## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[L4173-K562_2p_FA.2x36mers.hg38-male.unique.bam] OUTPUT=L4173-K562_2p_FA.2x36mers.hg38-male.unique.dedup.bam METRICS_FILE=L4173-K562_2p_FA.2x36mers.hg38-male.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Sep 15 18:45:09 PDT 2025

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	240619	2339628	0	11848	2873	0.04924	3069165

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.011617
2.0	1.946953
3.0	2.811761
4.0	3.611359
5.0	4.350663
6.0	5.034221
7.0	5.666235
8.0	6.250593
9.0	6.790888
10.0	7.290442
11.0	7.752327
12.0	8.179384
13.0	8.574239
14.0	8.939321
15.0	9.276873
16.0	9.588973
17.0	9.877539
18.0	10.144346
19.0	10.391034
20.0	10.619121
21.0	10.830009
22.0	11.024996
23.0	11.205279
24.0	11.371968
25.0	11.526089
26.0	11.668587
27.0	11.800341
28.0	11.92216
29.0	12.034794
30.0	12.138934
31.0	12.235221
32.0	12.324249
33.0	12.406563
34.0	12.48267
35.0	12.553038
36.0	12.618101
37.0	12.678257
38.0	12.733877
39.0	12.785303
40.0	12.832852
41.0	12.876815
42.0	12.917463
43.0	12.955046
44.0	12.989795
45.0	13.021924
46.0	13.051631
47.0	13.079097
48.0	13.104492
49.0	13.127972
50.0	13.149682
51.0	13.169755
52.0	13.188314
53.0	13.205474
54.0	13.221339
55.0	13.236009
56.0	13.249572
57.0	13.262113
58.0	13.273708
59.0	13.284428
60.0	13.294341
61.0	13.303506
62.0	13.311979
63.0	13.319814
64.0	13.327058
65.0	13.333756
66.0	13.339949
67.0	13.345674
68.0	13.350969
69.0	13.355863
70.0	13.360389
71.0	13.364574
72.0	13.368443
73.0	13.37202
74.0	13.375327
75.0	13.378385
76.0	13.381213
77.0	13.383827
78.0	13.386244
79.0	13.388479
80.0	13.390546
81.0	13.392456
82.0	13.394223
83.0	13.395856
84.0	13.397366
85.0	13.398762
86.0	13.400053
87.0	13.401247
88.0	13.402351
89.0	13.403371
90.0	13.404314
91.0	13.405187
92.0	13.405993
93.0	13.406739
94.0	13.407429
95.0	13.408066
96.0	13.408656
97.0	13.409201
98.0	13.409704
99.0	13.41017
100.0	13.410601