775d757602402acc7127d')]"} 2020-05-05 12:16:01,448:eu_debug: >>>>>>GET will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz/?format=json&datastore=database 2020-05-05 12:16:01,548:eu_debug: NOT FOUND 2020-05-05 12:18:38,492:eu_debug: Connecting to www.encodeproject.org 2020-05-05 12:18:38,493:eu_debug: submission=False: In non-submission mode. 2020-05-05 12:18:41,587:eu_debug: submission=True: In submission mode. 2020-05-05 12:18:41,595:eu_debug: IN post(). 2020-05-05 12:18:41,894:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 149766493, "lab": "/labs/will-greenleaf/", "md5sum": "0f970ce2a05775d757602402acc7127d", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T0-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1435.fastq.gz" } 2020-05-05 12:18:42,435:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:0f970ce2a05775d757602402acc7127d')]"} 2020-05-05 12:18:42,435:eu_debug: >>>>>>GET will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz/?format=json&datastore=database 2020-05-05 12:18:42,536:eu_debug: NOT FOUND 2020-05-05 12:20:21,960:eu_debug: Connecting to www.encodeproject.org 2020-05-05 12:20:21,961:eu_debug: submission=False: In non-submission mode. 2020-05-05 12:20:24,957:eu_debug: submission=True: In submission mode. 2020-05-05 12:20:24,963:eu_debug: IN post(). 2020-05-05 12:20:25,272:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 149766493, "lab": "/labs/will-greenleaf/", "md5sum": "0f970ce2a05775d757602402acc7127d", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T0-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1435.fastq.gz" } 2020-05-05 12:20:25,938:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz'), ('alias', 'md5:0f970ce2a05775d757602402acc7127d')]"} 2020-05-05 12:20:25,938:eu_debug: >>>>>>GET will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz/?format=json&datastore=database 2020-05-05 12:20:26,810:eu_debug: Will not POST 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz' since it already exists with aliases '['will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz']'. 2020-05-05 12:20:26,810:eu_debug: IN post(). 2020-05-05 12:20:29,114:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 141156037, "lab": "/labs/will-greenleaf/", "md5sum": "893e12bafdbd69dd96066024a90f6bb3", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T0-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1761.fastq.gz" } 2020-05-05 12:20:29,675:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:893e12bafdbd69dd96066024a90f6bb3')]"} 2020-05-05 12:20:29,675:eu_debug: >>>>>>GET will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz/?format=json&datastore=database 2020-05-05 12:20:29,768:eu_debug: NOT FOUND 2020-05-05 12:20:57,165:eu_debug: Connecting to www.encodeproject.org 2020-05-05 12:20:57,166:eu_debug: submission=False: In non-submission mode. 2020-05-05 12:20:59,957:eu_debug: submission=True: In submission mode. 2020-05-05 12:20:59,968:eu_debug: IN post(). 2020-05-05 12:21:00,265:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 149766493, "lab": "/labs/will-greenleaf/", "md5sum": "0f970ce2a05775d757602402acc7127d", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T0-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1435.fastq.gz" } 2020-05-05 12:21:00,794:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz'), ('alias', 'md5:0f970ce2a05775d757602402acc7127d')]"} 2020-05-05 12:21:00,794:eu_debug: >>>>>>GET will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz/?format=json&datastore=database 2020-05-05 12:21:01,586:eu_debug: Will not POST 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz' since it already exists with aliases '['will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz']'. 2020-05-05 12:21:01,586:eu_debug: IN post(). 2020-05-05 12:21:01,867:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 141156037, "lab": "/labs/will-greenleaf/", "md5sum": "893e12bafdbd69dd96066024a90f6bb3", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T0-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1761.fastq.gz" } 2020-05-05 12:21:02,345:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:893e12bafdbd69dd96066024a90f6bb3'), ('alias', 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz')]"} 2020-05-05 12:21:02,345:eu_debug: >>>>>>GET will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz/?format=json&datastore=database 2020-05-05 12:21:02,993:eu_debug: Will not POST 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz' since it already exists with aliases '['will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz']'. 2020-05-05 12:21:02,994:eu_debug: IN post(). 2020-05-05 12:21:03,020:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 15376, "lab": "/labs/will-greenleaf/", "md5sum": "5177729b51ad0af8b1356c38d75f691b", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T0-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1763.fastq.gz" } 2020-05-05 12:21:03,527:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:5177729b51ad0af8b1356c38d75f691b')]"} 2020-05-05 12:21:03,527:eu_debug: >>>>>>GET will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R1.fastq.gz From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R1.fastq.gz/?format=json&datastore=database 2020-05-05 12:21:03,622:eu_debug: NOT FOUND 2020-05-05 12:21:24,018:eu_debug: Connecting to www.encodeproject.org 2020-05-05 12:21:24,019:eu_debug: submission=False: In non-submission mode. 2020-05-05 12:21:27,212:eu_debug: submission=True: In submission mode. 2020-05-05 12:21:27,223:eu_debug: IN post(). 2020-05-05 12:21:27,531:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 149766493, "lab": "/labs/will-greenleaf/", "md5sum": "0f970ce2a05775d757602402acc7127d", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T0-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1435.fastq.gz" } 2020-05-05 12:21:28,025:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz'), ('alias', 'md5:0f970ce2a05775d757602402acc7127d')]"} 2020-05-05 12:21:28,025:eu_debug: >>>>>>GET will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz/?format=json&datastore=database 2020-05-05 12:21:28,628:eu_debug: Will not POST 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz' since it already exists with aliases '['will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz']'. 2020-05-05 12:21:28,628:eu_debug: IN post(). 2020-05-05 12:21:28,902:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 141156037, "lab": "/labs/will-greenleaf/", "md5sum": "893e12bafdbd69dd96066024a90f6bb3", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T0-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1761.fastq.gz" } 2020-05-05 12:21:29,410:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:893e12bafdbd69dd96066024a90f6bb3'), ('alias', 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz')]"} 2020-05-05 12:21:29,410:eu_debug: >>>>>>GET will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz/?format=json&datastore=database 2020-05-05 12:21:30,301:eu_debug: Will not POST 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz' since it already exists with aliases '['will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz']'. 2020-05-05 12:21:30,301:eu_debug: IN post(). 2020-05-05 12:21:30,304:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 15376, "lab": "/labs/will-greenleaf/", "md5sum": "5177729b51ad0af8b1356c38d75f691b", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T0-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1763.fastq.gz" } 2020-05-05 12:21:30,871:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R1.fastq.gz'), ('alias', 'md5:5177729b51ad0af8b1356c38d75f691b')]"} 2020-05-05 12:21:30,872:eu_debug: >>>>>>GET will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R1.fastq.gz From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R1.fastq.gz/?format=json&datastore=database 2020-05-05 12:21:31,549:eu_debug: Will not POST 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R1.fastq.gz' since it already exists with aliases '['will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R1.fastq.gz']'. 2020-05-05 12:21:31,549:eu_debug: IN post(). 2020-05-05 12:21:33,627:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0_R1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0_R1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 137025878, "lab": "/labs/will-greenleaf/", "md5sum": "e5e28bbc5aad57a6cc3197f29610b44a", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T0-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1437.fastq.gz" } 2020-05-05 12:21:34,131:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:e5e28bbc5aad57a6cc3197f29610b44a')]"} 2020-05-05 12:21:34,131:eu_debug: >>>>>>GET will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0_R1.fastq.gz From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0_R1.fastq.gz/?format=json&datastore=database 2020-05-05 12:21:34,227:eu_debug: NOT FOUND 2020-05-05 12:21:51,390:eu_debug: Connecting to www.encodeproject.org 2020-05-05 12:21:51,391:eu_debug: submission=False: In non-submission mode. 2020-05-05 12:21:54,339:eu_debug: submission=True: In submission mode. 2020-05-05 12:21:54,349:eu_debug: IN post(). 2020-05-05 12:21:54,698:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 149766493, "lab": "/labs/will-greenleaf/", "md5sum": "0f970ce2a05775d757602402acc7127d", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T0-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1435.fastq.gz" } 2020-05-05 12:21:55,217:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz'), ('alias', 'md5:0f970ce2a05775d757602402acc7127d')]"} 2020-05-05 12:21:55,217:eu_debug: >>>>>>GET will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz/?format=json&datastore=database 2020-05-05 12:21:55,839:eu_debug: Will not POST 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz' since it already exists with aliases '['will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz']'. 2020-05-05 12:21:55,839:eu_debug: IN post(). 2020-05-05 12:21:56,115:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 141156037, "lab": "/labs/will-greenleaf/", "md5sum": "893e12bafdbd69dd96066024a90f6bb3", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T0-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1761.fastq.gz" } 2020-05-05 12:21:56,616:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:893e12bafdbd69dd96066024a90f6bb3'), ('alias', 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz')]"} 2020-05-05 12:21:56,665:eu_debug: >>>>>>GET will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz/?format=json&datastore=database 2020-05-05 12:21:57,297:eu_debug: Will not POST 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz' since it already exists with aliases '['will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz']'. 2020-05-05 12:21:57,298:eu_debug: IN post(). 2020-05-05 12:21:57,301:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 15376, "lab": "/labs/will-greenleaf/", "md5sum": "5177729b51ad0af8b1356c38d75f691b", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T0-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1763.fastq.gz" } 2020-05-05 12:21:57,838:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:5177729b51ad0af8b1356c38d75f691b'), ('alias', 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R1.fastq.gz')]"} 2020-05-05 12:21:57,838:eu_debug: >>>>>>GET will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R1.fastq.gz From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R1.fastq.gz/?format=json&datastore=database 2020-05-05 12:21:58,638:eu_debug: Will not POST 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R1.fastq.gz' since it already exists with aliases '['will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R1.fastq.gz']'. 2020-05-05 12:21:58,639:eu_debug: IN post(). 2020-05-05 12:21:58,910:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0_R1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0_R1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 137025878, "lab": "/labs/will-greenleaf/", "md5sum": "e5e28bbc5aad57a6cc3197f29610b44a", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T0-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1437.fastq.gz" } 2020-05-05 12:21:59,413:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:e5e28bbc5aad57a6cc3197f29610b44a'), ('alias', 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0_R1.fastq.gz')]"} 2020-05-05 12:21:59,414:eu_debug: >>>>>>GET will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0_R1.fastq.gz From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0_R1.fastq.gz/?format=json&datastore=database 2020-05-05 12:22:00,187:eu_debug: Will not POST 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0_R1.fastq.gz' since it already exists with aliases '['will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0_R1.fastq.gz']'. 2020-05-05 12:22:00,189:eu_debug: IN post(). 2020-05-05 12:22:02,246:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R2.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R2.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 135328609, "lab": "/labs/will-greenleaf/", "md5sum": "ea6bbfa2448c36d49317dfb30c1e7cba", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T0-R2_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1436.fastq.gz" } 2020-05-05 12:22:02,771:eu_debug: Success. 2020-05-05 12:22:02,772:eu_debug: IN upload_file() 2020-05-05 12:22:02,772:eu_debug: Attempting to generate new file upload credentials 2020-05-05 12:22:03,269:eu_debug: Success: upload credentials for 'ENCFF193GDJ' regenerated. 2020-05-05 12:22:03,269:eu_debug: >>>>>>GET ENCFF193GDJ From DCC with URL https://www.encodeproject.org/ENCFF193GDJ/?format=json&datastore=database 2020-05-05 12:22:04,088:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF.growth_screen.1436.fastq.gz s3://encode-files/2020/05/05/0e35a6b2-83b8-4d56-b956-3d146acd6daa/ENCFF193GDJ.fastq.gz'. 2020-05-05 12:22:13,060:eu_debug: AWS upload successful. 2020-05-05 12:22:13,063:eu_debug: IN post(). 2020-05-05 12:22:13,078:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R2.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R2.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 17111, "lab": "/labs/will-greenleaf/", "md5sum": "fe24c7bdf0c8cd5b7ccde2b3bad41f3a", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T0-R2_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1762.fastq.gz" } 2020-05-05 12:22:13,612:eu_debug: Success. 2020-05-05 12:22:13,614:eu_debug: IN upload_file() 2020-05-05 12:22:13,614:eu_debug: Attempting to generate new file upload credentials 2020-05-05 12:22:14,127:eu_debug: Success: upload credentials for 'ENCFF282BSL' regenerated. 2020-05-05 12:22:14,128:eu_debug: >>>>>>GET ENCFF282BSL From DCC with URL https://www.encodeproject.org/ENCFF282BSL/?format=json&datastore=database 2020-05-05 12:22:14,756:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF.growth_screen.1762.fastq.gz s3://encode-files/2020/05/05/38f655c7-087e-452c-befe-3b1321afe90e/ENCFF282BSL.fastq.gz'. 2020-05-05 12:22:16,737:eu_debug: AWS upload successful. 2020-05-05 12:22:16,739:eu_debug: IN post(). 2020-05-05 12:22:19,386:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R2.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R2.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 171787825, "lab": "/labs/will-greenleaf/", "md5sum": "2c03857e62f6c27742678691bc99d4f8", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T0-R2_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1764.fastq.gz" } 2020-05-05 12:22:19,925:eu_debug: Success. 2020-05-05 12:22:19,926:eu_debug: IN upload_file() 2020-05-05 12:22:19,927:eu_debug: Attempting to generate new file upload credentials 2020-05-05 12:22:20,478:eu_debug: Success: upload credentials for 'ENCFF027JBX' regenerated. 2020-05-05 12:22:20,479:eu_debug: >>>>>>GET ENCFF027JBX From DCC with URL https://www.encodeproject.org/ENCFF027JBX/?format=json&datastore=database 2020-05-05 12:22:21,158:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF.growth_screen.1764.fastq.gz s3://encode-files/2020/05/05/d2db0f14-4962-40b1-8832-d5bc846c42bd/ENCFF027JBX.fastq.gz'. 2020-05-05 12:22:30,174:eu_debug: AWS upload successful. 2020-05-05 12:22:30,176:eu_debug: IN post(). 2020-05-05 12:22:32,222:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0_R2.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0_R2.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T0", "file_format": "fastq", "file_size": 121260141, "lab": "/labs/will-greenleaf/", "md5sum": "1ef398c632df68ba289828678fe91d2e", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T0-R2_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1438.fastq.gz" } 2020-05-05 12:22:32,750:eu_debug: Success. 2020-05-05 12:22:32,752:eu_debug: IN upload_file() 2020-05-05 12:22:32,752:eu_debug: Attempting to generate new file upload credentials 2020-05-05 12:22:33,287:eu_debug: Success: upload credentials for 'ENCFF223HHL' regenerated. 2020-05-05 12:22:33,287:eu_debug: >>>>>>GET ENCFF223HHL From DCC with URL https://www.encodeproject.org/ENCFF223HHL/?format=json&datastore=database 2020-05-05 12:22:33,883:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF.growth_screen.1438.fastq.gz s3://encode-files/2020/05/05/08e75723-43a4-46d0-9835-c2c3cc2ab101/ENCFF223HHL.fastq.gz'. 2020-05-05 12:22:38,835:eu_debug: AWS upload successful. 2020-05-05 12:22:38,838:eu_debug: IN post(). 2020-05-05 12:22:40,865:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14", "file_format": "fastq", "file_size": 130810210, "lab": "/labs/will-greenleaf/", "md5sum": "e7711e3d21c5ee7c42b07aa941c60469", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T14-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1766.fastq.gz" } 2020-05-05 12:22:41,383:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:e7711e3d21c5ee7c42b07aa941c60469'), ('alias', 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep1.fastq.gz')]"} 2020-05-05 12:22:41,383:eu_debug: >>>>>>GET will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep1.fastq.gz From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep1.fastq.gz/?format=json&datastore=database 2020-05-05 12:22:41,965:eu_debug: Will not POST 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep1.fastq.gz' since it already exists with aliases '['will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep1.fastq.gz']'. 2020-05-05 12:22:41,967:eu_debug: IN post(). 2020-05-05 12:22:45,481:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep2.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep2.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14", "file_format": "fastq", "file_size": 240033220, "lab": "/labs/will-greenleaf/", "md5sum": "c7ef684da35befe84d5b0caa6c6fadf7", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen_T14-R2_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1767.fastq.gz" } 2020-05-05 12:22:45,975:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep2.fastq.gz'), ('alias', 'md5:c7ef684da35befe84d5b0caa6c6fadf7')]"} 2020-05-05 12:22:45,976:eu_debug: >>>>>>GET will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep2.fastq.gz From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep2.fastq.gz/?format=json&datastore=database 2020-05-05 12:22:47,114:eu_debug: Will not POST 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep2.fastq.gz' since it already exists with aliases '['will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep2.fastq.gz']'. 2020-05-05 12:22:47,116:eu_debug: IN post(). 2020-05-05 12:22:49,312:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14", "file_format": "fastq", "file_size": 142701831, "lab": "/labs/will-greenleaf/", "md5sum": "e4effa78a8a12d202770d16f9511b3f5", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T14-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1770.fastq.gz" } 2020-05-05 12:22:49,798:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:e4effa78a8a12d202770d16f9511b3f5'), ('alias', 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep1.fastq.gz')]"} 2020-05-05 12:22:49,799:eu_debug: >>>>>>GET will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep1.fastq.gz From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep1.fastq.gz/?format=json&datastore=database 2020-05-05 12:22:50,376:eu_debug: Will not POST 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep1.fastq.gz' since it already exists with aliases '['will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep1.fastq.gz']'. 2020-05-05 12:22:50,376:eu_debug: IN post(). 2020-05-05 12:22:52,101:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep2.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep2.