## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[L4159-K562_0.2p_FA.2x36mers.hg38-male.unique.bam] OUTPUT=L4159-K562_0.2p_FA.2x36mers.hg38-male.unique.dedup.bam METRICS_FILE=L4159-K562_0.2p_FA.2x36mers.hg38-male.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Sep 15 18:47:08 PDT 2025

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	12053814	12575920	0	707638	165698	0.058707	126396606

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.013284
2.0	1.934401
3.0	2.771734
4.0	3.532905
5.0	4.224839
6.0	4.853837
7.0	5.425621
8.0	5.945397
9.0	6.417894
10.0	6.847413
11.0	7.237864
12.0	7.5928
13.0	7.915451
14.0	8.208754
15.0	8.475379
16.0	8.717752
17.0	8.938078
18.0	9.138365
19.0	9.320433
20.0	9.48594
21.0	9.636394
22.0	9.773162
23.0	9.897489
24.0	10.010509
25.0	10.113248
26.0	10.206641
27.0	10.29154
28.0	10.368717
29.0	10.438874
30.0	10.502649
31.0	10.560624
32.0	10.613325
33.0	10.661232
34.0	10.704782
35.0	10.744371
36.0	10.780358
37.0	10.813073
38.0	10.842811
39.0	10.869845
40.0	10.894419
41.0	10.916759
42.0	10.937066
43.0	10.955527
44.0	10.972308
45.0	10.987562
46.0	11.00143
47.0	11.014036
48.0	11.025495
49.0	11.035912
50.0	11.045381
51.0	11.053989
52.0	11.061814
53.0	11.068928
54.0	11.075394
55.0	11.081272
56.0	11.086616
57.0	11.091473
58.0	11.095889
59.0	11.099903
60.0	11.103551
61.0	11.106868
62.0	11.109884
63.0	11.112625
64.0	11.115116
65.0	11.117381
66.0	11.11944
67.0	11.121312
68.0	11.123014
69.0	11.12456
70.0	11.125966
71.0	11.127244
72.0	11.128406
73.0	11.129463
74.0	11.130423
75.0	11.131295
76.0	11.132089
77.0	11.13281
78.0	11.133466
79.0	11.134062
80.0	11.134604
81.0	11.135096
82.0	11.135544
83.0	11.135951
84.0	11.136321
85.0	11.136657
86.0	11.136963
87.0	11.137241
88.0	11.137493
89.0	11.137723
90.0	11.137932
91.0	11.138121
92.0	11.138294
93.0	11.138451
94.0	11.138593
95.0	11.138723
96.0	11.138841
97.0	11.138948
98.0	11.139045
99.0	11.139134
100.0	11.139214