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/oak/stanford/groups/akundaje/marinovg/programs/UCSC-utils-2017-07-13/bedToBigBed /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bed ~/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.annoted.bigBed &
/oak/stanford/groups/akundaje/marinovg/programs/UCSC-utils-2017-07-13/bedToBigBed /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Mus_musculus.mm9.fimo.txt.annotated.bed ~/genomes/mm9/mm9.chrom.sizes /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Mus_musculus.mm9.fimo.annoted.bigBed &
/oak/stanford/groups/akundaje/marinovg/programs/UCSC-utils-2017-07-13/bedToBigBed /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Mus_musculus.mm10.fimo.txt.annotated.bed ~/genomes/mm10/mm10.chrom.sizes /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Mus_musculus.mm10.fimo.annoted.bigBed &
/oak/stanford/groups/akundaje/marinovg/programs/UCSC-utils-2017-07-13/bedToBigBed /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Drosophila_melanogaster.fimo.txt.annotated.bed ~/genomes/dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Drosophila_melanogaster.fimo.annoted.bigBed &
/oak/stanford/groups/akundaje/marinovg/programs/UCSC-utils-2017-07-13/bedToBigBed /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Saccharomyces_cerevisiae.fimo.txt.annotated.bed ~/genomes/sacCer3/sacCer3.chrom.sizes /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Saccharomyces_cerevisiae.fimo.annoted.bigBed &
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/oak/stanford/groups/akundaje/marinovg/programs/UCSC-utils-2017-07-13/bedToBigBed /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-JASPAR_CORE_REDUNDANT_2014_vertebrates.hg20.fimo.txt.annotated.bed ~/genomes/hg20/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-JASPAR_CORE_REDUNDANT_2014_vertebrates.hg20.fimo.annoted.bigBed &