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14", "file_format": "fastq", "file_size": 110554118, "lab": "/labs/will-greenleaf/", "md5sum": "d9a177d9b57bb8dd7964e2c69981dfaf", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen_T14-R2_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1793.fastq.gz" } 2020-05-05 12:22:52,597:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:d9a177d9b57bb8dd7964e2c69981dfaf'), ('alias', 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep2.fastq.gz')]"} 2020-05-05 12:22:52,597:eu_debug: >>>>>>GET will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep2.fastq.gz From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep2.fastq.gz/?format=json&datastore=database 2020-05-05 12:22:53,510:eu_debug: Will not POST 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep2.fastq.gz' since it already exists with aliases '['will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep2.fastq.gz']'. 2020-05-05 12:22:53,511:eu_debug: IN post(). 2020-05-05 12:22:55,469:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14", "file_format": "fastq", "file_size": 125718661, "lab": "/labs/will-greenleaf/", "md5sum": "22381b23ca56f664c1fbdd5054ffc136", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T14-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1794.fastq.gz" } 2020-05-05 12:22:55,978:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:22381b23ca56f664c1fbdd5054ffc136'), ('alias', 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep1.fastq.gz')]"} 2020-05-05 12:22:55,978:eu_debug: >>>>>>GET will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep1.fastq.gz From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep1.fastq.gz/?format=json&datastore=database 2020-05-05 12:22:56,553:eu_debug: Will not POST 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep1.fastq.gz' since it already exists with aliases '['will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep1.fastq.gz']'. 2020-05-05 12:22:56,554:eu_debug: IN post(). 2020-05-05 12:22:58,753:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep2.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep2.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14", "file_format": "fastq", "file_size": 147615901, "lab": "/labs/will-greenleaf/", "md5sum": "8d049574f9108f428c436bcec5ca9120", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen_T14-R2_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1795.fastq.gz" } 2020-05-05 12:22:59,237:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep2.fastq.gz'), ('alias', 'md5:8d049574f9108f428c436bcec5ca9120')]"} 2020-05-05 12:22:59,315:eu_debug: >>>>>>GET will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep2.fastq.gz From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep2.fastq.gz/?format=json&datastore=database 2020-05-05 12:22:59,914:eu_debug: Will not POST 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep2.fastq.gz' since it already exists with aliases '['will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep2.fastq.gz']'. 2020-05-05 12:22:59,914:eu_debug: IN post(). 2020-05-05 12:23:03,774:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep1.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep1.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14", "file_format": "fastq", "file_size": 251135684, "lab": "/labs/will-greenleaf/", "md5sum": "ea5231b88994d173905da429187c13ed", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T14-R1_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1768.fastq.gz" } 2020-05-05 12:23:04,242:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep1.fastq.gz'), ('alias', 'md5:ea5231b88994d173905da429187c13ed')]"} 2020-05-05 12:23:04,242:eu_debug: >>>>>>GET will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep1.fastq.gz From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep1.fastq.gz/?format=json&datastore=database 2020-05-05 12:23:04,828:eu_debug: Will not POST 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep1.fastq.gz' since it already exists with aliases '['will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep1.fastq.gz']'. 2020-05-05 12:23:04,828:eu_debug: IN post(). 2020-05-05 12:23:06,999:eu_debug: <<<<<< POST file record will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep2.fastq.gz To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep2.fastq.gz" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14", "file_format": "fastq", "file_size": 140951012, "lab": "/labs/will-greenleaf/", "md5sum": "df1b2b6b4e9037d8484bcf78c10bf7ee", "output_type": "reads", "platform": "encode:HiSeq4000", "read_length": 21, "replicate": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen_T14-R2_T1", "run_type": "single-ended", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.1769.fastq.gz" } 2020-05-05 12:23:07,476:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:df1b2b6b4e9037d8484bcf78c10bf7ee'), ('alias', 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep2.fastq.gz')]"} 2020-05-05 12:23:07,477:eu_debug: >>>>>>GET will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep2.fastq.gz From DCC with URL https://www.encodeproject.org/will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep2.fastq.gz/?format=json&datastore=database 2020-05-05 12:23:08,177:eu_debug: Will not POST 'will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep2.fastq.gz' since it already exists with aliases '['will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep2.fastq.gz']'. 2020-05-05 12:44:51,205:eu_debug: Connecting to www.encodeproject.org 2020-05-05 12:44:51,206:eu_debug: submission=False: In non-submission mode. 2020-05-05 12:44:53,549:eu_debug: submission=True: In submission mode. 2020-05-05 12:44:53,566:eu_debug: IN post(). 2020-05-05 12:44:53,691:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPR_CTCF-FineMap_reference To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPR_CTCF-FineMap_reference" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPR_CTCF-FineMap", "file_format": "csv", "file_size": 5411243, "lab": "/labs/will-greenleaf/", "md5sum": "ea7a7e97c1887977d477dfa27bf33466", "output_type": "reference", "submitted_file_name": "CRISPR-screen.CTCF_FineMap.L7-fine_mapping_oligos.csv" } 2020-05-05 12:44:53,792:eu_debug: Failed to POST will-greenleaf:K562_CRISPR_CTCF-FineMap_reference 2020-05-05 12:44:53,792:eu_debug: <<<<<< DCC POST RESPONSE: 2020-05-05 12:44:53,793:eu_debug: { "@type": [ "ValidationFailure", "Error" ], "code": 422, "description": "Failed validation", "errors": [ { "description": "'reference' is not valid under any of the given schemas", "location": "body", "name": [ "output_type" ] }, { "description": "'will-greenleaf:K562_CRISPR_CTCF-FineMap' not found", "location": "body", "name": [ "dataset" ] } ], "status": "error", "title": "Unprocessable Entity" } 2020-05-05 12:45:53,553:eu_debug: Connecting to www.encodeproject.org 2020-05-05 12:45:53,554:eu_debug: submission=False: In non-submission mode. 2020-05-05 12:45:56,177:eu_debug: submission=True: In submission mode. 2020-05-05 12:45:56,185:eu_debug: IN post(). 2020-05-05 12:45:56,208:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPR_CTCF-FineMap_reference To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPR_CTCF-FineMap_reference" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPR_CTCF-FineMap", "file_format": "csv", "file_size": 5411243, "lab": "/labs/will-greenleaf/", "md5sum": "ea7a7e97c1887977d477dfa27bf33466", "output_type": "elements reference", "submitted_file_name": "CRISPR-screen.CTCF_FineMap.L7-fine_mapping_oligos.csv" } 2020-05-05 12:45:56,312:eu_debug: Failed to POST will-greenleaf:K562_CRISPR_CTCF-FineMap_reference 2020-05-05 12:45:56,312:eu_debug: <<<<<< DCC POST RESPONSE: 2020-05-05 12:45:56,313:eu_debug: { "@type": [ "ValidationFailure", "Error" ], "code": 422, "description": "Failed validation", "errors": [ { "description": "'will-greenleaf:K562_CRISPR_CTCF-FineMap' not found", "location": "body", "name": [ "dataset" ] } ], "status": "error", "title": "Unprocessable Entity" } 2020-05-05 12:46:49,778:eu_debug: Connecting to www.encodeproject.org 2020-05-05 12:46:49,780:eu_debug: submission=False: In non-submission mode. 2020-05-05 12:46:52,124:eu_debug: submission=True: In submission mode. 2020-05-05 12:46:52,131:eu_debug: IN post(). 2020-05-05 12:46:52,151:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPR_CTCF-FineMap_reference To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPR_CTCF-FineMap_reference" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPR_CTCF-FineMap_reference", "file_format": "csv", "file_size": 5411243, "lab": "/labs/will-greenleaf/", "md5sum": "ea7a7e97c1887977d477dfa27bf33466", "output_type": "elements reference", "submitted_file_name": "CRISPR-screen.CTCF_FineMap.L7-fine_mapping_oligos.csv" } 2020-05-05 12:46:52,603:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPR_CTCF-FineMap_reference')]"} 2020-05-05 12:46:52,603:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPR_CTCF-FineMap_reference From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPR_CTCF-FineMap_reference/?format=json&datastore=database 2020-05-05 12:46:52,774:eu_debug: Will not POST 'will-greenleaf:K562_CRISPR_CTCF-FineMap_reference' since it already exists with aliases '['will-greenleaf:K562_CRISPR_CTCF-FineMap_reference']'. 2020-05-05 12:47:13,697:eu_debug: Connecting to www.encodeproject.org 2020-05-05 12:47:13,698:eu_debug: submission=False: In non-submission mode. 2020-05-05 12:47:16,102:eu_debug: submission=True: In submission mode. 2020-05-05 12:47:16,111:eu_debug: IN post(). 2020-05-05 12:47:16,126:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPR_CTCF-FineMap_reference.csv To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPR_CTCF-FineMap_reference.csv" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPR_CTCF-FineMap_reference", "file_format": "csv", "file_size": 5411243, "lab": "/labs/will-greenleaf/", "md5sum": "ea7a7e97c1887977d477dfa27bf33466", "output_type": "elements reference", "submitted_file_name": "CRISPR-screen.CTCF_FineMap.L7-fine_mapping_oligos.csv" } 2020-05-05 12:47:16,587:eu_debug: Success. 2020-05-05 12:47:16,588:eu_debug: IN upload_file() 2020-05-05 12:47:16,588:eu_debug: Attempting to generate new file upload credentials 2020-05-05 12:47:17,050:eu_debug: Success: upload credentials for 'ENCFF895ROH' regenerated. 2020-05-05 12:47:17,050:eu_debug: >>>>>>GET ENCFF895ROH From DCC with URL https://www.encodeproject.org/ENCFF895ROH/?format=json&datastore=database 2020-05-05 12:47:17,238:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF_FineMap.L7-fine_mapping_oligos.csv s3://encode-files/2020/05/05/9d852505-dff0-4662-8a5c-2248355e5bbf/ENCFF895ROH.csv'. 2020-05-05 12:47:19,475:eu_debug: AWS upload successful. 2020-05-05 12:48:22,951:eu_debug: Connecting to www.encodeproject.org 2020-05-05 12:48:22,953:eu_debug: submission=False: In non-submission mode. 2020-05-05 12:48:23,317:eu_debug: submission=True: In submission mode. 2020-05-05 13:08:00,278:eu_debug: Connecting to www.encodeproject.org 2020-05-05 13:08:00,280:eu_debug: submission=False: In non-submission mode. 2020-05-05 13:08:00,788:eu_debug: submission=True: In submission mode. 2020-05-05 13:08:00,800:eu_debug: IN post(). 2020-05-05 13:08:02,198:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPR_tiling_reference-file.csv To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPR_tiling_reference-file.csv" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPR_tiling_reference", "file_format": "csv", "file_size": 3027580, "lab": "/labs/will-greenleaf/", "md5sum": "222ca03327e753afbabd50c8d54bee82", "output_type": "elements reference", "submitted_file_name": "CRISPR-screen.tiling.tiling_library_with_controls.csv" } 2020-05-05 13:08:02,702:eu_debug: Success. 2020-05-05 13:08:02,702:eu_debug: IN upload_file() 2020-05-05 13:08:02,702:eu_debug: Attempting to generate new file upload credentials 2020-05-05 13:08:03,195:eu_debug: Success: upload credentials for 'ENCFF143LBP' regenerated. 2020-05-05 13:08:03,195:eu_debug: >>>>>>GET ENCFF143LBP From DCC with URL https://www.encodeproject.org/ENCFF143LBP/?format=json&datastore=database 2020-05-05 13:08:03,410:eu_debug: Running command 'aws s3 cp CRISPR-screen.tiling.tiling_library_with_controls.csv s3://encode-files/2020/05/05/d1f415b9-68e8-46fa-b608-8d50e3964a69/ENCFF143LBP.csv'. 2020-05-05 13:08:05,636:eu_debug: AWS upload successful. 2020-05-05 13:10:52,305:eu_debug: Connecting to www.encodeproject.org 2020-05-05 13:10:52,306:eu_debug: submission=False: In non-submission mode. 2020-05-05 13:10:52,904:eu_debug: submission=True: In submission mode. 2020-05-05 13:10:52,912:eu_debug: IN post(). 2020-05-05 13:10:52,970:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPR_CTCF-growth_screen_reference.csv To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPR_CTCF-growth_screen_reference.csv" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPR_CTCF-growth_screen_reference", "file_format": "csv", "file_size": 2084937, "lab": "/labs/will-greenleaf/", "md5sum": "5ebac5fe2855709b2b6358595ee4d047", "output_type": "elements reference", "submitted_file_name": "CRISPR-screen.CTCF.high_coverage.oilgo_design.csv" } 2020-05-05 13:10:53,507:eu_debug: Success. 2020-05-05 13:10:53,507:eu_debug: IN upload_file() 2020-05-05 13:10:53,507:eu_debug: Attempting to generate new file upload credentials 2020-05-05 13:10:53,991:eu_debug: Success: upload credentials for 'ENCFF669ZYK' regenerated. 2020-05-05 13:10:53,991:eu_debug: >>>>>>GET ENCFF669ZYK From DCC with URL https://www.encodeproject.org/ENCFF669ZYK/?format=json&datastore=database 2020-05-05 13:10:54,179:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF.high_coverage.oilgo_design.csv s3://encode-files/2020/05/05/1713bc5a-0e67-4620-8133-7dbb2bcf65d8/ENCFF669ZYK.csv'. 2020-05-05 13:10:56,224:eu_debug: AWS upload successful. 2020-05-14 05:09:46,989:eu_debug: Connecting to www.encodeproject.org 2020-05-14 05:09:47,012:eu_debug: submission=False: In non-submission mode. 2020-05-14 05:09:47,370:eu_debug: submission=True: In submission mode. 2020-05-14 05:09:47,378:eu_debug: IN post(). 2020-05-14 05:09:47,379:eu_debug: <<<<<< POST biosample record will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R1 To DCC with URL https://www.encodeproject.org/biosample and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R1" ], "award": "/awards/UM1HG009436/", "biosample_ontology": "encode:K562", "donor": "ENCDO000AAD", "genetic_modifications": [ "will-greenleaf:deletion" ], "lab": "/labs/will-greenleaf/", "organism": "human", "post_nucleic_acid_delivery_time": 6, "post_nucleic_acid_delivery_time_units": "day", "source": "/sources/michael-bassik/" } 2020-05-14 05:09:47,523:eu_debug: Failed to POST will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R1 2020-05-14 05:09:47,524:eu_debug: <<<<<< DCC POST RESPONSE: 2020-05-14 05:09:47,524:eu_debug: { "@type": [ "ValidationFailure", "Error" ], "code": 422, "description": "Failed validation", "errors": [ { "description": "'will-greenleaf:deletion' not found", "location": "body", "name": [ "genetic_modifications", 0 ] } ], "status": "error", "title": "Unprocessable Entity" } 2020-05-14 05:25:41,340:eu_debug: Connecting to www.encodeproject.org 2020-05-14 05:25:41,341:eu_debug: submission=False: In non-submission mode. 2020-05-14 05:25:41,621:eu_debug: submission=True: In submission mode. 2020-05-14 05:25:41,633:eu_debug: IN post(). 2020-05-14 05:25:41,799:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20", "derived_from": [ "will-greenleaf:K562_CTCF-FineMap_Plasmid_R1.fastq.gz", "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T1.fastq.gz", "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T2.fastq.gz" ], "file_format": "csv", "file_size": 4279148, "lab": "/labs/will-greenleaf/", "md5sum": "f881e74a629101f8a5f130577c1215d6", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF_FineMap.T20vsPlas_FineMapConv_BR2_CTCF_rhos.csv" } 2020-05-14 05:25:42,377:eu_debug: Success. 2020-05-14 05:25:42,378:eu_debug: IN upload_file() 2020-05-14 05:25:42,378:eu_debug: Attempting to generate new file upload credentials 2020-05-14 05:25:42,890:eu_debug: Success: upload credentials for 'ENCFF988BHC' regenerated. 2020-05-14 05:25:42,890:eu_debug: >>>>>>GET ENCFF988BHC From DCC with URL https://www.encodeproject.org/ENCFF988BHC/?format=json&datastore=database 2020-05-14 05:25:43,143:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF_FineMap.T20vsPlas_FineMapConv_BR2_CTCF_rhos.csv s3://encode-files/2020/05/14/0ac76bfa-e8a8-40b9-baa4-ef4a91143dd5/ENCFF988BHC.csv'. 2020-05-14 05:25:46,695:eu_debug: AWS upload successful. 2020-05-14 05:25:46,697:eu_debug: IN post(). 2020-05-14 05:25:46,769:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 829301, "lab": "/labs/will-greenleaf/", "md5sum": "516150d5d65799d4d4561f688d19e00d", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_A1_CTCF_rhos.csv" } 2020-05-14 05:25:47,341:eu_debug: Success. 2020-05-14 05:25:47,342:eu_debug: IN upload_file() 2020-05-14 05:25:47,342:eu_debug: Attempting to generate new file upload credentials 2020-05-14 05:25:47,843:eu_debug: Success: upload credentials for 'ENCFF558AIV' regenerated. 2020-05-14 05:25:47,843:eu_debug: >>>>>>GET ENCFF558AIV From DCC with URL https://www.encodeproject.org/ENCFF558AIV/?format=json&datastore=database 2020-05-14 05:25:48,082:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_A1_CTCF_rhos.csv s3://encode-files/2020/05/14/f5b018a1-d1ec-4c96-92e5-c5ee100f7ca8/ENCFF558AIV.csv'. 2020-05-14 05:25:50,218:eu_debug: AWS upload successful. 2020-05-14 05:25:50,219:eu_debug: IN post(). 2020-05-14 05:25:50,275:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R2.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 829031, "lab": "/labs/will-greenleaf/", "md5sum": "f9aa5c48d892748cde13d8d3154d5a1d", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_A2_CTCF_rhos.csv" } 2020-05-14 05:25:50,796:eu_debug: Success. 2020-05-14 05:25:50,796:eu_debug: IN upload_file() 2020-05-14 05:25:50,796:eu_debug: Attempting to generate new file upload credentials 2020-05-14 05:25:51,298:eu_debug: Success: upload credentials for 'ENCFF212NQP' regenerated. 2020-05-14 05:25:51,299:eu_debug: >>>>>>GET ENCFF212NQP From DCC with URL https://www.encodeproject.org/ENCFF212NQP/?format=json&datastore=database 2020-05-14 05:25:51,531:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_A2_CTCF_rhos.csv s3://encode-files/2020/05/14/37525cdd-883f-4e0f-a57f-0c9da62cb3d4/ENCFF212NQP.csv'. 2020-05-14 05:25:53,579:eu_debug: AWS upload successful. 2020-05-14 05:25:53,581:eu_debug: IN post(). 2020-05-14 05:25:53,666:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 835637, "lab": "/labs/will-greenleaf/", "md5sum": "efa7e27f7ee0a9d9de9420aa72b26b8c", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_D1_CTCF_rhos.csv" } 2020-05-14 05:25:54,212:eu_debug: Success. 2020-05-14 05:25:54,213:eu_debug: IN upload_file() 2020-05-14 05:25:54,213:eu_debug: Attempting to generate new file upload credentials 2020-05-14 05:25:54,729:eu_debug: Success: upload credentials for 'ENCFF910EGU' regenerated. 2020-05-14 05:25:54,730:eu_debug: >>>>>>GET ENCFF910EGU From DCC with URL https://www.encodeproject.org/ENCFF910EGU/?format=json&datastore=database 2020-05-14 05:25:54,977:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_D1_CTCF_rhos.csv s3://encode-files/2020/05/14/d05b245d-4406-4d26-999a-5a6121708ba0/ENCFF910EGU.csv'. 2020-05-14 05:25:56,856:eu_debug: AWS upload successful. 2020-05-14 05:25:56,857:eu_debug: IN post(). 2020-05-14 05:25:56,928:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R2.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 835033, "lab": "/labs/will-greenleaf/", "md5sum": "152489e28c52d85aa09cd40f73aa5438", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_D2_CTCF_rhos.csv" } 2020-05-14 05:25:57,443:eu_debug: Success. 2020-05-14 05:25:57,444:eu_debug: IN upload_file() 2020-05-14 05:25:57,444:eu_debug: Attempting to generate new file upload credentials 2020-05-14 05:25:57,971:eu_debug: Success: upload credentials for 'ENCFF826DNP' regenerated. 2020-05-14 05:25:57,971:eu_debug: >>>>>>GET ENCFF826DNP From DCC with URL https://www.encodeproject.org/ENCFF826DNP/?format=json&datastore=database 2020-05-14 05:25:58,218:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_D2_CTCF_rhos.csv s3://encode-files/2020/05/14/7b2a443a-7d66-4397-945c-6e6944d9e980/ENCFF826DNP.csv'. 2020-05-14 05:26:00,133:eu_debug: AWS upload successful. 2020-05-14 05:26:00,134:eu_debug: IN post(). 2020-05-14 05:26:00,275:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R1.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 835979, "lab": "/labs/will-greenleaf/", "md5sum": "4e3874987d9458b909a04015237a0433", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_I1_CTCF_rhos.csv" } 2020-05-14 05:26:00,791:eu_debug: Success. 2020-05-14 05:26:00,791:eu_debug: IN upload_file() 2020-05-14 05:26:00,791:eu_debug: Attempting to generate new file upload credentials 2020-05-14 05:26:01,316:eu_debug: Success: upload credentials for 'ENCFF318ZVU' regenerated. 