/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3922-AR14-UT-1/L3922-AR14-UT-1.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3922-AR14-UT-1/L3922-AR14-UT-1.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3923-AR14-UT-2/L3923-AR14-UT-2.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3923-AR14-UT-2/L3923-AR14-UT-2.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3925-AR14-AS-1/L3925-AR14-AS-1.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3925-AR14-AS-1/L3925-AR14-AS-1.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3926-AR14-AS-2/L3926-AR14-AS-2.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3926-AR14-AS-2/L3926-AR14-AS-2.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3927-AR14-AS-3/L3927-AR14-AS-3.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3927-AR14-AS-3/L3927-AR14-AS-3.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3928-AR14-HS-1/L3928-AR14-HS-1.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3928-AR14-HS-1/L3928-AR14-HS-1.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3929-AR14-HS-2/L3929-AR14-HS-2.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3929-AR14-HS-2/L3929-AR14-HS-2.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3931-DC-SIGN-UT-1/L3931-DC-SIGN-UT-1.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3931-DC-SIGN-UT-1/L3931-DC-SIGN-UT-1.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3932-DC-SIGN-UT-2/L3932-DC-SIGN-UT-2.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3932-DC-SIGN-UT-2/L3932-DC-SIGN-UT-2.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3933-DC-SIGN-UT-3/L3933-DC-SIGN-UT-3.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3933-DC-SIGN-UT-3/L3933-DC-SIGN-UT-3.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3934-DC-SIGN-AS-1/L3934-DC-SIGN-AS-1.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3934-DC-SIGN-AS-1/L3934-DC-SIGN-AS-1.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3935-DC-SIGN-AS-2/L3935-DC-SIGN-AS-2.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3935-DC-SIGN-AS-2/L3935-DC-SIGN-AS-2.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3936-DC-SIGN-AS-3/L3936-DC-SIGN-AS-3.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3936-DC-SIGN-AS-3/L3936-DC-SIGN-AS-3.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3937-DC-SIGN-HS-1/L3937-DC-SIGN-HS-1.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3937-DC-SIGN-HS-1/L3937-DC-SIGN-HS-1.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3938-DC-SIGN-HS-2/L3938-DC-SIGN-HS-2.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3938-DC-SIGN-HS-2/L3938-DC-SIGN-HS-2.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3939-DC-SIGN-HS-3/L3939-DC-SIGN-HS-3.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3939-DC-SIGN-HS-3/L3939-DC-SIGN-HS-3.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3940-THP_1_M2-UT-1/L3940-THP_1_M2-UT-1.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3940-THP_1_M2-UT-1/L3940-THP_1_M2-UT-1.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3941-THP_1_M2-UT-2/L3941-THP_1_M2-UT-2.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3941-THP_1_M2-UT-2/L3941-THP_1_M2-UT-2.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3942-THP_1_M2-UT-3/L3942-THP_1_M2-UT-3.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3942-THP_1_M2-UT-3/L3942-THP_1_M2-UT-3.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3943-THP_1_M2-AS-1/L3943-THP_1_M2-AS-1.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3943-THP_1_M2-AS-1/L3943-THP_1_M2-AS-1.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3944-THP_1_M2-AS-2/L3944-THP_1_M2-AS-2.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3944-THP_1_M2-AS-2/L3944-THP_1_M2-AS-2.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3945-THP_1_M2-AS-3/L3945-THP_1_M2-AS-3.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3945-THP_1_M2-AS-3/L3945-THP_1_M2-AS-3.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3946-THP_1_M2-HS-1/L3946-THP_1_M2-HS-1.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3946-THP_1_M2-HS-1/L3946-THP_1_M2-HS-1.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3947-THP_1_M2-HS-2/L3947-THP_1_M2-HS-2.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3947-THP_1_M2-HS-2/L3947-THP_1_M2-HS-2.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3948-THP_1_M2-HS-3/L3948-THP_1_M2-HS-3.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3948-THP_1_M2-HS-3/L3948-THP_1_M2-HS-3.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3982-MDM-M2-UT-2/L3982-MDM-M2-UT-2.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3982-MDM-M2-UT-2/L3982-MDM-M2-UT-2.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3984-MDM-M2-AS-1/L3984-MDM-M2-AS-1.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3984-MDM-M2-AS-1/L3984-MDM-M2-AS-1.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3985-MDM-M2-AS-2/L3985-MDM-M2-AS-2.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3985-MDM-M2-AS-2/L3985-MDM-M2-AS-2.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3986-MDM-M2-AS-3/L3986-MDM-M2-AS-3.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3986-MDM-M2-AS-3/L3986-MDM-M2-AS-3.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3987-MDM-M2-HS-1/L3987-MDM-M2-HS-1.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3987-MDM-M2-HS-1/L3987-MDM-M2-HS-1.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3988-MDM-M2-HS-2/L3988-MDM-M2-HS-2.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3988-MDM-M2-HS-2/L3988-MDM-M2-HS-2.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3989-MDM-M2-HS-3/L3989-MDM-M2-HS-3.2x36mers.hg38-male.unique.dedup.bam -n /oak/stanford/groups/wjg/marinovg/ENCODE4/datasets-ATAC/L3989-MDM-M2-HS-3/L3989-MDM-M2-HS-3.2x36mers.hg38-male.unique.dedup.MACS-2.1.0 -g hs -f BAMPE --keep-dup all --nomodel