## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[L4174-K562_4p_FA.2x36mers.hg38-male.unique.bam] OUTPUT=L4174-K562_4p_FA.2x36mers.hg38-male.unique.dedup.bam METRICS_FILE=L4174-K562_4p_FA.2x36mers.hg38-male.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Sep 15 18:47:08 PDT 2025

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	98546	3603360	0	4368	1130	0.044324	1432736

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.011205
2.0	1.955196
3.0	2.836441
4.0	3.659109
5.0	4.427095
6.0	5.144034
7.0	5.813318
8.0	6.438115
9.0	7.021382
10.0	7.565879
11.0	8.074184
12.0	8.548702
13.0	8.991679
14.0	9.405212
15.0	9.791257
16.0	10.151642
17.0	10.488073
18.0	10.802141
19.0	11.095333
20.0	11.369036
21.0	11.624547
22.0	11.863074
23.0	12.085747
24.0	12.293618
25.0	12.487672
26.0	12.668828
27.0	12.837942
28.0	12.995815
29.0	13.143195
30.0	13.280778
31.0	13.409216
32.0	13.529117
33.0	13.641049
34.0	13.74554
35.0	13.843085
36.0	13.934147
37.0	14.019156
38.0	14.098515
39.0	14.172599
40.0	14.241758
41.0	14.30632
42.0	14.366591
43.0	14.422856
44.0	14.475381
45.0	14.524414
46.0	14.570188
47.0	14.61292
48.0	14.652811
49.0	14.690051
50.0	14.724816
51.0	14.757269
52.0	14.787566
53.0	14.815849
54.0	14.842251
55.0	14.866899
56.0	14.889909
57.0	14.911389
58.0	14.931441
59.0	14.95016
60.0	14.967635
61.0	14.983949
62.0	14.999178
63.0	15.013395
64.0	15.026667
65.0	15.039057
66.0	15.050623
67.0	15.06142
68.0	15.0715
69.0	15.08091
70.0	15.089694
71.0	15.097895
72.0	15.10555
73.0	15.112696
74.0	15.119368
75.0	15.125596
76.0	15.13141
77.0	15.136837
78.0	15.141904
79.0	15.146634
80.0	15.15105
81.0	15.155172
82.0	15.15902
83.0	15.162612
84.0	15.165966
85.0	15.169096
86.0	15.172019
87.0	15.174747
88.0	15.177294
89.0	15.179672
90.0	15.181891
91.0	15.183964
92.0	15.185898
93.0	15.187704
94.0	15.189389
95.0	15.190963
96.0	15.192432
97.0	15.193804
98.0	15.195084
99.0	15.196279
100.0	15.197395