2020-05-14 05:26:01,317:eu_debug: >>>>>>GET ENCFF318ZVU From DCC with URL https://www.encodeproject.org/ENCFF318ZVU/?format=json&datastore=database 2020-05-14 05:26:01,563:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_I1_CTCF_rhos.csv s3://encode-files/2020/05/14/09676e38-b6f4-497c-86e0-03b4a8cd5561/ENCFF318ZVU.csv'. 2020-05-14 05:26:03,502:eu_debug: AWS upload successful. 2020-05-14 05:26:03,503:eu_debug: IN post(). 2020-05-14 05:26:03,563:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R2.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 834589, "lab": "/labs/will-greenleaf/", "md5sum": "bcee4e5ea34ce3efa37318e3e2b7a421", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_I2_CTCF_rhos.csv" } 2020-05-14 05:26:04,058:eu_debug: Success. 2020-05-14 05:26:04,058:eu_debug: IN upload_file() 2020-05-14 05:26:04,059:eu_debug: Attempting to generate new file upload credentials 2020-05-14 05:26:04,561:eu_debug: Success: upload credentials for 'ENCFF789HHY' regenerated. 2020-05-14 05:26:04,561:eu_debug: >>>>>>GET ENCFF789HHY From DCC with URL https://www.encodeproject.org/ENCFF789HHY/?format=json&datastore=database 2020-05-14 05:26:04,803:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_I2_CTCF_rhos.csv s3://encode-files/2020/05/14/ed95c139-793e-4518-86bb-e9c152cc850a/ENCFF789HHY.csv'. 2020-05-14 05:26:06,652:eu_debug: AWS upload successful. 2020-05-14 05:26:06,653:eu_debug: IN post(). 2020-05-14 05:26:06,733:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0_R1.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 828093, "lab": "/labs/will-greenleaf/", "md5sum": "d0dab48384aafce2fb1b8640ebc51c3b", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_K1_CTCF_rhos.csv" } 2020-05-14 05:26:07,241:eu_debug: Success. 2020-05-14 05:26:07,241:eu_debug: IN upload_file() 2020-05-14 05:26:07,241:eu_debug: Attempting to generate new file upload credentials 2020-05-14 05:26:07,772:eu_debug: Success: upload credentials for 'ENCFF584AJL' regenerated. 2020-05-14 05:26:07,773:eu_debug: >>>>>>GET ENCFF584AJL From DCC with URL https://www.encodeproject.org/ENCFF584AJL/?format=json&datastore=database 2020-05-14 05:26:08,005:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_K1_CTCF_rhos.csv s3://encode-files/2020/05/14/3e265e50-b75c-45bb-aa70-8f8c7fb0acc3/ENCFF584AJL.csv'. 2020-05-14 05:26:09,969:eu_debug: AWS upload successful. 2020-05-14 05:26:09,970:eu_debug: IN post(). 2020-05-14 05:26:10,039:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0_R2.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 834744, "lab": "/labs/will-greenleaf/", "md5sum": "a36e72b9b2d5a207f2da3b5c86032841", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_K2_CTCF_rhos.csv" } 2020-05-14 05:26:10,556:eu_debug: Success. 2020-05-14 05:26:10,557:eu_debug: IN upload_file() 2020-05-14 05:26:10,557:eu_debug: Attempting to generate new file upload credentials 2020-05-14 05:26:11,048:eu_debug: Success: upload credentials for 'ENCFF531SOC' regenerated. 2020-05-14 05:26:11,049:eu_debug: >>>>>>GET ENCFF531SOC From DCC with URL https://www.encodeproject.org/ENCFF531SOC/?format=json&datastore=database 2020-05-14 05:26:11,295:eu_debug: Running command 'aws s3 cp CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_K2_CTCF_rhos.csv s3://encode-files/2020/05/14/a7cdfa40-543a-40c9-a5b3-f3e63aee784e/ENCFF531SOC.csv'. 2020-05-14 05:26:13,197:eu_debug: AWS upload successful. 2020-05-14 05:26:13,198:eu_debug: IN post(). 2020-05-14 05:26:13,267:eu_debug: <<<<<< POST file record will-greenleaf:K562-CRISPRa-tiling-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562-CRISPRa-tiling-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562-CRISPRa-tiling", "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.CRISPRa_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.CRISPRa_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 2058544, "lab": "/labs/will-greenleaf/", "md5sum": "3f8a47c3486440bce53044c1332609fa", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.tiling.T14vsPlasmid_A_R1_Tiling_rhos.csv" } 2020-05-14 05:26:13,389:eu_debug: Failed to POST will-greenleaf:K562-CRISPRa-tiling-enrchment-R1 2020-05-14 05:26:13,393:eu_debug: <<<<<< DCC POST RESPONSE: 2020-05-14 05:26:13,393:eu_debug: { "@type": [ "ValidationFailure", "Error" ], "code": 422, "description": "Failed validation", "errors": [ { "description": "'will-greenleaf:K562-CRISPRa-tiling' not found", "location": "body", "name": [ "dataset" ] } ], "status": "error", "title": "Unprocessable Entity" } 2020-05-14 05:28:13,666:eu_debug: Connecting to www.encodeproject.org 2020-05-14 05:28:13,667:eu_debug: submission=False: In non-submission mode. 2020-05-14 05:28:13,927:eu_debug: submission=True: In submission mode. 2020-05-14 05:28:13,935:eu_debug: IN post(). 2020-05-14 05:28:13,955:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20", "derived_from": [ "will-greenleaf:K562_CTCF-FineMap_Plasmid_R1.fastq.gz", "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T1.fastq.gz", "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T2.fastq.gz" ], "file_format": "csv", "file_size": 4279148, "lab": "/labs/will-greenleaf/", "md5sum": "f881e74a629101f8a5f130577c1215d6", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF_FineMap.T20vsPlas_FineMapConv_BR2_CTCF_rhos.csv" } 2020-05-14 05:28:14,415:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment'), ('alias', 'md5:f881e74a629101f8a5f130577c1215d6')]"} 2020-05-14 05:28:14,415:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment/?format=json&datastore=database 2020-05-14 05:28:14,678:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment']'. 2020-05-14 05:28:14,678:eu_debug: IN post(). 2020-05-14 05:28:14,685:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 829301, "lab": "/labs/will-greenleaf/", "md5sum": "516150d5d65799d4d4561f688d19e00d", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_A1_CTCF_rhos.csv" } 2020-05-14 05:28:15,154:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:516150d5d65799d4d4561f688d19e00d'), ('alias', 'will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1')]"} 2020-05-14 05:28:15,155:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1/?format=json&datastore=database 2020-05-14 05:28:15,402:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1' since it already exists with aliases '['will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1']'. 2020-05-14 05:28:15,402:eu_debug: IN post(). 2020-05-14 05:28:15,409:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R2.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 829031, "lab": "/labs/will-greenleaf/", "md5sum": "f9aa5c48d892748cde13d8d3154d5a1d", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_A2_CTCF_rhos.csv" } 2020-05-14 05:28:15,875:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2'), ('alias', 'md5:f9aa5c48d892748cde13d8d3154d5a1d')]"} 2020-05-14 05:28:15,875:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2/?format=json&datastore=database 2020-05-14 05:28:16,110:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2' since it already exists with aliases '['will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2']'. 2020-05-14 05:28:16,110:eu_debug: IN post(). 2020-05-14 05:28:16,117:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 835637, "lab": "/labs/will-greenleaf/", "md5sum": "efa7e27f7ee0a9d9de9420aa72b26b8c", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_D1_CTCF_rhos.csv" } 2020-05-14 05:28:16,610:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:efa7e27f7ee0a9d9de9420aa72b26b8c'), ('alias', 'will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1')]"} 2020-05-14 05:28:16,610:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1/?format=json&datastore=database 2020-05-14 05:28:16,852:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1' since it already exists with aliases '['will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1']'. 2020-05-14 05:28:16,852:eu_debug: IN post(). 2020-05-14 05:28:16,859:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R2.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 835033, "lab": "/labs/will-greenleaf/", "md5sum": "152489e28c52d85aa09cd40f73aa5438", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_D2_CTCF_rhos.csv" } 2020-05-14 05:28:17,337:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2'), ('alias', 'md5:152489e28c52d85aa09cd40f73aa5438')]"} 2020-05-14 05:28:17,338:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2/?format=json&datastore=database 2020-05-14 05:28:17,590:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2' since it already exists with aliases '['will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2']'. 2020-05-14 05:28:17,591:eu_debug: IN post(). 2020-05-14 05:28:17,598:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R1.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 835979, "lab": "/labs/will-greenleaf/", "md5sum": "4e3874987d9458b909a04015237a0433", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_I1_CTCF_rhos.csv" } 2020-05-14 05:28:18,061:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:4e3874987d9458b909a04015237a0433'), ('alias', 'will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1')]"} 2020-05-14 05:28:18,061:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1/?format=json&datastore=database 2020-05-14 05:28:18,308:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1' since it already exists with aliases '['will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1']'. 2020-05-14 05:28:18,309:eu_debug: IN post(). 2020-05-14 05:28:18,316:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R2.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 834589, "lab": "/labs/will-greenleaf/", "md5sum": "bcee4e5ea34ce3efa37318e3e2b7a421", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_I2_CTCF_rhos.csv" } 2020-05-14 05:28:18,790:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2'), ('alias', 'md5:bcee4e5ea34ce3efa37318e3e2b7a421')]"} 2020-05-14 05:28:18,790:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2/?format=json&datastore=database 2020-05-14 05:28:19,038:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2' since it already exists with aliases '['will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2']'. 2020-05-14 05:28:19,038:eu_debug: IN post(). 2020-05-14 05:28:19,051:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0_R1.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 828093, "lab": "/labs/will-greenleaf/", "md5sum": "d0dab48384aafce2fb1b8640ebc51c3b", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_K1_CTCF_rhos.csv" } 2020-05-14 05:28:19,543:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1'), ('alias', 'md5:d0dab48384aafce2fb1b8640ebc51c3b')]"} 2020-05-14 05:28:19,544:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1/?format=json&datastore=database 2020-05-14 05:28:19,791:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1']'. 2020-05-14 05:28:19,798:eu_debug: IN post(). 2020-05-14 05:28:19,812:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0_R2.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 834744, "lab": "/labs/will-greenleaf/", "md5sum": "a36e72b9b2d5a207f2da3b5c86032841", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_K2_CTCF_rhos.csv" } 2020-05-14 05:28:20,295:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:a36e72b9b2d5a207f2da3b5c86032841'), ('alias', 'will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2')]"} 2020-05-14 05:28:20,295:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2/?format=json&datastore=database 2020-05-14 05:28:20,538:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2']'. 2020-05-14 05:28:20,539:eu_debug: IN post(). 2020-05-14 05:28:20,551:eu_debug: <<<<<< POST file record will-greenleaf:K562-CRISPRa-tiling-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562-CRISPRa-tiling-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562-CRISPRa-tiling-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.CRISPRa_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.CRISPRa_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 2058544, "lab": "/labs/will-greenleaf/", "md5sum": "3f8a47c3486440bce53044c1332609fa", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.tiling.T14vsPlasmid_A_R1_Tiling_rhos.csv" } 2020-05-14 05:28:20,655:eu_debug: Failed to POST will-greenleaf:K562-CRISPRa-tiling-enrchment-R1 2020-05-14 05:28:20,655:eu_debug: <<<<<< DCC POST RESPONSE: 2020-05-14 05:28:20,655:eu_debug: { "@type": [ "ValidationFailure", "Error" ], "code": 422, "description": "Failed validation", "errors": [ { "description": "'will-greenleaf:K562-CRISPRa-tiling-T14' not found", "location": "body", "name": [ "dataset" ] } ], "status": "error", "title": "Unprocessable Entity" } 2020-05-14 11:45:48,213:eu_debug: Connecting to www.encodeproject.org 2020-05-14 11:45:48,215:eu_debug: submission=False: In non-submission mode. 2020-05-14 11:45:48,487:eu_debug: submission=True: In submission mode. 2020-05-14 11:45:48,497:eu_debug: IN post(). 2020-05-14 11:45:48,510:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20", "derived_from": [ "will-greenleaf:K562_CTCF-FineMap_Plasmid_R1.fastq.gz", "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T1.fastq.gz", "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T2.fastq.gz" ], "file_format": "csv", "file_size": 4279148, "lab": "/labs/will-greenleaf/", "md5sum": "f881e74a629101f8a5f130577c1215d6", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF_FineMap.T20vsPlas_FineMapConv_BR2_CTCF_rhos.csv" } 2020-05-14 11:45:48,972:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:f881e74a629101f8a5f130577c1215d6'), ('alias', 'will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment')]"} 2020-05-14 11:45:48,972:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment/?format=json&datastore=database 2020-05-14 11:45:49,244:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment']'. 2020-05-14 11:45:49,244:eu_debug: IN post(). 2020-05-14 11:45:49,249:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 829301, "lab": "/labs/will-greenleaf/", "md5sum": "516150d5d65799d4d4561f688d19e00d", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_A1_CTCF_rhos.csv" } 2020-05-14 11:45:49,710:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:516150d5d65799d4d4561f688d19e00d'), ('alias', 'will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1')]"} 2020-05-14 11:45:49,710:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1/?format=json&datastore=database 2020-05-14 11:45:49,954:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1' since it already exists with aliases '['will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1']'. 2020-05-14 11:45:49,954:eu_debug: IN post(). 2020-05-14 11:45:49,959:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R2.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 829031, "lab": "/labs/will-greenleaf/", "md5sum": "f9aa5c48d892748cde13d8d3154d5a1d", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_A2_CTCF_rhos.csv" } 2020-05-14 11:45:50,411:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:f9aa5c48d892748cde13d8d3154d5a1d'), ('alias', 'will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2')]"} 2020-05-14 11:45:50,411:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2/?format=json&datastore=database 2020-05-14 11:45:50,644:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2' since it already exists with aliases '['will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2']'. 2020-05-14 11:45:50,644:eu_debug: IN post(). 2020-05-14 11:45:50,649:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 835637, "lab": "/labs/will-greenleaf/", "md5sum": "efa7e27f7ee0a9d9de9420aa72b26b8c", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_D1_CTCF_rhos.csv" } 2020-05-14 11:45:51,103:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1'), ('alias', 'md5:efa7e27f7ee0a9d9de9420aa72b26b8c')]"} 2020-05-14 11:45:51,104:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1/?format=json&datastore=database 2020-05-14 11:45:51,351:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1' since it already exists with aliases '['will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1']'. 2020-05-14 11:45:51,351:eu_debug: IN post(). 2020-05-14 11:45:51,356:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R2.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 835033, "lab": "/labs/will-greenleaf/", "md5sum": "152489e28c52d85aa09cd40f73aa5438", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_D2_CTCF_rhos.csv" } 2020-05-14 11:45:51,844:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:152489e28c52d85aa09cd40f73aa5438'), ('alias', 'will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2')]"} 2020-05-14 11:45:51,845:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2/?format=json&datastore=database 2020-05-14 11:45:52,077:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2' since it already exists with aliases '['will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2']'. 2020-05-14 11:45:52,078:eu_debug: IN post(). 2020-05-14 11:45:52,082:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R1.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 835979, "lab": "/labs/will-greenleaf/", "md5sum": "4e3874987d9458b909a04015237a0433", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_I1_CTCF_rhos.csv" } 2020-05-14 11:45:52,550:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1'), ('alias', 'md5:4e3874987d9458b909a04015237a0433')]"} 2020-05-14 11:45:52,551:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1/?format=json&datastore=database 2020-05-14 11:45:52,790:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1' since it already exists with aliases '['will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1']'. 2020-05-14 11:45:52,790:eu_debug: IN post(). 2020-05-14 11:45:52,795:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R2.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 834589, "lab": "/labs/will-greenleaf/", "md5sum": "bcee4e5ea34ce3efa37318e3e2b7a421", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_I2_CTCF_rhos.csv" } 2020-05-14 11:45:53,292:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2'), ('alias', 'md5:bcee4e5ea34ce3efa37318e3e2b7a421')]"} 2020-05-14 11:45:53,292:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2/?format=json&datastore=database 2020-05-14 11:45:53,538:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2' since it already exists with aliases '['will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2']'. 2020-05-14 11:45:53,539:eu_debug: IN post(). 2020-05-14 11:45:53,543:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0_R1.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 828093, "lab": "/labs/will-greenleaf/", "md5sum": "d0dab48384aafce2fb1b8640ebc51c3b", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_K1_CTCF_rhos.csv" } 2020-05-14 11:45:54,008:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:d0dab48384aafce2fb1b8640ebc51c3b'), ('alias', 'will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1')]"} 2020-05-14 11:45:54,008:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1/?format=json&datastore=database 2020-05-14 11:45:54,255:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1']'. 2020-05-14 11:45:54,257:eu_debug: IN post(). 2020-05-14 11:45:54,261:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0_R2.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 834744, "lab": "/labs/will-greenleaf/", "md5sum": "a36e72b9b2d5a207f2da3b5c86032841", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_K2_CTCF_rhos.csv" } 2020-05-14 11:45:54,730:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:a36e72b9b2d5a207f2da3b5c86032841'), ('alias', 'will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2')]"} 2020-05-14 11:45:54,730:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2/?format=json&datastore=database 2020-05-14 11:45:54,974:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2']'. 2020-05-14 11:45:54,974:eu_debug: IN post(). 2020-05-14 11:45:54,981:eu_debug: <<<<<< POST file record will-greenleaf:K562-CRISPRa-tiling-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562-CRISPRa-tiling-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_tiling-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.CRISPRa_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.CRISPRa_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 2058544, "lab": "/labs/will-greenleaf/", "md5sum": "3f8a47c3486440bce53044c1332609fa", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.tiling.T14vsPlasmid_A_R1_Tiling_rhos.csv" } 2020-05-14 11:45:55,501:eu_debug: Success. 2020-05-14 11:45:55,501:eu_debug: IN upload_file() 2020-05-14 11:45:55,501:eu_debug: Attempting to generate new file upload credentials 2020-05-14 11:45:56,023:eu_debug: Success: upload credentials for 'ENCFF930QWQ' regenerated. 