segment_juncs v2.0.8 (3864)
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[samopen] SAM header is present: 25 sequences.
Loading reference sequences...
	Loading chr1...done
	Loading chr10...done
	Loading chr11...done
	Loading chr12...done
	Loading chr13...done
	Loading chr14...done
	Loading chr15...done
	Loading chr16...done
	Loading chr17...done
	Loading chr18...done
	Loading chr19...done
	Loading chr2...done
	Loading chr20...done
	Loading chr21...done
	Loading chr22...done
	Loading chr3...done
	Loading chr4...done
	Loading chr5...done
	Loading chr6...done
	Loading chr7...done
	Loading chr8...done
	Loading chr9...done
	Loading chrM...done
	Loading chrX...done
	Loading chrY...done
	Loading ...done
>> Performing segment-search:
	found 0 potential split-segment junctions
	found 0 potential small deletions
	found 0 potential small insertions
>> Performing coverage-search:
 Map covers 281106 bases
 Map covers 275909 bases in sufficiently long segments
 Map contains 5160 good islands
 248074 are left looking bases
 246756 are right looking bases
Collecting potential splice sites in islands
reporting synthetic splice junctions...
Examining donor-acceptor pairings in chr1
Examining donor-acceptor pairings in chr10
Examining donor-acceptor pairings in chr11
Examining donor-acceptor pairings in chr12
Examining donor-acceptor pairings in chr13
Examining donor-acceptor pairings in chr14
Examining donor-acceptor pairings in chr15
Examining donor-acceptor pairings in chr16
Examining donor-acceptor pairings in chr17
Examining donor-acceptor pairings in chr18
Examining donor-acceptor pairings in chr19
Examining donor-acceptor pairings in chr2
Examining donor-acceptor pairings in chr20
Examining donor-acceptor pairings in chr21
Examining donor-acceptor pairings in chr22
Examining donor-acceptor pairings in chr3
Examining donor-acceptor pairings in chr4
Examining donor-acceptor pairings in chr5
Examining donor-acceptor pairings in chr6
Examining donor-acceptor pairings in chr7
Examining donor-acceptor pairings in chr8
Examining donor-acceptor pairings in chr9
Examining donor-acceptor pairings in chrX
Examining donor-acceptor pairings in chrY
	found 5004 potential junctions
Reported 5004 total potential splices
Reporting 0 potential deletions...
Reporting 0 potential insertions...
Reporting potential fusions...