## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[L4165-K562_0.5p_FA.2x36mers.hg38-male.unique.bam] OUTPUT=L4165-K562_0.5p_FA.2x36mers.hg38-male.unique.dedup.bam METRICS_FILE=L4165-K562_0.5p_FA.2x36mers.hg38-male.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Sep 15 18:45:10 PDT 2025

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	9421679	10948090	0	533147	116606	0.056587	100807204

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.011955
2.0	1.933616
3.0	2.773039
4.0	3.537562
5.0	4.233868
6.0	4.868045
7.0	5.445636
8.0	5.971689
9.0	6.450804
10.0	6.887169
11.0	7.284598
12.0	7.646565
13.0	7.976235
14.0	8.276489
15.0	8.549952
16.0	8.799014
17.0	9.025853
18.0	9.232452
19.0	9.420617
20.0	9.591992
21.0	9.748076
22.0	9.890232
23.0	10.019705
24.0	10.137625
25.0	10.245023
26.0	10.342838
27.0	10.431925
28.0	10.513064
29.0	10.586962
30.0	10.654267
31.0	10.715566
32.0	10.771396
33.0	10.822244
34.0	10.868555
35.0	10.910734
36.0	10.94915
37.0	10.984137
38.0	11.016003
39.0	11.045025
40.0	11.071458
41.0	11.095533
42.0	11.117459
43.0	11.137429
44.0	11.155616
45.0	11.172182
46.0	11.187269
47.0	11.201009
48.0	11.213524
49.0	11.224922
50.0	11.235303
51.0	11.244758
52.0	11.253369
53.0	11.261212
54.0	11.268355
55.0	11.274861
56.0	11.280786
57.0	11.286182
58.0	11.291097
59.0	11.295574
60.0	11.299651
61.0	11.303364
62.0	11.306746
63.0	11.309826
64.0	11.312631
65.0	11.315186
66.0	11.317513
67.0	11.319633
68.0	11.321563
69.0	11.323321
70.0	11.324922
71.0	11.32638
72.0	11.327709
73.0	11.328918
74.0	11.33002
75.0	11.331024
76.0	11.331937
77.0	11.33277
78.0	11.333528
79.0	11.334218
80.0	11.334847
81.0	11.33542
82.0	11.335941
83.0	11.336417
84.0	11.336849
85.0	11.337243
86.0	11.337602
87.0	11.337929
88.0	11.338227
89.0	11.338498
90.0	11.338745
91.0	11.33897
92.0	11.339175
93.0	11.339361
94.0	11.339531
95.0	11.339686
96.0	11.339827
97.0	11.339955
98.0	11.340072
99.0	11.340179
100.0	11.340276