2020-05-14 11:45:56,023:eu_debug: >>>>>>GET ENCFF930QWQ From DCC with URL https://www.encodeproject.org/ENCFF930QWQ/?format=json&datastore=database 2020-05-14 11:45:56,259:eu_debug: Running command 'aws s3 cp CRISPR-screen.tiling.T14vsPlasmid_A_R1_Tiling_rhos.csv s3://encode-files/2020/05/14/36b853d2-20a9-489e-81c0-8487c7322f71/ENCFF930QWQ.csv'. 2020-05-14 11:45:58,360:eu_debug: AWS upload successful. 2020-05-14 11:45:58,360:eu_debug: IN post(). 2020-05-14 11:45:58,624:eu_debug: <<<<<< POST file record will-greenleaf:K562-CRISPRa-tiling-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562-CRISPRa-tiling-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_tiling-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.CRISPRa_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.CRISPRa_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 2058551, "lab": "/labs/will-greenleaf/", "md5sum": "ae63bc8ea835ed56ff12dcc372ab12d7", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.tiling.T14vsPlasmid_A_R2_Tiling_rhos.csv" } 2020-05-14 11:45:59,155:eu_debug: Success. 2020-05-14 11:45:59,155:eu_debug: IN upload_file() 2020-05-14 11:45:59,155:eu_debug: Attempting to generate new file upload credentials 2020-05-14 11:45:59,662:eu_debug: Success: upload credentials for 'ENCFF703YMV' regenerated. 2020-05-14 11:45:59,664:eu_debug: >>>>>>GET ENCFF703YMV From DCC with URL https://www.encodeproject.org/ENCFF703YMV/?format=json&datastore=database 2020-05-14 11:45:59,889:eu_debug: Running command 'aws s3 cp CRISPR-screen.tiling.T14vsPlasmid_A_R2_Tiling_rhos.csv s3://encode-files/2020/05/14/ec6df60a-895c-40e7-9593-d88de882787e/ENCFF703YMV.csv'. 2020-05-14 11:46:01,536:eu_debug: AWS upload successful. 2020-05-14 11:46:01,537:eu_debug: IN post(). 2020-05-14 11:46:01,603:eu_debug: <<<<<< POST file record will-greenleaf:K562-CRISPRd-tiling-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562-CRISPRd-tiling-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd-tiling-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.dCas9_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.dCas9_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 2060398, "lab": "/labs/will-greenleaf/", "md5sum": "03fd1cedc9ba7bc47d2ccdb04c6ce065", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.tiling.T14vsPlasmid_D_R1_Tiling_rhos.csv" } 2020-05-14 11:46:01,714:eu_debug: Failed to POST will-greenleaf:K562-CRISPRd-tiling-enrchment-R1 2020-05-14 11:46:01,715:eu_debug: <<<<<< DCC POST RESPONSE: 2020-05-14 11:46:01,715:eu_debug: { "@type": [ "ValidationFailure", "Error" ], "code": 422, "description": "Failed validation", "errors": [ { "description": "'will-greenleaf:K562_CRISPRd-tiling-T14' not found", "location": "body", "name": [ "dataset" ] } ], "status": "error", "title": "Unprocessable Entity" } 2020-05-14 11:46:29,618:eu_debug: Connecting to www.encodeproject.org 2020-05-14 11:46:29,619:eu_debug: submission=False: In non-submission mode. 2020-05-14 11:46:29,908:eu_debug: submission=True: In submission mode. 2020-05-14 11:46:29,920:eu_debug: IN post(). 2020-05-14 11:46:29,932:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20", "derived_from": [ "will-greenleaf:K562_CTCF-FineMap_Plasmid_R1.fastq.gz", "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T1.fastq.gz", "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T2.fastq.gz" ], "file_format": "csv", "file_size": 4279148, "lab": "/labs/will-greenleaf/", "md5sum": "f881e74a629101f8a5f130577c1215d6", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF_FineMap.T20vsPlas_FineMapConv_BR2_CTCF_rhos.csv" } 2020-05-14 11:46:30,414:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:f881e74a629101f8a5f130577c1215d6'), ('alias', 'will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment')]"} 2020-05-14 11:46:30,414:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment/?format=json&datastore=database 2020-05-14 11:46:30,678:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment']'. 2020-05-14 11:46:30,678:eu_debug: IN post(). 2020-05-14 11:46:30,685:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 829301, "lab": "/labs/will-greenleaf/", "md5sum": "516150d5d65799d4d4561f688d19e00d", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_A1_CTCF_rhos.csv" } 2020-05-14 11:46:31,154:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1'), ('alias', 'md5:516150d5d65799d4d4561f688d19e00d')]"} 2020-05-14 11:46:31,155:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1/?format=json&datastore=database 2020-05-14 11:46:31,391:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1' since it already exists with aliases '['will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1']'. 2020-05-14 11:46:31,392:eu_debug: IN post(). 2020-05-14 11:46:31,399:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R2.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 829031, "lab": "/labs/will-greenleaf/", "md5sum": "f9aa5c48d892748cde13d8d3154d5a1d", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_A2_CTCF_rhos.csv" } 2020-05-14 11:46:31,897:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2'), ('alias', 'md5:f9aa5c48d892748cde13d8d3154d5a1d')]"} 2020-05-14 11:46:31,897:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2/?format=json&datastore=database 2020-05-14 11:46:32,131:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2' since it already exists with aliases '['will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2']'. 2020-05-14 11:46:32,132:eu_debug: IN post(). 2020-05-14 11:46:32,136:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 835637, "lab": "/labs/will-greenleaf/", "md5sum": "efa7e27f7ee0a9d9de9420aa72b26b8c", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_D1_CTCF_rhos.csv" } 2020-05-14 11:46:32,602:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:efa7e27f7ee0a9d9de9420aa72b26b8c'), ('alias', 'will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1')]"} 2020-05-14 11:46:32,602:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1/?format=json&datastore=database 2020-05-14 11:46:32,853:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1' since it already exists with aliases '['will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1']'. 2020-05-14 11:46:32,854:eu_debug: IN post(). 2020-05-14 11:46:32,858:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R2.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 835033, "lab": "/labs/will-greenleaf/", "md5sum": "152489e28c52d85aa09cd40f73aa5438", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_D2_CTCF_rhos.csv" } 2020-05-14 11:46:33,326:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2'), ('alias', 'md5:152489e28c52d85aa09cd40f73aa5438')]"} 2020-05-14 11:46:33,326:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2/?format=json&datastore=database 2020-05-14 11:46:33,573:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2' since it already exists with aliases '['will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2']'. 2020-05-14 11:46:33,573:eu_debug: IN post(). 2020-05-14 11:46:33,577:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R1.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 835979, "lab": "/labs/will-greenleaf/", "md5sum": "4e3874987d9458b909a04015237a0433", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_I1_CTCF_rhos.csv" } 2020-05-14 11:46:34,038:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:4e3874987d9458b909a04015237a0433'), ('alias', 'will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1')]"} 2020-05-14 11:46:34,038:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1/?format=json&datastore=database 2020-05-14 11:46:34,277:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1' since it already exists with aliases '['will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1']'. 2020-05-14 11:46:34,277:eu_debug: IN post(). 2020-05-14 11:46:34,285:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R2.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 834589, "lab": "/labs/will-greenleaf/", "md5sum": "bcee4e5ea34ce3efa37318e3e2b7a421", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_I2_CTCF_rhos.csv" } 2020-05-14 11:46:34,737:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:bcee4e5ea34ce3efa37318e3e2b7a421'), ('alias', 'will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2')]"} 2020-05-14 11:46:34,737:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2/?format=json&datastore=database 2020-05-14 11:46:34,990:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2' since it already exists with aliases '['will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2']'. 2020-05-14 11:46:34,991:eu_debug: IN post(). 2020-05-14 11:46:34,998:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0_R1.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 828093, "lab": "/labs/will-greenleaf/", "md5sum": "d0dab48384aafce2fb1b8640ebc51c3b", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_K1_CTCF_rhos.csv" } 2020-05-14 11:46:35,454:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:d0dab48384aafce2fb1b8640ebc51c3b'), ('alias', 'will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1')]"} 2020-05-14 11:46:35,454:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1/?format=json&datastore=database 2020-05-14 11:46:35,701:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1']'. 2020-05-14 11:46:35,703:eu_debug: IN post(). 2020-05-14 11:46:35,707:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0_R2.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 834744, "lab": "/labs/will-greenleaf/", "md5sum": "a36e72b9b2d5a207f2da3b5c86032841", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_K2_CTCF_rhos.csv" } 2020-05-14 11:46:36,157:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2'), ('alias', 'md5:a36e72b9b2d5a207f2da3b5c86032841')]"} 2020-05-14 11:46:36,157:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2/?format=json&datastore=database 2020-05-14 11:46:36,399:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2']'. 2020-05-14 11:46:36,399:eu_debug: IN post(). 2020-05-14 11:46:36,406:eu_debug: <<<<<< POST file record will-greenleaf:K562-CRISPRa-tiling-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562-CRISPRa-tiling-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_tiling-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.CRISPRa_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.CRISPRa_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 2058544, "lab": "/labs/will-greenleaf/", "md5sum": "3f8a47c3486440bce53044c1332609fa", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.tiling.T14vsPlasmid_A_R1_Tiling_rhos.csv" } 2020-05-14 11:46:36,874:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:3f8a47c3486440bce53044c1332609fa'), ('alias', 'will-greenleaf:K562-CRISPRa-tiling-enrchment-R1')]"} 2020-05-14 11:46:36,875:eu_debug: >>>>>>GET will-greenleaf:K562-CRISPRa-tiling-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRa-tiling-enrchment-R1/?format=json&datastore=database 2020-05-14 11:46:37,099:eu_debug: Will not POST 'will-greenleaf:K562-CRISPRa-tiling-enrchment-R1' since it already exists with aliases '['will-greenleaf:K562-CRISPRa-tiling-enrchment-R1']'. 2020-05-14 11:46:37,100:eu_debug: IN post(). 2020-05-14 11:46:37,107:eu_debug: <<<<<< POST file record will-greenleaf:K562-CRISPRa-tiling-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562-CRISPRa-tiling-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_tiling-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.CRISPRa_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.CRISPRa_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 2058551, "lab": "/labs/will-greenleaf/", "md5sum": "ae63bc8ea835ed56ff12dcc372ab12d7", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.tiling.T14vsPlasmid_A_R2_Tiling_rhos.csv" } 2020-05-14 11:46:37,580:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562-CRISPRa-tiling-enrchment-R2'), ('alias', 'md5:ae63bc8ea835ed56ff12dcc372ab12d7')]"} 2020-05-14 11:46:37,580:eu_debug: >>>>>>GET will-greenleaf:K562-CRISPRa-tiling-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRa-tiling-enrchment-R2/?format=json&datastore=database 2020-05-14 11:46:37,811:eu_debug: Will not POST 'will-greenleaf:K562-CRISPRa-tiling-enrchment-R2' since it already exists with aliases '['will-greenleaf:K562-CRISPRa-tiling-enrchment-R2']'. 2020-05-14 11:46:37,812:eu_debug: IN post(). 2020-05-14 11:46:37,819:eu_debug: <<<<<< POST file record will-greenleaf:K562-CRISPRd-tiling-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562-CRISPRd-tiling-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_tiling-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.dCas9_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.dCas9_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 2060398, "lab": "/labs/will-greenleaf/", "md5sum": "03fd1cedc9ba7bc47d2ccdb04c6ce065", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.tiling.T14vsPlasmid_D_R1_Tiling_rhos.csv" } 2020-05-14 11:46:38,309:eu_debug: Success. 2020-05-14 11:46:38,311:eu_debug: IN upload_file() 2020-05-14 11:46:38,312:eu_debug: Attempting to generate new file upload credentials 2020-05-14 11:46:38,836:eu_debug: Success: upload credentials for 'ENCFF401TNY' regenerated. 2020-05-14 11:46:38,836:eu_debug: >>>>>>GET ENCFF401TNY From DCC with URL https://www.encodeproject.org/ENCFF401TNY/?format=json&datastore=database 2020-05-14 11:46:39,073:eu_debug: Running command 'aws s3 cp CRISPR-screen.tiling.T14vsPlasmid_D_R1_Tiling_rhos.csv s3://encode-files/2020/05/14/1422b4ba-19eb-47b0-9081-620fea3f2438/ENCFF401TNY.csv'. 2020-05-14 11:46:40,931:eu_debug: AWS upload successful. 2020-05-14 11:46:40,931:eu_debug: IN post(). 2020-05-14 11:46:41,013:eu_debug: <<<<<< POST file record will-greenleaf:K562-CRISPRd-tiling-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562-CRISPRd-tiling-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_tiling-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.dCas9_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.dCas9_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 2059290, "lab": "/labs/will-greenleaf/", "md5sum": "1fcbdd3e38a4b788a67accd87a257dec", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.tiling.T14vsPlasmid_D_R2_Tiling_rhos.csv" } 2020-05-14 11:46:41,536:eu_debug: Success. 2020-05-14 11:46:41,536:eu_debug: IN upload_file() 2020-05-14 11:46:41,536:eu_debug: Attempting to generate new file upload credentials 2020-05-14 11:46:42,043:eu_debug: Success: upload credentials for 'ENCFF132PXO' regenerated. 2020-05-14 11:46:42,043:eu_debug: >>>>>>GET ENCFF132PXO From DCC with URL https://www.encodeproject.org/ENCFF132PXO/?format=json&datastore=database 2020-05-14 11:46:42,284:eu_debug: Running command 'aws s3 cp CRISPR-screen.tiling.T14vsPlasmid_D_R2_Tiling_rhos.csv s3://encode-files/2020/05/14/cadc9965-26ff-484f-8788-002ebc64a134/ENCFF132PXO.csv'. 2020-05-14 11:46:44,189:eu_debug: AWS upload successful. 2020-05-14 11:46:44,189:eu_debug: IN post(). 2020-05-14 11:46:44,274:eu_debug: <<<<<< POST file record will-greenleaf:K562-CRISPRk-tiling-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562-CRISPRk-tiling-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_tiling-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.CRKO_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.CRKO_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 2060008, "lab": "/labs/will-greenleaf/", "md5sum": "25095f5a5c3ccca0995b84ef18fbbdb2", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.tiling.T14vsPlasmid_I_R1_Tiling_rhos.csv" } 2020-05-14 11:46:44,789:eu_debug: Success. 2020-05-14 11:46:44,789:eu_debug: IN upload_file() 2020-05-14 11:46:44,789:eu_debug: Attempting to generate new file upload credentials 2020-05-14 11:46:45,289:eu_debug: Success: upload credentials for 'ENCFF572NFH' regenerated. 2020-05-14 11:46:45,291:eu_debug: >>>>>>GET ENCFF572NFH From DCC with URL https://www.encodeproject.org/ENCFF572NFH/?format=json&datastore=database 2020-05-14 11:46:45,535:eu_debug: Running command 'aws s3 cp CRISPR-screen.tiling.T14vsPlasmid_I_R1_Tiling_rhos.csv s3://encode-files/2020/05/14/871dd58a-8a17-4749-aa80-45896657f797/ENCFF572NFH.csv'. 2020-05-14 11:46:47,428:eu_debug: AWS upload successful. 2020-05-14 11:46:47,429:eu_debug: IN post(). 2020-05-14 11:46:47,504:eu_debug: <<<<<< POST file record will-greenleaf:K562-CRISPRk-tiling-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562-CRISPRk-tiling-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_tiling-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.CRKO_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.CRKO_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 2060452, "lab": "/labs/will-greenleaf/", "md5sum": "fd7a88d91e0f8af14a0a79ba48a4c6f8", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.tiling.T14vsPlasmid_I_R2_Tiling_rhos.csv" } 2020-05-14 11:46:47,988:eu_debug: Success. 2020-05-14 11:46:47,989:eu_debug: IN upload_file() 2020-05-14 11:46:47,989:eu_debug: Attempting to generate new file upload credentials 2020-05-14 11:46:48,505:eu_debug: Success: upload credentials for 'ENCFF745DQE' regenerated. 2020-05-14 11:46:48,505:eu_debug: >>>>>>GET ENCFF745DQE From DCC with URL https://www.encodeproject.org/ENCFF745DQE/?format=json&datastore=database 2020-05-14 11:46:48,751:eu_debug: Running command 'aws s3 cp CRISPR-screen.tiling.T14vsPlasmid_I_R2_Tiling_rhos.csv s3://encode-files/2020/05/14/aabbc406-ed78-4f11-a37a-6b78cd4e5cb6/ENCFF745DQE.csv'. 2020-05-14 11:46:51,525:eu_debug: AWS upload successful. 2020-05-14 11:46:51,526:eu_debug: IN post(). 2020-05-14 11:46:51,746:eu_debug: <<<<<< POST file record will-greenleaf:K562-CRISPRi-tiling-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562-CRISPRi-tiling-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_tiling-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.CRISPRi_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.CRISPRi_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 2060083, "lab": "/labs/will-greenleaf/", "md5sum": "42ccdfba17c0787c890caeaa2ce7841c", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.tiling.T14vsPlasmid_K_R1_Tiling_rhos.csv" } 2020-05-14 11:46:52,271:eu_debug: Success. 2020-05-14 11:46:52,275:eu_debug: IN upload_file() 2020-05-14 11:46:52,275:eu_debug: Attempting to generate new file upload credentials 2020-05-14 11:46:52,795:eu_debug: Success: upload credentials for 'ENCFF722GPI' regenerated. 2020-05-14 11:46:52,795:eu_debug: >>>>>>GET ENCFF722GPI From DCC with URL https://www.encodeproject.org/ENCFF722GPI/?format=json&datastore=database 2020-05-14 11:46:53,028:eu_debug: Running command 'aws s3 cp CRISPR-screen.tiling.T14vsPlasmid_K_R1_Tiling_rhos.csv s3://encode-files/2020/05/14/b45c2502-b8b3-4b9f-9fb0-1d86efa5acc6/ENCFF722GPI.csv'. 2020-05-14 11:46:54,832:eu_debug: AWS upload successful. 2020-05-14 11:46:54,833:eu_debug: IN post(). 2020-05-14 11:46:54,916:eu_debug: <<<<<< POST file record will-greenleaf:K562-CRISPRi-tiling-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562-CRISPRi-tiling-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_tiling-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.CRISPRi_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.CRISPRi_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 2060126, "lab": "/labs/will-greenleaf/", "md5sum": "ab13517df30f98218c7d6595bf423a53", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.tiling.T14vsPlasmid_K_R2_Tiling_rhos.csv" } 2020-05-14 11:46:55,437:eu_debug: Success. 2020-05-14 11:46:55,438:eu_debug: IN upload_file() 2020-05-14 11:46:55,438:eu_debug: Attempting to generate new file upload credentials 2020-05-14 11:46:55,959:eu_debug: Success: upload credentials for 'ENCFF725EHD' regenerated. 2020-05-14 11:46:55,959:eu_debug: >>>>>>GET ENCFF725EHD From DCC with URL https://www.encodeproject.org/ENCFF725EHD/?format=json&datastore=database 2020-05-14 11:46:56,196:eu_debug: Running command 'aws s3 cp CRISPR-screen.tiling.T14vsPlasmid_K_R2_Tiling_rhos.csv s3://encode-files/2020/05/14/a5935a62-1bcd-4d51-906a-806e0263bf27/ENCFF725EHD.csv'. 2020-05-14 11:46:57,895:eu_debug: AWS upload successful. 2020-05-19 14:04:28,278:eu_debug: Connecting to www.encodeproject.org 2020-05-19 14:04:28,282:eu_debug: submission=False: In non-submission mode. 2020-05-19 14:04:28,613:eu_debug: submission=True: In submission mode. 2020-05-19 14:04:28,622:eu_debug: IN post(). 2020-05-19 14:04:28,732:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20", "derived_from": [ "will-greenleaf:K562_CTCF-FineMap_Plasmid_R1.fastq.gz", "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T1.fastq.gz", "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T2.fastq.gz" ], "file_format": "csv", "file_size": 4279148, "lab": "/labs/will-greenleaf/", "md5sum": "f881e74a629101f8a5f130577c1215d6", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF_FineMap.T20vsPlas_FineMapConv_BR2_CTCF_rhos.csv" } 2020-05-19 14:04:29,241:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment'), ('alias', 'md5:f881e74a629101f8a5f130577c1215d6')]"} 2020-05-19 14:04:29,241:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment/?format=json&datastore=database 2020-05-19 14:04:29,504:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment']'. 