## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[L4163-K562_0.5p_FA.2x36mers.hg38-male.unique.bam] OUTPUT=L4163-K562_0.5p_FA.2x36mers.hg38-male.unique.dedup.bam METRICS_FILE=L4163-K562_0.5p_FA.2x36mers.hg38-male.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Sep 15 18:45:10 PDT 2025

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	7100890	8467996	0	376987	85050	0.05309	81947251

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.011605
2.0	1.939243
3.0	2.789883
4.0	3.569917
5.0	4.285206
6.0	4.941122
7.0	5.542595
8.0	6.094144
9.0	6.599912
10.0	7.063699
11.0	7.48899
12.0	7.87898
13.0	8.2366
14.0	8.564536
15.0	8.865252
16.0	9.141007
17.0	9.393874
18.0	9.625751
19.0	9.838382
20.0	10.033364
21.0	10.212162
22.0	10.376118
23.0	10.526466
24.0	10.664334
25.0	10.790759
26.0	10.90669
27.0	11.012998
28.0	11.110482
29.0	11.199875
30.0	11.281848
31.0	11.357016
32.0	11.425946
33.0	11.489154
34.0	11.547115
35.0	11.600266
36.0	11.649004
37.0	11.693698
38.0	11.734681
39.0	11.772263
40.0	11.806725
41.0	11.838327
42.0	11.867306
43.0	11.893879
44.0	11.918247
45.0	11.940592
46.0	11.961083
47.0	11.979872
48.0	11.997102
49.0	12.012902
50.0	12.02739
51.0	12.040676
52.0	12.052859
53.0	12.064031
54.0	12.074275
55.0	12.08367
56.0	12.092284
57.0	12.100183
58.0	12.107427
59.0	12.11407
60.0	12.120161
61.0	12.125746
62.0	12.130868
63.0	12.135565
64.0	12.139872
65.0	12.143821
66.0	12.147443
67.0	12.150764
68.0	12.153809
69.0	12.156602
70.0	12.159162
71.0	12.161511
72.0	12.163664
73.0	12.165639
74.0	12.167449
75.0	12.16911
76.0	12.170632
77.0	12.172028
78.0	12.173309
79.0	12.174483
80.0	12.175559
81.0	12.176546
82.0	12.177452
83.0	12.178282
84.0	12.179043
85.0	12.179741
86.0	12.180381
87.0	12.180968
88.0	12.181506
89.0	12.182
90.0	12.182453
91.0	12.182868
92.0	12.183248
93.0	12.183597
94.0	12.183917
95.0	12.184211
96.0	12.18448
97.0	12.184727
98.0	12.184953
99.0	12.18516
100.0	12.185351