## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[L4172-K562_2p_FA.2x36mers.hg38-male.unique.bam] OUTPUT=L4172-K562_2p_FA.2x36mers.hg38-male.unique.dedup.bam METRICS_FILE=L4172-K562_2p_FA.2x36mers.hg38-male.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Sep 15 18:45:10 PDT 2025

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	280070	3806056	0	14789	3458	0.052805	3283473

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.011976
2.0	1.941212
3.0	2.794474
4.0	3.577972
5.0	4.297412
6.0	4.958029
7.0	5.564635
8.0	6.121644
9.0	6.633112
10.0	7.102762
11.0	7.534014
12.0	7.930006
13.0	8.293621
14.0	8.627508
15.0	8.934095
16.0	9.215616
17.0	9.47412
18.0	9.711488
19.0	9.929449
20.0	10.129589
21.0	10.313366
22.0	10.482117
23.0	10.637072
24.0	10.779356
25.0	10.910008
26.0	11.029978
27.0	11.140138
28.0	11.241292
29.0	11.334176
30.0	11.419466
31.0	11.497782
32.0	11.569695
33.0	11.635728
34.0	11.696362
35.0	11.752039
36.0	11.803164
37.0	11.850109
38.0	11.893215
39.0	11.932798
40.0	11.969144
41.0	12.002518
42.0	12.033163
43.0	12.061303
44.0	12.087143
45.0	12.110869
46.0	12.132656
47.0	12.152661
48.0	12.171031
49.0	12.187899
50.0	12.203388
51.0	12.21761
52.0	12.23067
53.0	12.242661
54.0	12.253673
55.0	12.263784
56.0	12.273068
57.0	12.281593
58.0	12.289422
59.0	12.29661
60.0	12.30321
61.0	12.309271
62.0	12.314836
63.0	12.319947
64.0	12.324639
65.0	12.328948
66.0	12.332904
67.0	12.336537
68.0	12.339873
69.0	12.342937
70.0	12.345749
71.0	12.348332
72.0	12.350704
73.0	12.352882
74.0	12.354881
75.0	12.356718
76.0	12.358404
77.0	12.359952
78.0	12.361373
79.0	12.362679
80.0	12.363877
81.0	12.364978
82.0	12.365989
83.0	12.366917
84.0	12.367769
85.0	12.368551
86.0	12.36927
87.0	12.36993
88.0	12.370536
89.0	12.371092
90.0	12.371603
91.0	12.372072
92.0	12.372502
93.0	12.372898
94.0	12.373261
95.0	12.373595
96.0	12.373901
97.0	12.374182
98.0	12.37444
99.0	12.374677
100.0	12.374895