2020-05-19 14:04:29,504:eu_debug: IN post(). 2020-05-19 14:04:29,549:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 829301, "lab": "/labs/will-greenleaf/", "md5sum": "516150d5d65799d4d4561f688d19e00d", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_A1_CTCF_rhos.csv" } 2020-05-19 14:04:30,043:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:516150d5d65799d4d4561f688d19e00d'), ('alias', 'will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1')]"} 2020-05-19 14:04:30,043:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1/?format=json&datastore=database 2020-05-19 14:04:30,283:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1' since it already exists with aliases '['will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1']'. 2020-05-19 14:04:30,283:eu_debug: IN post(). 2020-05-19 14:04:30,334:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R2.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 829031, "lab": "/labs/will-greenleaf/", "md5sum": "f9aa5c48d892748cde13d8d3154d5a1d", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_A2_CTCF_rhos.csv" } 2020-05-19 14:04:30,811:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2'), ('alias', 'md5:f9aa5c48d892748cde13d8d3154d5a1d')]"} 2020-05-19 14:04:30,812:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2/?format=json&datastore=database 2020-05-19 14:04:31,066:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2' since it already exists with aliases '['will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2']'. 2020-05-19 14:04:31,067:eu_debug: IN post(). 2020-05-19 14:04:31,153:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0_R1.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 835637, "lab": "/labs/will-greenleaf/", "md5sum": "efa7e27f7ee0a9d9de9420aa72b26b8c", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_D1_CTCF_rhos.csv" } 2020-05-19 14:04:31,635:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:efa7e27f7ee0a9d9de9420aa72b26b8c'), ('alias', 'will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1')]"} 2020-05-19 14:04:31,635:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1/?format=json&datastore=database 2020-05-19 14:04:31,888:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1' since it already exists with aliases '['will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1']'. 2020-05-19 14:04:31,888:eu_debug: IN post(). 2020-05-19 14:04:31,936:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0_R2.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 835033, "lab": "/labs/will-greenleaf/", "md5sum": "152489e28c52d85aa09cd40f73aa5438", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_D2_CTCF_rhos.csv" } 2020-05-19 14:04:32,410:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2'), ('alias', 'md5:152489e28c52d85aa09cd40f73aa5438')]"} 2020-05-19 14:04:32,410:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2/?format=json&datastore=database 2020-05-19 14:04:32,658:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2' since it already exists with aliases '['will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2']'. 2020-05-19 14:04:32,659:eu_debug: IN post(). 2020-05-19 14:04:32,710:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 835979, "lab": "/labs/will-greenleaf/", "md5sum": "4e3874987d9458b909a04015237a0433", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_I1_CTCF_rhos.csv" } 2020-05-19 14:04:33,180:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1'), ('alias', 'md5:4e3874987d9458b909a04015237a0433')]"} 2020-05-19 14:04:33,181:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1/?format=json&datastore=database 2020-05-19 14:04:33,425:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1' since it already exists with aliases '['will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1']'. 2020-05-19 14:04:33,425:eu_debug: IN post(). 2020-05-19 14:04:33,474:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R2.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 834589, "lab": "/labs/will-greenleaf/", "md5sum": "bcee4e5ea34ce3efa37318e3e2b7a421", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_I2_CTCF_rhos.csv" } 2020-05-19 14:04:33,960:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:bcee4e5ea34ce3efa37318e3e2b7a421'), ('alias', 'will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2')]"} 2020-05-19 14:04:33,960:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2/?format=json&datastore=database 2020-05-19 14:04:34,206:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2' since it already exists with aliases '['will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2']'. 2020-05-19 14:04:34,206:eu_debug: IN post(). 2020-05-19 14:04:34,252:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R1.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 828093, "lab": "/labs/will-greenleaf/", "md5sum": "d0dab48384aafce2fb1b8640ebc51c3b", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_K1_CTCF_rhos.csv" } 2020-05-19 14:04:34,691:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1'), ('alias', 'md5:d0dab48384aafce2fb1b8640ebc51c3b')]"} 2020-05-19 14:04:34,691:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1/?format=json&datastore=database 2020-05-19 14:04:34,929:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1']'. 2020-05-19 14:04:34,930:eu_debug: IN post(). 2020-05-19 14:04:34,984:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R2.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 834744, "lab": "/labs/will-greenleaf/", "md5sum": "a36e72b9b2d5a207f2da3b5c86032841", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_K2_CTCF_rhos.csv" } 2020-05-19 14:04:35,452:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:a36e72b9b2d5a207f2da3b5c86032841'), ('alias', 'will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2')]"} 2020-05-19 14:04:35,452:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2/?format=json&datastore=database 2020-05-19 14:04:35,688:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2']'. 2020-05-19 14:04:35,689:eu_debug: IN post(). 2020-05-19 14:04:35,745:eu_debug: <<<<<< POST file record will-greenleaf:K562-CRISPRa-tiling-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562-CRISPRa-tiling-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_tiling-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.CRISPRa_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.CRISPRa_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 2058544, "lab": "/labs/will-greenleaf/", "md5sum": "3f8a47c3486440bce53044c1332609fa", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.tiling.T14vsPlasmid_A_R1_Tiling_rhos.csv" } 2020-05-19 14:04:36,218:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562-CRISPRa-tiling-enrchment-R1'), ('alias', 'md5:3f8a47c3486440bce53044c1332609fa')]"} 2020-05-19 14:04:36,218:eu_debug: >>>>>>GET will-greenleaf:K562-CRISPRa-tiling-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRa-tiling-enrchment-R1/?format=json&datastore=database 2020-05-19 14:04:36,447:eu_debug: Will not POST 'will-greenleaf:K562-CRISPRa-tiling-enrchment-R1' since it already exists with aliases '['will-greenleaf:K562-CRISPRa-tiling-enrchment-R1']'. 2020-05-19 14:04:36,447:eu_debug: IN post(). 2020-05-19 14:04:36,513:eu_debug: <<<<<< POST file record will-greenleaf:K562-CRISPRa-tiling-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562-CRISPRa-tiling-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_tiling-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.CRISPRa_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.CRISPRa_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 2058551, "lab": "/labs/will-greenleaf/", "md5sum": "ae63bc8ea835ed56ff12dcc372ab12d7", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.tiling.T14vsPlasmid_A_R2_Tiling_rhos.csv" } 2020-05-19 14:04:36,999:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562-CRISPRa-tiling-enrchment-R2'), ('alias', 'md5:ae63bc8ea835ed56ff12dcc372ab12d7')]"} 2020-05-19 14:04:36,999:eu_debug: >>>>>>GET will-greenleaf:K562-CRISPRa-tiling-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRa-tiling-enrchment-R2/?format=json&datastore=database 2020-05-19 14:04:37,240:eu_debug: Will not POST 'will-greenleaf:K562-CRISPRa-tiling-enrchment-R2' since it already exists with aliases '['will-greenleaf:K562-CRISPRa-tiling-enrchment-R2']'. 2020-05-19 14:04:37,240:eu_debug: IN post(). 2020-05-19 14:04:37,312:eu_debug: <<<<<< POST file record will-greenleaf:K562-CRISPRd-tiling-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562-CRISPRd-tiling-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_tiling-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.dCas9_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.dCas9_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 2060398, "lab": "/labs/will-greenleaf/", "md5sum": "03fd1cedc9ba7bc47d2ccdb04c6ce065", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.tiling.T14vsPlasmid_D_R1_Tiling_rhos.csv" } 2020-05-19 14:04:37,765:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:03fd1cedc9ba7bc47d2ccdb04c6ce065'), ('alias', 'will-greenleaf:K562-CRISPRd-tiling-enrchment-R1')]"} 2020-05-19 14:04:37,765:eu_debug: >>>>>>GET will-greenleaf:K562-CRISPRd-tiling-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRd-tiling-enrchment-R1/?format=json&datastore=database 2020-05-19 14:04:38,004:eu_debug: Will not POST 'will-greenleaf:K562-CRISPRd-tiling-enrchment-R1' since it already exists with aliases '['will-greenleaf:K562-CRISPRd-tiling-enrchment-R1']'. 2020-05-19 14:04:38,004:eu_debug: IN post(). 2020-05-19 14:04:38,061:eu_debug: <<<<<< POST file record will-greenleaf:K562-CRISPRd-tiling-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562-CRISPRd-tiling-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_tiling-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.dCas9_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.dCas9_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 2059290, "lab": "/labs/will-greenleaf/", "md5sum": "1fcbdd3e38a4b788a67accd87a257dec", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.tiling.T14vsPlasmid_D_R2_Tiling_rhos.csv" } 2020-05-19 14:04:38,525:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562-CRISPRd-tiling-enrchment-R2'), ('alias', 'md5:1fcbdd3e38a4b788a67accd87a257dec')]"} 2020-05-19 14:04:38,525:eu_debug: >>>>>>GET will-greenleaf:K562-CRISPRd-tiling-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRd-tiling-enrchment-R2/?format=json&datastore=database 2020-05-19 14:04:38,756:eu_debug: Will not POST 'will-greenleaf:K562-CRISPRd-tiling-enrchment-R2' since it already exists with aliases '['will-greenleaf:K562-CRISPRd-tiling-enrchment-R2']'. 2020-05-19 14:04:38,756:eu_debug: IN post(). 2020-05-19 14:04:38,831:eu_debug: <<<<<< POST file record will-greenleaf:K562-CRISPRi-tiling-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562-CRISPRi-tiling-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_tiling-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.CRISPRi_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.CRISPRi_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 2060008, "lab": "/labs/will-greenleaf/", "md5sum": "25095f5a5c3ccca0995b84ef18fbbdb2", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.tiling.T14vsPlasmid_I_R1_Tiling_rhos.csv" } 2020-05-19 14:04:39,268:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562-CRISPRi-tiling-enrchment-R1'), ('alias', 'md5:25095f5a5c3ccca0995b84ef18fbbdb2')]"} 2020-05-19 14:04:39,268:eu_debug: >>>>>>GET will-greenleaf:K562-CRISPRi-tiling-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRi-tiling-enrchment-R1/?format=json&datastore=database 2020-05-19 14:04:39,542:eu_debug: Will not POST 'will-greenleaf:K562-CRISPRi-tiling-enrchment-R1' since it already exists with aliases '['will-greenleaf:K562-CRISPRi-tiling-enrchment-R1']'. 2020-05-19 14:04:39,542:eu_debug: IN post(). 2020-05-19 14:04:39,598:eu_debug: <<<<<< POST file record will-greenleaf:K562-CRISPRi-tiling-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562-CRISPRi-tiling-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_tiling-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.CRISPRi_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.CRISPRi_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 2060452, "lab": "/labs/will-greenleaf/", "md5sum": "fd7a88d91e0f8af14a0a79ba48a4c6f8", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.tiling.T14vsPlasmid_I_R2_Tiling_rhos.csv" } 2020-05-19 14:04:40,072:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562-CRISPRi-tiling-enrchment-R2'), ('alias', 'md5:fd7a88d91e0f8af14a0a79ba48a4c6f8')]"} 2020-05-19 14:04:40,072:eu_debug: >>>>>>GET will-greenleaf:K562-CRISPRi-tiling-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRi-tiling-enrchment-R2/?format=json&datastore=database 2020-05-19 14:04:40,312:eu_debug: Will not POST 'will-greenleaf:K562-CRISPRi-tiling-enrchment-R2' since it already exists with aliases '['will-greenleaf:K562-CRISPRi-tiling-enrchment-R2']'. 2020-05-19 14:04:40,313:eu_debug: IN post(). 2020-05-19 14:04:40,391:eu_debug: <<<<<< POST file record will-greenleaf:K562-CRISPRk-tiling-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562-CRISPRk-tiling-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_tiling-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.CRKO_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.CRKO_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 2060083, "lab": "/labs/will-greenleaf/", "md5sum": "42ccdfba17c0787c890caeaa2ce7841c", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.tiling.T14vsPlasmid_K_R1_Tiling_rhos.csv" } 2020-05-19 14:04:40,883:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562-CRISPRk-tiling-enrchment-R1'), ('alias', 'md5:42ccdfba17c0787c890caeaa2ce7841c')]"} 2020-05-19 14:04:40,883:eu_debug: >>>>>>GET will-greenleaf:K562-CRISPRk-tiling-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRk-tiling-enrchment-R1/?format=json&datastore=database 2020-05-19 14:04:41,129:eu_debug: Will not POST 'will-greenleaf:K562-CRISPRk-tiling-enrchment-R1' since it already exists with aliases '['will-greenleaf:K562-CRISPRk-tiling-enrchment-R1']'. 2020-05-19 14:04:41,129:eu_debug: IN post(). 2020-05-19 14:04:41,210:eu_debug: <<<<<< POST file record will-greenleaf:K562-CRISPRk-tiling-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562-CRISPRk-tiling-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_tiling-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.CRKO_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.CRKO_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 2060126, "lab": "/labs/will-greenleaf/", "md5sum": "ab13517df30f98218c7d6595bf423a53", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.tiling.T14vsPlasmid_K_R2_Tiling_rhos.csv" } 2020-05-19 14:04:41,687:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562-CRISPRk-tiling-enrchment-R2'), ('alias', 'md5:ab13517df30f98218c7d6595bf423a53')]"} 2020-05-19 14:04:41,688:eu_debug: >>>>>>GET will-greenleaf:K562-CRISPRk-tiling-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRk-tiling-enrchment-R2/?format=json&datastore=database 2020-05-19 14:04:41,920:eu_debug: Will not POST 'will-greenleaf:K562-CRISPRk-tiling-enrchment-R2' since it already exists with aliases '['will-greenleaf:K562-CRISPRk-tiling-enrchment-R2']'. 2020-05-19 14:05:11,722:eu_debug: Connecting to www.encodeproject.org 2020-05-19 14:05:11,723:eu_debug: submission=False: In non-submission mode. 2020-05-19 14:05:11,991:eu_debug: submission=True: In submission mode. 2020-05-25 03:27:18,782:eu_debug: Connecting to www.encodeproject.org 2020-05-25 03:27:18,790:eu_debug: submission=False: In non-submission mode. 2020-05-25 03:27:19,138:eu_debug: submission=True: In submission mode. 2020-05-25 03:27:19,152:eu_debug: IN patch() 2020-05-25 03:27:19,152:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_tiling_screen_T0-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_tiling_screen_T0-R1/?format=json&datastore=database&frame=edit 2020-05-25 03:27:19,271:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRa_tiling_screen_T0-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_tiling_screen_T0-R1 and this payload: { "genetic_modifications": [ "will-greenleaf:activation" ], "post_nucleic_acid_delivery_time": 0, "post_nucleic_acid_delivery_time_units": "day" } 2020-05-25 03:27:19,393:eu_debug: Failed to PATCH will-greenleaf:K562_CRISPRa_tiling_screen_T0-R1 2020-05-25 03:27:19,393:eu_debug: <<<<<< DCC PATCH RESPONSE: 2020-05-25 03:27:19,393:eu_debug: { "@type": [ "ValidationFailure", "Error" ], "code": 422, "description": "Failed validation", "errors": [ { "description": "'will-greenleaf:activation' not found", "location": "body", "name": [ "genetic_modifications", 0 ] } ], "status": "error", "title": "Unprocessable Entity" } 2020-05-25 03:28:15,803:eu_debug: Connecting to www.encodeproject.org 2020-05-25 03:28:15,804:eu_debug: submission=False: In non-submission mode. 2020-05-25 03:28:16,114:eu_debug: submission=True: In submission mode. 2020-05-25 03:28:16,122:eu_debug: IN patch() 2020-05-25 03:28:16,122:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_tiling_screen_T0-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_tiling_screen_T0-R1/?format=json&datastore=database&frame=edit 2020-05-25 03:28:16,224:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRa_tiling_screen_T0-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_tiling_screen_T0-R1 and this payload: { "post_nucleic_acid_delivery_time": 0, "post_nucleic_acid_delivery_time_units": "day" } 2020-05-25 03:28:16,497:eu_debug: Success. 2020-05-25 03:28:16,497:eu_debug: IN patch() 2020-05-25 03:28:16,498:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_tiling_screen_T0-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_tiling_screen_T0-R1/?format=json&datastore=database&frame=edit 2020-05-25 03:28:16,600:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRi_tiling_screen_T0-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_tiling_screen_T0-R1 and this payload: { "post_nucleic_acid_delivery_time": 0, "post_nucleic_acid_delivery_time_units": "day" } 2020-05-25 03:28:16,836:eu_debug: Success. 2020-05-25 03:28:16,837:eu_debug: IN patch() 2020-05-25 03:28:16,837:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_tiling_screen_T0-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_tiling_screen_T0-R1/?format=json&datastore=database&frame=edit 2020-05-25 03:28:16,935:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRk_tiling_screen_T0-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_tiling_screen_T0-R1 and this payload: { "post_nucleic_acid_delivery_time": 0, "post_nucleic_acid_delivery_time_units": "day" } 2020-05-25 03:28:17,177:eu_debug: Success. 2020-05-25 03:28:17,178:eu_debug: IN patch() 2020-05-25 03:28:17,178:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_tiling_screen_T14-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_tiling_screen_T14-R1/?format=json&datastore=database&frame=edit 2020-05-25 03:28:17,272:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRa_tiling_screen_T14-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_tiling_screen_T14-R1 and this payload: { "post_nucleic_acid_delivery_time": 14, "post_nucleic_acid_delivery_time_units": "day" } 2020-05-25 03:28:17,770:eu_debug: Success. 2020-05-25 03:28:17,771:eu_debug: IN patch() 2020-05-25 03:28:17,771:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_tiling_screen_T14-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_tiling_screen_T14-R1/?format=json&datastore=database&frame=edit 2020-05-25 03:28:17,891:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRi_tiling_screen_T14-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_tiling_screen_T14-R1 and this payload: { "post_nucleic_acid_delivery_time": 14, "post_nucleic_acid_delivery_time_units": "day" } 2020-05-25 03:28:18,424:eu_debug: Success. 2020-05-25 03:28:18,425:eu_debug: IN patch() 2020-05-25 03:28:18,425:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_tiling_screen_T14-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_tiling_screen_T14-R1/?format=json&datastore=database&frame=edit 2020-05-25 03:28:18,528:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRk_tiling_screen_T14-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_tiling_screen_T14-R1 and this payload: { "post_nucleic_acid_delivery_time": 14, "post_nucleic_acid_delivery_time_units": "day" } 2020-05-25 03:28:18,779:eu_debug: Success. 2020-05-25 03:28:18,779:eu_debug: IN patch() 2020-05-25 03:28:18,780:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_tiling_screen_T14-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_tiling_screen_T14-R2/?format=json&datastore=database&frame=edit 2020-05-25 03:28:18,880:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRa_tiling_screen_T14-R2 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_tiling_screen_T14-R2 and this payload: { "post_nucleic_acid_delivery_time": 14, "post_nucleic_acid_delivery_time_units": "day" } 2020-05-25 03:28:19,133:eu_debug: Success. 2020-05-25 03:28:19,133:eu_debug: IN patch() 2020-05-25 03:28:19,134:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_tiling_screen_T14-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_tiling_screen_T14-R2/?format=json&datastore=database&frame=edit 2020-05-25 03:28:19,236:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRi_tiling_screen_T14-R2 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_tiling_screen_T14-R2 and this payload: { "post_nucleic_acid_delivery_time": 14, "post_nucleic_acid_delivery_time_units": "day" } 2020-05-25 03:28:19,484:eu_debug: Success. 2020-05-25 03:28:19,485:eu_debug: IN patch() 2020-05-25 03:28:19,485:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_tiling_screen_T14-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_tiling_screen_T14-R2/?format=json&datastore=database&frame=edit 2020-05-25 03:28:19,586:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRk_tiling_screen_T14-R2 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_tiling_screen_T14-R2 and this payload: { "post_nucleic_acid_delivery_time": 14, "post_nucleic_acid_delivery_time_units": "day" } 2020-05-25 03:28:19,827:eu_debug: Success. 2020-05-25 03:29:00,141:eu_debug: Connecting to www.encodeproject.org 2020-05-25 03:29:00,142:eu_debug: submission=False: In non-submission mode. 2020-05-25 03:29:00,450:eu_debug: submission=True: In submission mode. 2020-05-25 03:29:00,458:eu_debug: IN patch() 2020-05-25 03:29:00,459:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_tiling_screen_T0-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_tiling_screen_T0-R1/?format=json&datastore=database&frame=edit 2020-05-25 03:29:00,564:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRd_tiling_screen_T0-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_tiling_screen_T0-R1 and this payload: { "post_nucleic_acid_delivery_time": 0, "post_nucleic_acid_delivery_time_units": "day" } 2020-05-25 03:29:00,808:eu_debug: Success. 2020-05-25 03:29:00,809:eu_debug: IN patch() 2020-05-25 03:29:00,809:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_tiling_screen_T14-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_tiling_screen_T14-R1/?format=json&datastore=database&frame=edit 2020-05-25 03:29:00,912:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRd_tiling_screen_T14-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_tiling_screen_T14-R1 and this payload: { "post_nucleic_acid_delivery_time": 14, "post_nucleic_acid_delivery_time_units": "day" } 2020-05-25 03:29:01,149:eu_debug: Success. 2020-05-25 03:29:01,150:eu_debug: IN patch() 2020-05-25 03:29:01,150:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_tiling_screen_T14-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_tiling_screen_T14-R2/?format=json&datastore=database&frame=edit 2020-05-25 03:29:01,253:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRd_tiling_screen_T14-R2 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_tiling_screen_T14-R2 and this payload: { "post_nucleic_acid_delivery_time": 14, "post_nucleic_acid_delivery_time_units": "day" } 2020-05-25 03:29:01,503:eu_debug: Success. 2020-05-25 03:29:38,380:eu_debug: Connecting to www.encodeproject.org 2020-05-25 03:29:38,382:eu_debug: submission=False: In non-submission mode. 2020-05-25 03:29:38,744:eu_debug: submission=True: In submission mode. 2020-05-25 03:29:38,752:eu_debug: IN post(). 2020-05-25 03:29:38,875:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20", "derived_from": [ "will-greenleaf:K562_CTCF-FineMap_Plasmid_R1.fastq.gz", "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T1.fastq.gz", "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T2.fastq.gz" ], "file_format": "csv", "file_size": 4279148, "lab": "/labs/will-greenleaf/", "md5sum": "f881e74a629101f8a5f130577c1215d6", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF_FineMap.T20vsPlas_FineMapConv_BR2_CTCF_rhos.csv" } 2020-05-25 03:29:39,361:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:f881e74a629101f8a5f130577c1215d6'), ('alias', 'will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment')]"} 2020-05-25 03:29:39,362:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment/?format=json&datastore=database 2020-05-25 03:29:39,635:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment']'. 2020-05-25 03:29:39,635:eu_debug: IN post(). 2020-05-25 03:29:39,688:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 829301, "lab": "/labs/will-greenleaf/", "md5sum": "516150d5d65799d4d4561f688d19e00d", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_A1_CTCF_rhos.csv" } 2020-05-25 03:29:40,179:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:516150d5d65799d4d4561f688d19e00d'), ('alias', 'will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1')]"} 2020-05-25 03:29:40,179:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1/?format=json&datastore=database 2020-05-25 03:29:40,420:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1' since it already exists with aliases '['will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1']'. 2020-05-25 03:29:40,421:eu_debug: IN post(). 2020-05-25 03:29:40,489:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R2.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 829031, "lab": "/labs/will-greenleaf/", "md5sum": "f9aa5c48d892748cde13d8d3154d5a1d", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_A2_CTCF_rhos.csv" } 2020-05-25 03:29:40,948:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:f9aa5c48d892748cde13d8d3154d5a1d'), ('alias', 'will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2')]"} 2020-05-25 03:29:40,949:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2/?format=json&datastore=database 2020-05-25 03:29:41,187:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2' since it already exists with aliases '['will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2']'. 2020-05-25 03:29:41,188:eu_debug: IN post(). 2020-05-25 03:29:41,239:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0_R1.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 835637, "lab": "/labs/will-greenleaf/", "md5sum": "efa7e27f7ee0a9d9de9420aa72b26b8c", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_D1_CTCF_rhos.csv" } 2020-05-25 03:29:41,727:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:efa7e27f7ee0a9d9de9420aa72b26b8c'), ('alias', 'will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1')]"} 2020-05-25 03:29:41,727:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1/?format=json&datastore=database 2020-05-25 03:29:41,976:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1' since it already exists with aliases '['will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1']'. 2020-05-25 03:29:41,976:eu_debug: IN post(). 2020-05-25 03:29:42,049:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0_R2.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 835033, "lab": "/labs/will-greenleaf/", "md5sum": "152489e28c52d85aa09cd40f73aa5438", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_D2_CTCF_rhos.csv" } 2020-05-25 03:29:42,527:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2'), ('alias', 'md5:152489e28c52d85aa09cd40f73aa5438')]"} 2020-05-25 03:29:42,528:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2/?format=json&datastore=database 2020-05-25 03:29:42,778:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2' since it already exists with aliases '['will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2']'. 2020-05-25 03:29:42,778:eu_debug: IN post(). 2020-05-25 03:29:42,828:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 835979, "lab": "/labs/will-greenleaf/", "md5sum": "4e3874987d9458b909a04015237a0433", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_I1_CTCF_rhos.csv" } 2020-05-25 03:29:43,278:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1'), ('alias', 'md5:4e3874987d9458b909a04015237a0433')]"} 2020-05-25 03:29:43,279:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1/?format=json&datastore=database 2020-05-25 03:29:43,525:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1' since it already exists with aliases '['will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1']'. 2020-05-25 03:29:43,525:eu_debug: IN post(). 2020-05-25 03:29:43,580:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R2.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 834589, "lab": "/labs/will-greenleaf/", "md5sum": "bcee4e5ea34ce3efa37318e3e2b7a421", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_I2_CTCF_rhos.csv" } 2020-05-25 03:29:44,038:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:bcee4e5ea34ce3efa37318e3e2b7a421'), ('alias', 'will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2')]"} 2020-05-25 03:29:44,038:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2/?format=json&datastore=database 2020-05-25 03:29:44,284:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2' since it already exists with aliases '['will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2']'. 2020-05-25 03:29:44,285:eu_debug: IN post(). 2020-05-25 03:29:44,342:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R1.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 828093, "lab": "/labs/will-greenleaf/", "md5sum": "d0dab48384aafce2fb1b8640ebc51c3b", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_K1_CTCF_rhos.csv" } 2020-05-25 03:29:44,825:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1'), ('alias', 'md5:d0dab48384aafce2fb1b8640ebc51c3b')]"} 2020-05-25 03:29:44,826:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1/?format=json&datastore=database 2020-05-25 03:29:45,074:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1']'. 2020-05-25 03:29:45,075:eu_debug: IN post(). 2020-05-25 03:29:45,145:eu_debug: <<<<<< POST file record will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R2.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 834744, "lab": "/labs/will-greenleaf/", "md5sum": "a36e72b9b2d5a207f2da3b5c86032841", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.CTCF.growth_screen.T14vsPlasmid_K2_CTCF_rhos.csv" } 2020-05-25 03:29:45,627:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:a36e72b9b2d5a207f2da3b5c86032841'), ('alias', 'will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2')]"} 2020-05-25 03:29:45,627:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2/?format=json&datastore=database 2020-05-25 03:29:45,864:eu_debug: Will not POST 'will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2' since it already exists with aliases '['will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2']'. 2020-05-25 03:29:45,865:eu_debug: IN post(). 2020-05-25 03:29:45,956:eu_debug: <<<<<< POST file record will-greenleaf:K562-CRISPRa-tiling-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562-CRISPRa-tiling-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_tiling-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.CRISPRa_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.CRISPRa_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 2058544, "lab": "/labs/will-greenleaf/", "md5sum": "3f8a47c3486440bce53044c1332609fa", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.tiling.T14vsPlasmid_A_R1_Tiling_rhos.csv" } 2020-05-25 03:29:46,412:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562-CRISPRa-tiling-enrchment-R1'), ('alias', 'md5:3f8a47c3486440bce53044c1332609fa')]"} 2020-05-25 03:29:46,412:eu_debug: >>>>>>GET will-greenleaf:K562-CRISPRa-tiling-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRa-tiling-enrchment-R1/?format=json&datastore=database 2020-05-25 03:29:46,655:eu_debug: Will not POST 'will-greenleaf:K562-CRISPRa-tiling-enrchment-R1' since it already exists with aliases '['will-greenleaf:K562-CRISPRa-tiling-enrchment-R1']'. 2020-05-25 03:29:46,655:eu_debug: IN post(). 2020-05-25 03:29:46,769:eu_debug: <<<<<< POST file record will-greenleaf:K562-CRISPRa-tiling-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562-CRISPRa-tiling-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRa_tiling-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.CRISPRa_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.CRISPRa_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 2058551, "lab": "/labs/will-greenleaf/", "md5sum": "ae63bc8ea835ed56ff12dcc372ab12d7", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.tiling.T14vsPlasmid_A_R2_Tiling_rhos.csv" } 2020-05-25 03:29:47,259:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:ae63bc8ea835ed56ff12dcc372ab12d7'), ('alias', 'will-greenleaf:K562-CRISPRa-tiling-enrchment-R2')]"} 2020-05-25 03:29:47,259:eu_debug: >>>>>>GET will-greenleaf:K562-CRISPRa-tiling-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRa-tiling-enrchment-R2/?format=json&datastore=database 2020-05-25 03:29:47,504:eu_debug: Will not POST 'will-greenleaf:K562-CRISPRa-tiling-enrchment-R2' since it already exists with aliases '['will-greenleaf:K562-CRISPRa-tiling-enrchment-R2']'. 2020-05-25 03:29:47,505:eu_debug: IN post(). 2020-05-25 03:29:47,768:eu_debug: <<<<<< POST file record will-greenleaf:K562-CRISPRd-tiling-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562-CRISPRd-tiling-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_tiling-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.dCas9_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.dCas9_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 2060398, "lab": "/labs/will-greenleaf/", "md5sum": "03fd1cedc9ba7bc47d2ccdb04c6ce065", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.tiling.T14vsPlasmid_D_R1_Tiling_rhos.csv" } 2020-05-25 03:29:48,260:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:03fd1cedc9ba7bc47d2ccdb04c6ce065'), ('alias', 'will-greenleaf:K562-CRISPRd-tiling-enrchment-R1')]"} 2020-05-25 03:29:48,261:eu_debug: >>>>>>GET will-greenleaf:K562-CRISPRd-tiling-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRd-tiling-enrchment-R1/?format=json&datastore=database 2020-05-25 03:29:48,500:eu_debug: Will not POST 'will-greenleaf:K562-CRISPRd-tiling-enrchment-R1' since it already exists with aliases '['will-greenleaf:K562-CRISPRd-tiling-enrchment-R1']'. 2020-05-25 03:29:48,501:eu_debug: IN post(). 2020-05-25 03:29:48,578:eu_debug: <<<<<< POST file record will-greenleaf:K562-CRISPRd-tiling-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562-CRISPRd-tiling-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRd_tiling-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.dCas9_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.dCas9_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 2059290, "lab": "/labs/will-greenleaf/", "md5sum": "1fcbdd3e38a4b788a67accd87a257dec", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.tiling.T14vsPlasmid_D_R2_Tiling_rhos.csv" } 2020-05-25 03:29:49,050:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:1fcbdd3e38a4b788a67accd87a257dec'), ('alias', 'will-greenleaf:K562-CRISPRd-tiling-enrchment-R2')]"} 2020-05-25 03:29:49,050:eu_debug: >>>>>>GET will-greenleaf:K562-CRISPRd-tiling-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRd-tiling-enrchment-R2/?format=json&datastore=database 2020-05-25 03:29:49,279:eu_debug: Will not POST 'will-greenleaf:K562-CRISPRd-tiling-enrchment-R2' since it already exists with aliases '['will-greenleaf:K562-CRISPRd-tiling-enrchment-R2']'. 2020-05-25 03:29:49,280:eu_debug: IN post(). 2020-05-25 03:29:49,370:eu_debug: <<<<<< POST file record will-greenleaf:K562-CRISPRi-tiling-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562-CRISPRi-tiling-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_tiling-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.CRISPRi_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.CRISPRi_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 2060008, "lab": "/labs/will-greenleaf/", "md5sum": "25095f5a5c3ccca0995b84ef18fbbdb2", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.tiling.T14vsPlasmid_I_R1_Tiling_rhos.csv" } 2020-05-25 03:29:49,853:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562-CRISPRi-tiling-enrchment-R1'), ('alias', 'md5:25095f5a5c3ccca0995b84ef18fbbdb2')]"} 2020-05-25 03:29:49,853:eu_debug: >>>>>>GET will-greenleaf:K562-CRISPRi-tiling-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRi-tiling-enrchment-R1/?format=json&datastore=database 2020-05-25 03:29:50,090:eu_debug: Will not POST 'will-greenleaf:K562-CRISPRi-tiling-enrchment-R1' since it already exists with aliases '['will-greenleaf:K562-CRISPRi-tiling-enrchment-R1']'. 2020-05-25 03:29:50,090:eu_debug: IN post(). 2020-05-25 03:29:50,175:eu_debug: <<<<<< POST file record will-greenleaf:K562-CRISPRi-tiling-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562-CRISPRi-tiling-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRk_tiling-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.CRISPRi_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.CRISPRi_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 2060452, "lab": "/labs/will-greenleaf/", "md5sum": "fd7a88d91e0f8af14a0a79ba48a4c6f8", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.tiling.T14vsPlasmid_I_R2_Tiling_rhos.csv" } 2020-05-25 03:29:50,657:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:fd7a88d91e0f8af14a0a79ba48a4c6f8'), ('alias', 'will-greenleaf:K562-CRISPRi-tiling-enrchment-R2')]"} 2020-05-25 03:29:50,657:eu_debug: >>>>>>GET will-greenleaf:K562-CRISPRi-tiling-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRi-tiling-enrchment-R2/?format=json&datastore=database 2020-05-25 03:29:50,897:eu_debug: Will not POST 'will-greenleaf:K562-CRISPRi-tiling-enrchment-R2' since it already exists with aliases '['will-greenleaf:K562-CRISPRi-tiling-enrchment-R2']'. 2020-05-25 03:29:50,898:eu_debug: IN post(). 2020-05-25 03:29:50,984:eu_debug: <<<<<< POST file record will-greenleaf:K562-CRISPRk-tiling-enrchment-R1 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562-CRISPRk-tiling-enrchment-R1" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_tiling-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.CRKO_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.CRKO_T14_Rep1.fastq.gz" ], "file_format": "csv", "file_size": 2060083, "lab": "/labs/will-greenleaf/", "md5sum": "42ccdfba17c0787c890caeaa2ce7841c", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.tiling.T14vsPlasmid_K_R1_Tiling_rhos.csv" } 2020-05-25 03:29:51,440:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'md5:42ccdfba17c0787c890caeaa2ce7841c'), ('alias', 'will-greenleaf:K562-CRISPRk-tiling-enrchment-R1')]"} 2020-05-25 03:29:51,441:eu_debug: >>>>>>GET will-greenleaf:K562-CRISPRk-tiling-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRk-tiling-enrchment-R1/?format=json&datastore=database 2020-05-25 03:29:51,679:eu_debug: Will not POST 'will-greenleaf:K562-CRISPRk-tiling-enrchment-R1' since it already exists with aliases '['will-greenleaf:K562-CRISPRk-tiling-enrchment-R1']'. 2020-05-25 03:29:51,679:eu_debug: IN post(). 2020-05-25 03:29:51,760:eu_debug: <<<<<< POST file record will-greenleaf:K562-CRISPRk-tiling-enrchment-R2 To DCC with URL https://www.encodeproject.org/file and this payload: { "aliases": [ "will-greenleaf:K562-CRISPRk-tiling-enrchment-R2" ], "award": "/awards/UM1HG009436/", "dataset": "will-greenleaf:K562_CRISPRi_tiling-T14", "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.CRKO_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.CRKO_T14_Rep2.fastq.gz" ], "file_format": "csv", "file_size": 2060126, "lab": "/labs/will-greenleaf/", "md5sum": "ab13517df30f98218c7d6595bf423a53", "output_type": "enrichment", "submitted_file_name": "CRISPR-screen.tiling.T14vsPlasmid_K_R2_Tiling_rhos.csv" } 2020-05-25 03:29:52,231:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:K562-CRISPRk-tiling-enrchment-R2'), ('alias', 'md5:ab13517df30f98218c7d6595bf423a53')]"} 2020-05-25 03:29:52,231:eu_debug: >>>>>>GET will-greenleaf:K562-CRISPRk-tiling-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRk-tiling-enrchment-R2/?format=json&datastore=database 2020-05-25 03:29:52,471:eu_debug: Will not POST 'will-greenleaf:K562-CRISPRk-tiling-enrchment-R2' since it already exists with aliases '['will-greenleaf:K562-CRISPRk-tiling-enrchment-R2']'. 2020-05-25 03:30:58,881:eu_debug: Connecting to www.encodeproject.org 2020-05-25 03:30:58,884:eu_debug: submission=False: In non-submission mode. 2020-05-25 03:30:59,202:eu_debug: submission=True: In submission mode. 2020-05-25 03:30:59,220:eu_debug: IN patch() 2020-05-25 03:30:59,220:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment/?format=json&datastore=database&frame=edit 2020-05-25 03:30:59,330:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment and this payload: { "derived_from": [ "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T1.fastq.gz", "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T2.fastq.gz", "ENCFF175MWK", "ENCFF048HME", "ENCFF041LGI", "will-greenleaf:K562_CTCF-FineMap_Plasmid_R1.fastq.gz" ] } 2020-05-25 03:30:59,451:eu_debug: Failed to PATCH will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment 2020-05-25 03:30:59,451:eu_debug: <<<<<< DCC PATCH RESPONSE: 2020-05-25 03:30:59,451:eu_debug: { "@type": [ "ValidationFailure", "Error" ], "code": 422, "description": "Failed validation", "errors": [ { "description": "['1951c7e3-e8b7-426c-a77d-b9863c86da3f', '70625d72-086f-49a3-9499-6e5119aeddbe', '70625d72-086f-49a3-9499-6e5119aeddbe', '458f2e56-a8fc-42df-b03e-6db50e0d0696', '1951c7e3-e8b7-426c-a77d-b9863c86da3f', '458f2e56-a8fc-42df-b03e-6db50e0d0696'] has non-unique elements", "location": "body", "name": [ "derived_from" ] } ], "status": "error", "title": "Unprocessable Entity" } 2020-05-25 03:33:09,163:eu_debug: Connecting to www.encodeproject.org 2020-05-25 03:33:09,165:eu_debug: submission=False: In non-submission mode. 2020-05-25 03:33:09,497:eu_debug: submission=True: In submission mode. 2020-05-25 03:33:09,506:eu_debug: IN patch() 2020-05-25 03:33:09,506:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1/?format=json&datastore=database&frame=edit 2020-05-25 03:33:09,607:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1 and this payload: { "derived_from": [ "ENCFF854ZKJ", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep1.fastq.gz", "ENCFF177ZDZ" ] } 2020-05-25 03:33:09,725:eu_debug: Failed to PATCH will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1 2020-05-25 03:33:09,725:eu_debug: <<<<<< DCC PATCH RESPONSE: 2020-05-25 03:33:09,726:eu_debug: { "@type": [ "ValidationFailure", "Error" ], "code": 422, "description": "Failed validation", "errors": [ { "description": "['b859ade9-90e7-4c59-a3bf-403bea492562', '16b7129c-e05e-498c-80d3-e338dacc41c7', 'b859ade9-90e7-4c59-a3bf-403bea492562', '16b7129c-e05e-498c-80d3-e338dacc41c7'] has non-unique elements", "location": "body", "name": [ "derived_from" ] } ], "status": "error", "title": "Unprocessable Entity" } 2020-05-26 23:34:15,180:eu_debug: Connecting to www.encodeproject.org 2020-05-26 23:34:15,197:eu_debug: submission=False: In non-submission mode. 2020-05-26 23:34:15,501:eu_debug: submission=True: In submission mode. 2020-05-26 23:34:15,517:eu_debug: IN patch() 2020-05-26 23:34:15,518:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1/?format=json&datastore=database&frame=edit 2020-05-26 23:34:15,621:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R1 and this payload: { "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R1.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep1.fastq.gz" ] } 2020-05-26 23:34:15,784:eu_debug: Success. 2020-05-26 23:34:15,784:eu_debug: IN patch() 2020-05-26 23:34:15,784:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2/?format=json&datastore=database&frame=edit 2020-05-26 23:34:15,880:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF-growth_screen-T14-enrchment-R2 and this payload: { "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T0_R2.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRa_T14_Rep2.fastq.gz" ] } 2020-05-26 23:34:16,046:eu_debug: Success. 2020-05-26 23:34:16,046:eu_debug: IN patch() 2020-05-26 23:34:16,047:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1/?format=json&datastore=database&frame=edit 2020-05-26 23:34:16,152:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R1 and this payload: { "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0_R1.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep1.fastq.gz" ] } 2020-05-26 23:34:16,308:eu_debug: Success. 2020-05-26 23:34:16,308:eu_debug: IN patch() 2020-05-26 23:34:16,308:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2/?format=json&datastore=database&frame=edit 2020-05-26 23:34:16,402:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF-growth_screen-T14-enrchment-R2 and this payload: { "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T0_R2.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.dCas9_T14_Rep2.fastq.gz" ] } 2020-05-26 23:34:16,568:eu_debug: Success. 2020-05-26 23:34:16,569:eu_debug: IN patch() 2020-05-26 23:34:16,569:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1/?format=json&datastore=database&frame=edit 2020-05-26 23:34:16,672:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R1 and this payload: { "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R1.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep1.fastq.gz" ] } 2020-05-26 23:34:16,818:eu_debug: Success. 2020-05-26 23:34:16,819:eu_debug: IN patch() 2020-05-26 23:34:16,819:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2/?format=json&datastore=database&frame=edit 2020-05-26 23:34:16,918:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF-growth_screen-T14-enrchment-R2 and this payload: { "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T0_R2.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRISPRi_T14_Rep2.fastq.gz" ] } 2020-05-26 23:34:17,084:eu_debug: Success. 2020-05-26 23:34:17,084:eu_debug: IN patch() 2020-05-26 23:34:17,085:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1/?format=json&datastore=database&frame=edit 2020-05-26 23:34:17,184:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R1 and this payload: { "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R1.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep1.fastq.gz" ] } 2020-05-26 23:34:17,341:eu_debug: Success. 2020-05-26 23:34:17,341:eu_debug: IN patch() 2020-05-26 23:34:17,342:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2/?format=json&datastore=database&frame=edit 2020-05-26 23:34:17,441:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-growth_screen-T14-enrchment-R2 and this payload: { "derived_from": [ "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T0_R2.fastq.gz", "will-greenleaf:CRISPR-screen.CTCF-growth_screen.CRKO_T14_Rep2.fastq.gz" ] } 2020-05-26 23:34:17,592:eu_debug: Success. 2020-05-26 23:34:17,592:eu_debug: IN patch() 2020-05-26 23:34:17,593:eu_debug: >>>>>>GET will-greenleaf:K562-CRISPRa-tiling-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRa-tiling-enrchment-R1/?format=json&datastore=database&frame=edit 2020-05-26 23:34:17,694:eu_debug: <<<<<< PATCHING will-greenleaf:K562-CRISPRa-tiling-enrchment-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRa-tiling-enrchment-R1 and this payload: { "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.CRISPRa_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.CRISPRa_T14_Rep1.fastq.gz" ] } 2020-05-26 23:34:17,847:eu_debug: Success. 2020-05-26 23:34:17,848:eu_debug: IN patch() 2020-05-26 23:34:17,848:eu_debug: >>>>>>GET will-greenleaf:K562-CRISPRa-tiling-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRa-tiling-enrchment-R2/?format=json&datastore=database&frame=edit 2020-05-26 23:34:17,945:eu_debug: <<<<<< PATCHING will-greenleaf:K562-CRISPRa-tiling-enrchment-R2 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRa-tiling-enrchment-R2 and this payload: { "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.CRISPRa_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.CRISPRa_T14_Rep2.fastq.gz" ] } 2020-05-26 23:34:18,091:eu_debug: Success. 2020-05-26 23:34:18,091:eu_debug: IN patch() 2020-05-26 23:34:18,092:eu_debug: >>>>>>GET will-greenleaf:K562-CRISPRd-tiling-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRd-tiling-enrchment-R1/?format=json&datastore=database&frame=edit 2020-05-26 23:34:18,199:eu_debug: <<<<<< PATCHING will-greenleaf:K562-CRISPRd-tiling-enrchment-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRd-tiling-enrchment-R1 and this payload: { "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.dCas9_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.dCas9_T14_Rep1.fastq.gz" ] } 2020-05-26 23:34:18,359:eu_debug: Success. 2020-05-26 23:34:18,360:eu_debug: IN patch() 2020-05-26 23:34:18,360:eu_debug: >>>>>>GET will-greenleaf:K562-CRISPRd-tiling-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRd-tiling-enrchment-R2/?format=json&datastore=database&frame=edit 2020-05-26 23:34:18,463:eu_debug: <<<<<< PATCHING will-greenleaf:K562-CRISPRd-tiling-enrchment-R2 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRd-tiling-enrchment-R2 and this payload: { "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.dCas9_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.dCas9_T14_Rep2.fastq.gz" ] } 2020-05-26 23:34:18,611:eu_debug: Success. 2020-05-26 23:34:18,611:eu_debug: IN patch() 2020-05-26 23:34:18,612:eu_debug: >>>>>>GET will-greenleaf:K562-CRISPRi-tiling-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRi-tiling-enrchment-R1/?format=json&datastore=database&frame=edit 2020-05-26 23:34:18,715:eu_debug: <<<<<< PATCHING will-greenleaf:K562-CRISPRi-tiling-enrchment-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRi-tiling-enrchment-R1 and this payload: { "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.CRISPRi_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.CRISPRi_T14_Rep1.fastq.gz" ] } 2020-05-26 23:34:18,869:eu_debug: Success. 2020-05-26 23:34:18,869:eu_debug: IN patch() 2020-05-26 23:34:18,870:eu_debug: >>>>>>GET will-greenleaf:K562-CRISPRi-tiling-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRi-tiling-enrchment-R2/?format=json&datastore=database&frame=edit 2020-05-26 23:34:18,970:eu_debug: <<<<<< PATCHING will-greenleaf:K562-CRISPRi-tiling-enrchment-R2 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRi-tiling-enrchment-R2 and this payload: { "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.CRISPRi_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.CRISPRi_T14_Rep2.fastq.gz" ] } 2020-05-26 23:34:19,120:eu_debug: Success. 2020-05-26 23:34:19,121:eu_debug: IN patch() 2020-05-26 23:34:19,121:eu_debug: >>>>>>GET will-greenleaf:K562-CRISPRk-tiling-enrchment-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRk-tiling-enrchment-R1/?format=json&datastore=database&frame=edit 2020-05-26 23:34:19,218:eu_debug: <<<<<< PATCHING will-greenleaf:K562-CRISPRk-tiling-enrchment-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRk-tiling-enrchment-R1 and this payload: { "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.CRKO_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.CRKO_T14_Rep1.fastq.gz" ] } 2020-05-26 23:34:19,365:eu_debug: Success. 2020-05-26 23:34:19,366:eu_debug: IN patch() 2020-05-26 23:34:19,366:eu_debug: >>>>>>GET will-greenleaf:K562-CRISPRk-tiling-enrchment-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRk-tiling-enrchment-R2/?format=json&datastore=database&frame=edit 2020-05-26 23:34:19,467:eu_debug: <<<<<< PATCHING will-greenleaf:K562-CRISPRk-tiling-enrchment-R2 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562-CRISPRk-tiling-enrchment-R2 and this payload: { "derived_from": [ "will-greenleaf:CRISPR-screen.tiling.CRKO_T0.fastq.gz", "will-greenleaf:CRISPR-screen.tiling.CRKO_T14_Rep2.fastq.gz" ] } 2020-05-26 23:34:19,617:eu_debug: Success. 2020-05-26 23:34:19,618:eu_debug: IN patch() 2020-05-26 23:34:19,618:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment/?format=json&datastore=database&frame=edit 2020-05-26 23:34:19,719:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap-T20-enrchment and this payload: { "derived_from": [ "will-greenleaf:K562_CTCF-FineMap_Plasmid_R1.fastq.gz", "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T1.fastq.gz", "will-greenleaf:K562_CRISPRk_CTCF-FineMap_T20-R1_T2.fastq.gz" ] } 2020-05-26 23:34:19,881:eu_debug: Success. 2020-06-16 11:34:33,198:eu_debug: Connecting to www.encodeproject.org 2020-06-16 11:34:33,216:eu_debug: submission=False: In non-submission mode. 2020-06-16 11:34:33,569:eu_debug: submission=True: In submission mode. 2020-06-16 11:34:51,556:eu_debug: Connecting to www.encodeproject.org 2020-06-16 11:34:51,558:eu_debug: submission=False: In non-submission mode. 2020-06-16 11:34:51,847:eu_debug: submission=True: In submission mode. 2020-06-16 11:37:04,034:eu_debug: Connecting to www.encodeproject.org 2020-06-16 11:37:04,035:eu_debug: submission=False: In non-submission mode. 2020-06-16 11:37:04,325:eu_debug: submission=True: In submission mode. 2020-06-16 11:37:04,333:eu_debug: IN post(). 2020-06-16 11:37:04,333:eu_debug: <<<<<< POST genetic_modification record will-greenleaf:interference To DCC with URL https://www.encodeproject.org/genetic_modification and this payload: { "aliases": [ "will-greenleaf:interference" ], "award": "/awards/UM1HG009436/", "category": "interference", "lab": "/labs/will-greenleaf/", "method": "CRISPR", "purpose": "characterization" } 2020-06-16 11:37:04,462:eu_debug: Success. 2020-06-16 11:37:04,462:eu_debug: IN post(). 2020-06-16 11:37:04,463:eu_debug: <<<<<< POST genetic_modification record will-greenleaf:activation To DCC with URL https://www.encodeproject.org/genetic_modification and this payload: { "aliases": [ "will-greenleaf:activation" ], "award": "/awards/UM1HG009436/", "category": "activation", "lab": "/labs/will-greenleaf/", "method": "CRISPR", "purpose": "characterization" } 2020-06-16 11:37:04,587:eu_debug: Success. 2020-06-16 11:37:04,588:eu_debug: IN post(). 2020-06-16 11:37:04,588:eu_debug: <<<<<< POST genetic_modification record will-greenleaf:deletion To DCC with URL https://www.encodeproject.org/genetic_modification and this payload: { "aliases": [ "will-greenleaf:deletion" ], "award": "/awards/UM1HG009436/", "category": "deletion", "lab": "/labs/will-greenleaf/", "method": "CRISPR", "purpose": "characterization" } 2020-06-16 11:37:04,709:eu_debug: Success. 2020-06-16 11:37:04,709:eu_debug: IN post(). 2020-06-16 11:37:04,710:eu_debug: <<<<<< POST genetic_modification record will-greenleaf:dCas9 To DCC with URL https://www.encodeproject.org/genetic_modification and this payload: { "aliases": [ "will-greenleaf:dCas9" ], "award": "/awards/UM1HG009436/", "category": "CRISPR binding", "lab": "/labs/will-greenleaf/", "method": "CRISPR", "purpose": "characterization" } 2020-06-16 11:37:04,808:eu_debug: Failed to POST will-greenleaf:dCas9 2020-06-16 11:37:04,808:eu_debug: <<<<<< DCC POST RESPONSE: 2020-06-16 11:37:04,809:eu_debug: { "@type": [ "ValidationFailure", "Error" ], "code": 422, "description": "Failed validation", "errors": [ { "description": "'CRISPR binding' is not one of ['deletion', 'interference', 'insertion', 'mutagenesis', 'replacement', 'episome', 'activation', 'knockout', 'disruption', 'inhibition', 'binding', 'transgene insertion']", "location": "body", "name": [ "category" ] }, { "description": "{'lab': '/labs/will-greenleaf/', 'award': '/awards/UM1HG009436/', 'category': 'CRISPR binding', 'method': 'CRISPR', 'purpose': 'characterization', 'aliases': ['will-greenleaf:dCas9']} is not valid under any of the given schemas", "location": "body", "name": [] }, { "description": "{'lab': '/labs/will-greenleaf/', 'award': '/awards/UM1HG009436/', 'category': 'CRISPR binding', 'method': 'CRISPR', 'purpose': 'characterization', 'aliases': ['will-greenleaf:dCas9']} is not valid under any of the given schemas", "location": "body", "name": [] } ], "status": "error", "title": "Unprocessable Entity" } 2020-06-16 11:37:48,306:eu_debug: Connecting to www.encodeproject.org 2020-06-16 11:37:48,308:eu_debug: submission=False: In non-submission mode. 2020-06-16 11:37:48,659:eu_debug: submission=True: In submission mode. 2020-06-16 11:37:48,668:eu_debug: IN post(). 2020-06-16 11:37:48,668:eu_debug: <<<<<< POST genetic_modification record will-greenleaf:interference To DCC with URL https://www.encodeproject.org/genetic_modification and this payload: { "aliases": [ "will-greenleaf:interference" ], "award": "/awards/UM1HG009436/", "category": "interference", "lab": "/labs/will-greenleaf/", "method": "CRISPR", "purpose": "characterization" } 2020-06-16 11:37:48,779:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:interference')]"} 2020-06-16 11:37:48,780:eu_debug: >>>>>>GET will-greenleaf:interference From DCC with URL https://www.encodeproject.org/will-greenleaf:interference/?format=json&datastore=database 2020-06-16 11:37:48,937:eu_debug: Will not POST 'will-greenleaf:interference' since it already exists with aliases '['will-greenleaf:interference']'. 2020-06-16 11:37:48,937:eu_debug: IN post(). 2020-06-16 11:37:48,938:eu_debug: <<<<<< POST genetic_modification record will-greenleaf:activation To DCC with URL https://www.encodeproject.org/genetic_modification and this payload: { "aliases": [ "will-greenleaf:activation" ], "award": "/awards/UM1HG009436/", "category": "activation", "lab": "/labs/will-greenleaf/", "method": "CRISPR", "purpose": "characterization" } 2020-06-16 11:37:49,063:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:activation')]"} 2020-06-16 11:37:49,063:eu_debug: >>>>>>GET will-greenleaf:activation From DCC with URL https://www.encodeproject.org/will-greenleaf:activation/?format=json&datastore=database 2020-06-16 11:37:49,223:eu_debug: Will not POST 'will-greenleaf:activation' since it already exists with aliases '['will-greenleaf:activation']'. 2020-06-16 11:37:49,223:eu_debug: IN post(). 2020-06-16 11:37:49,224:eu_debug: <<<<<< POST genetic_modification record will-greenleaf:deletion To DCC with URL https://www.encodeproject.org/genetic_modification and this payload: { "aliases": [ "will-greenleaf:deletion" ], "award": "/awards/UM1HG009436/", "category": "deletion", "lab": "/labs/will-greenleaf/", "method": "CRISPR", "purpose": "characterization" } 2020-06-16 11:37:49,333:eu_debug: {'@type': ['HTTPConflict', 'Error'], 'status': 'error', 'code': 409, 'title': 'Conflict', 'description': 'There was a conflict when trying to complete your request.', 'detail': "Keys conflict: [('alias', 'will-greenleaf:deletion')]"} 2020-06-16 11:37:49,333:eu_debug: >>>>>>GET will-greenleaf:deletion From DCC with URL https://www.encodeproject.org/will-greenleaf:deletion/?format=json&datastore=database 2020-06-16 11:37:49,479:eu_debug: Will not POST 'will-greenleaf:deletion' since it already exists with aliases '['will-greenleaf:deletion']'. 2020-06-16 11:37:49,480:eu_debug: IN post(). 2020-06-16 11:37:49,480:eu_debug: <<<<<< POST genetic_modification record will-greenleaf:dCas9 To DCC with URL https://www.encodeproject.org/genetic_modification and this payload: { "aliases": [ "will-greenleaf:dCas9" ], "award": "/awards/UM1HG009436/", "category": "binding", "lab": "/labs/will-greenleaf/", "method": "CRISPR", "purpose": "characterization" } 2020-06-16 11:37:49,594:eu_debug: Success. 2020-06-16 11:39:34,340:eu_debug: Connecting to www.encodeproject.org 2020-06-16 11:39:34,341:eu_debug: submission=False: In non-submission mode. 2020-06-16 11:39:34,624:eu_debug: submission=True: In submission mode. 2020-06-16 11:42:27,228:eu_debug: Connecting to www.encodeproject.org 2020-06-16 11:42:27,229:eu_debug: submission=False: In non-submission mode. 2020-06-16 11:42:27,595:eu_debug: submission=True: In submission mode. 2020-06-16 11:42:27,605:eu_debug: IN patch() 2020-06-16 11:42:27,605:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R1/?format=json&datastore=database&frame=edit 2020-06-16 11:42:27,716:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R1 and this payload: { "genetic_modifications": [ "will-greenleaf:deletion" ], "post_nucleic_acid_delivery_time": 6, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:42:27,975:eu_debug: Success. 2020-06-16 11:42:27,975:eu_debug: IN patch() 2020-06-16 11:42:27,976:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R2/?format=json&datastore=database&frame=edit 2020-06-16 11:42:28,082:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R2 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T6-R2 and this payload: { "genetic_modifications": [ "will-greenleaf:deletion" ], "post_nucleic_acid_delivery_time": 6, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:42:28,331:eu_debug: Success. 2020-06-16 11:42:28,332:eu_debug: IN patch() 2020-06-16 11:42:28,332:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R1/?format=json&datastore=database&frame=edit 2020-06-16 11:42:28,441:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R1 and this payload: { "genetic_modifications": [ "will-greenleaf:deletion" ], "post_nucleic_acid_delivery_time": 20, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:42:28,723:eu_debug: Success. 2020-06-16 11:42:28,723:eu_debug: IN patch() 2020-06-16 11:42:28,724:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R2/?format=json&datastore=database&frame=edit 2020-06-16 11:42:28,827:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R2 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-FineMap_screen_T20-R2 and this payload: { "genetic_modifications": [ "will-greenleaf:deletion" ], "post_nucleic_acid_delivery_time": 20, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:42:29,081:eu_debug: Success. 2020-06-16 11:42:29,082:eu_debug: IN patch() 2020-06-16 11:42:29,082:eu_debug: >>>>>>GET will-greenleaf:K562_CTCF-FineMap_Plasmid-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CTCF-FineMap_Plasmid-R1/?format=json&datastore=database&frame=edit 2020-06-16 11:42:29,192:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CTCF-FineMap_Plasmid-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CTCF-FineMap_Plasmid-R1 and this payload: { "genetic_modifications": [ "will-greenleaf:deletion" ], "post_nucleic_acid_delivery_time": 0, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:42:29,450:eu_debug: Success. 2020-06-16 11:43:17,149:eu_debug: Connecting to www.encodeproject.org 2020-06-16 11:43:17,150:eu_debug: submission=False: In non-submission mode. 2020-06-16 11:43:17,471:eu_debug: submission=True: In submission mode. 2020-06-16 11:43:17,479:eu_debug: IN patch() 2020-06-16 11:43:17,479:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T0-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T0-R1/?format=json&datastore=database&frame=edit 2020-06-16 11:43:17,578:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T0-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T0-R1 and this payload: { "genetic_modifications": [ "will-greenleaf:activation" ], "post_nucleic_acid_delivery_time": 0, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:43:17,842:eu_debug: Success. 2020-06-16 11:43:17,843:eu_debug: IN patch() 2020-06-16 11:43:17,843:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T0-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T0-R1/?format=json&datastore=database&frame=edit 2020-06-16 11:43:17,952:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T0-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T0-R1 and this payload: { "genetic_modifications": [ "will-greenleaf:interference" ], "post_nucleic_acid_delivery_time": 0, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:43:18,208:eu_debug: Success. 2020-06-16 11:43:18,209:eu_debug: IN patch() 2020-06-16 11:43:18,209:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T0-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T0-R1/?format=json&datastore=database&frame=edit 2020-06-16 11:43:18,308:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T0-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T0-R1 and this payload: { "genetic_modifications": [ "will-greenleaf:deletion" ], "post_nucleic_acid_delivery_time": 0, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:43:18,578:eu_debug: Success. 2020-06-16 11:43:18,579:eu_debug: IN patch() 2020-06-16 11:43:18,579:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T0-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T0-R1/?format=json&datastore=database&frame=edit 2020-06-16 11:43:18,676:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T0-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T0-R1 and this payload: { "genetic_modifications": [ "will-greenleaf:binding" ], "post_nucleic_acid_delivery_time": 0, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:43:18,782:eu_debug: Failed to PATCH will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T0-R1 2020-06-16 11:43:18,783:eu_debug: <<<<<< DCC PATCH RESPONSE: 2020-06-16 11:43:18,783:eu_debug: { "@type": [ "ValidationFailure", "Error" ], "code": 422, "description": "Failed validation", "errors": [ { "description": "'will-greenleaf:binding' not found", "location": "body", "name": [ "genetic_modifications", 0 ] } ], "status": "error", "title": "Unprocessable Entity" } 2020-06-16 11:44:06,360:eu_debug: Connecting to www.encodeproject.org 2020-06-16 11:44:06,361:eu_debug: submission=False: In non-submission mode. 2020-06-16 11:44:06,683:eu_debug: submission=True: In submission mode. 2020-06-16 11:44:06,691:eu_debug: IN patch() 2020-06-16 11:44:06,692:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T0-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T0-R1/?format=json&datastore=database&frame=edit 2020-06-16 11:44:06,791:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T0-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T0-R1 and this payload: { "genetic_modifications": [ "will-greenleaf:activation" ], "post_nucleic_acid_delivery_time": 0, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:44:07,042:eu_debug: Success. 2020-06-16 11:44:07,043:eu_debug: IN patch() 2020-06-16 11:44:07,043:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T0-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T0-R1/?format=json&datastore=database&frame=edit 2020-06-16 11:44:07,144:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T0-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T0-R1 and this payload: { "genetic_modifications": [ "will-greenleaf:interference" ], "post_nucleic_acid_delivery_time": 0, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:44:07,391:eu_debug: Success. 2020-06-16 11:44:07,392:eu_debug: IN patch() 2020-06-16 11:44:07,392:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T0-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T0-R1/?format=json&datastore=database&frame=edit 2020-06-16 11:44:07,494:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T0-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T0-R1 and this payload: { "genetic_modifications": [ "will-greenleaf:deletion" ], "post_nucleic_acid_delivery_time": 0, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:44:07,760:eu_debug: Success. 2020-06-16 11:44:07,761:eu_debug: IN patch() 2020-06-16 11:44:07,761:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T0-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T0-R1/?format=json&datastore=database&frame=edit 2020-06-16 11:44:07,865:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T0-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T0-R1 and this payload: { "genetic_modifications": [ "will-greenleaf:dCas9" ], "post_nucleic_acid_delivery_time": 0, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:44:08,116:eu_debug: Success. 2020-06-16 11:44:08,117:eu_debug: IN patch() 2020-06-16 11:44:08,117:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T0-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T0-R2/?format=json&datastore=database&frame=edit 2020-06-16 11:44:08,222:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T0-R2 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T0-R2 and this payload: { "genetic_modifications": [ "will-greenleaf:activation" ], "post_nucleic_acid_delivery_time": 0, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:44:08,480:eu_debug: Success. 2020-06-16 11:44:08,481:eu_debug: IN patch() 2020-06-16 11:44:08,481:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T0-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T0-R2/?format=json&datastore=database&frame=edit 2020-06-16 11:44:08,585:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T0-R2 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T0-R2 and this payload: { "genetic_modifications": [ "will-greenleaf:interference" ], "post_nucleic_acid_delivery_time": 0, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:44:08,829:eu_debug: Success. 2020-06-16 11:44:08,829:eu_debug: IN patch() 2020-06-16 11:44:08,830:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T0-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T0-R2/?format=json&datastore=database&frame=edit 2020-06-16 11:44:08,928:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T0-R2 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T0-R2 and this payload: { "genetic_modifications": [ "will-greenleaf:deletion" ], "post_nucleic_acid_delivery_time": 0, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:44:09,189:eu_debug: Success. 2020-06-16 11:44:09,190:eu_debug: IN patch() 2020-06-16 11:44:09,190:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T0-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T0-R2/?format=json&datastore=database&frame=edit 2020-06-16 11:44:09,296:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T0-R2 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T0-R2 and this payload: { "genetic_modifications": [ "will-greenleaf:dCas9" ], "post_nucleic_acid_delivery_time": 0, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:44:09,543:eu_debug: Success. 2020-06-16 11:44:09,544:eu_debug: IN patch() 2020-06-16 11:44:09,544:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T14-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T14-R1/?format=json&datastore=database&frame=edit 2020-06-16 11:44:09,642:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T14-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T14-R1 and this payload: { "genetic_modifications": [ "will-greenleaf:activation" ], "post_nucleic_acid_delivery_time": 14, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:44:09,886:eu_debug: Success. 2020-06-16 11:44:09,886:eu_debug: IN patch() 2020-06-16 11:44:09,887:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T14-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T14-R1/?format=json&datastore=database&frame=edit 2020-06-16 11:44:09,981:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T14-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T14-R1 and this payload: { "genetic_modifications": [ "will-greenleaf:interference" ], "post_nucleic_acid_delivery_time": 14, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:44:10,237:eu_debug: Success. 2020-06-16 11:44:10,237:eu_debug: IN patch() 2020-06-16 11:44:10,238:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T14-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T14-R1/?format=json&datastore=database&frame=edit 2020-06-16 11:44:10,339:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T14-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T14-R1 and this payload: { "genetic_modifications": [ "will-greenleaf:deletion" ], "post_nucleic_acid_delivery_time": 14, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:44:10,798:eu_debug: Success. 2020-06-16 11:44:10,798:eu_debug: IN patch() 2020-06-16 11:44:10,799:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T14-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T14-R1/?format=json&datastore=database&frame=edit 2020-06-16 11:44:10,899:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T14-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T14-R1 and this payload: { "genetic_modifications": [ "will-greenleaf:dCas9" ], "post_nucleic_acid_delivery_time": 14, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:44:11,147:eu_debug: Success. 2020-06-16 11:44:11,148:eu_debug: IN patch() 2020-06-16 11:44:11,148:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T14-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T14-R2/?format=json&datastore=database&frame=edit 2020-06-16 11:44:11,253:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T14-R2 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_CTCF-growth_screen_screen_T14-R2 and this payload: { "genetic_modifications": [ "will-greenleaf:activation" ], "post_nucleic_acid_delivery_time": 14, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:44:11,510:eu_debug: Success. 2020-06-16 11:44:11,511:eu_debug: IN patch() 2020-06-16 11:44:11,511:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T14-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T14-R2/?format=json&datastore=database&frame=edit 2020-06-16 11:44:11,615:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T14-R2 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_CTCF-growth_screen_screen_T14-R2 and this payload: { "genetic_modifications": [ "will-greenleaf:interference" ], "post_nucleic_acid_delivery_time": 14, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:44:11,868:eu_debug: Success. 2020-06-16 11:44:11,869:eu_debug: IN patch() 2020-06-16 11:44:11,869:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T14-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T14-R2/?format=json&datastore=database&frame=edit 2020-06-16 11:44:11,974:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T14-R2 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_CTCF-growth_screen_screen_T14-R2 and this payload: { "genetic_modifications": [ "will-greenleaf:deletion" ], "post_nucleic_acid_delivery_time": 14, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:44:12,234:eu_debug: Success. 2020-06-16 11:44:12,234:eu_debug: IN patch() 2020-06-16 11:44:12,235:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T14-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T14-R2/?format=json&datastore=database&frame=edit 2020-06-16 11:44:12,340:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T14-R2 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_CTCF-growth_screen_screen_T14-R2 and this payload: { "genetic_modifications": [ "will-greenleaf:dCas9" ], "post_nucleic_acid_delivery_time": 14, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:44:12,761:eu_debug: Success. 2020-06-16 11:45:00,808:eu_debug: Connecting to www.encodeproject.org 2020-06-16 11:45:00,809:eu_debug: submission=False: In non-submission mode. 2020-06-16 11:45:01,088:eu_debug: submission=True: In submission mode. 2020-06-16 11:45:01,097:eu_debug: IN patch() 2020-06-16 11:45:01,097:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_tiling_screen_T0-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_tiling_screen_T0-R1/?format=json&datastore=database&frame=edit 2020-06-16 11:45:01,195:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRa_tiling_screen_T0-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_tiling_screen_T0-R1 and this payload: { "genetic_modifications": [ "will-greenleaf:activation" ], "post_nucleic_acid_delivery_time": 0, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:45:01,453:eu_debug: Success. 2020-06-16 11:45:01,454:eu_debug: IN patch() 2020-06-16 11:45:01,454:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_tiling_screen_T0-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_tiling_screen_T0-R1/?format=json&datastore=database&frame=edit 2020-06-16 11:45:01,569:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRi_tiling_screen_T0-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_tiling_screen_T0-R1 and this payload: { "genetic_modifications": [ "will-greenleaf:interference" ], "post_nucleic_acid_delivery_time": 0, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:45:02,200:eu_debug: Success. 2020-06-16 11:45:02,201:eu_debug: IN patch() 2020-06-16 11:45:02,201:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_tiling_screen_T0-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_tiling_screen_T0-R1/?format=json&datastore=database&frame=edit 2020-06-16 11:45:02,312:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRk_tiling_screen_T0-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_tiling_screen_T0-R1 and this payload: { "genetic_modifications": [ "will-greenleaf:deletion" ], "post_nucleic_acid_delivery_time": 0, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:45:02,597:eu_debug: Success. 2020-06-16 11:45:02,598:eu_debug: IN patch() 2020-06-16 11:45:02,598:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_tiling_screen_T0-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_tiling_screen_T0-R1/?format=json&datastore=database&frame=edit 2020-06-16 11:45:02,698:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRd_tiling_screen_T0-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_tiling_screen_T0-R1 and this payload: { "genetic_modifications": [ "will-greenleaf:dCas9" ], "post_nucleic_acid_delivery_time": 0, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:45:03,012:eu_debug: Success. 2020-06-16 11:45:03,012:eu_debug: IN patch() 2020-06-16 11:45:03,012:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_tiling_screen_T14-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_tiling_screen_T14-R1/?format=json&datastore=database&frame=edit 2020-06-16 11:45:03,121:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRa_tiling_screen_T14-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_tiling_screen_T14-R1 and this payload: { "genetic_modifications": [ "will-greenleaf:activation" ], "post_nucleic_acid_delivery_time": 14, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:45:03,471:eu_debug: Success. 2020-06-16 11:45:03,471:eu_debug: IN patch() 2020-06-16 11:45:03,472:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_tiling_screen_T14-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_tiling_screen_T14-R1/?format=json&datastore=database&frame=edit 2020-06-16 11:45:03,581:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRi_tiling_screen_T14-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_tiling_screen_T14-R1 and this payload: { "genetic_modifications": [ "will-greenleaf:interference" ], "post_nucleic_acid_delivery_time": 14, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:45:03,904:eu_debug: Success. 2020-06-16 11:45:03,905:eu_debug: IN patch() 2020-06-16 11:45:03,905:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_tiling_screen_T14-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_tiling_screen_T14-R1/?format=json&datastore=database&frame=edit 2020-06-16 11:45:04,016:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRk_tiling_screen_T14-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_tiling_screen_T14-R1 and this payload: { "genetic_modifications": [ "will-greenleaf:deletion" ], "post_nucleic_acid_delivery_time": 14, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:45:04,385:eu_debug: Success. 2020-06-16 11:45:04,386:eu_debug: IN patch() 2020-06-16 11:45:04,386:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_tiling_screen_T14-R1 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_tiling_screen_T14-R1/?format=json&datastore=database&frame=edit 2020-06-16 11:45:04,507:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRd_tiling_screen_T14-R1 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_tiling_screen_T14-R1 and this payload: { "genetic_modifications": [ "will-greenleaf:dCas9" ], "post_nucleic_acid_delivery_time": 14, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:45:04,851:eu_debug: Success. 2020-06-16 11:45:04,852:eu_debug: IN patch() 2020-06-16 11:45:04,852:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRa_tiling_screen_T14-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_tiling_screen_T14-R2/?format=json&datastore=database&frame=edit 2020-06-16 11:45:04,962:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRa_tiling_screen_T14-R2 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRa_tiling_screen_T14-R2 and this payload: { "genetic_modifications": [ "will-greenleaf:activation" ], "post_nucleic_acid_delivery_time": 14, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:45:05,533:eu_debug: Success. 2020-06-16 11:45:05,533:eu_debug: IN patch() 2020-06-16 11:45:05,534:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRi_tiling_screen_T14-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_tiling_screen_T14-R2/?format=json&datastore=database&frame=edit 2020-06-16 11:45:05,633:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRi_tiling_screen_T14-R2 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRi_tiling_screen_T14-R2 and this payload: { "genetic_modifications": [ "will-greenleaf:interference" ], "post_nucleic_acid_delivery_time": 14, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:45:06,132:eu_debug: Success. 2020-06-16 11:45:06,133:eu_debug: IN patch() 2020-06-16 11:45:06,133:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRk_tiling_screen_T14-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_tiling_screen_T14-R2/?format=json&datastore=database&frame=edit 2020-06-16 11:45:06,235:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRk_tiling_screen_T14-R2 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRk_tiling_screen_T14-R2 and this payload: { "genetic_modifications": [ "will-greenleaf:deletion" ], "post_nucleic_acid_delivery_time": 14, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:45:06,507:eu_debug: Success. 2020-06-16 11:45:06,507:eu_debug: IN patch() 2020-06-16 11:45:06,507:eu_debug: >>>>>>GET will-greenleaf:K562_CRISPRd_tiling_screen_T14-R2 From DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_tiling_screen_T14-R2/?format=json&datastore=database&frame=edit 2020-06-16 11:45:06,604:eu_debug: <<<<<< PATCHING will-greenleaf:K562_CRISPRd_tiling_screen_T14-R2 To DCC with URL https://www.encodeproject.org/will-greenleaf:K562_CRISPRd_tiling_screen_T14-R2 and this payload: { "genetic_modifications": [ "will-greenleaf:dCas9" ], "post_nucleic_acid_delivery_time": 14, "post_nucleic_acid_delivery_time_units": "day" } 2020-06-16 11:45:06,869:eu_debug: Success.