## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[L4158-K562_0.2p_FA.2x36mers.hg38-male.unique.bam] OUTPUT=L4158-K562_0.2p_FA.2x36mers.hg38-male.unique.dedup.bam METRICS_FILE=L4158-K562_0.2p_FA.2x36mers.hg38-male.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Sep 15 18:46:18 PDT 2025

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	9312850	9960716	0	483394	123950	0.051906	114370096

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.012947
2.0	1.946682
3.0	2.807398
4.0	3.600807
5.0	4.33217
6.0	5.00634
7.0	5.627791
8.0	6.200643
9.0	6.728698
10.0	7.21546
11.0	7.664156
12.0	8.077764
13.0	8.459028
14.0	8.810477
15.0	9.134443
16.0	9.433074
17.0	9.708352
18.0	9.962104
19.0	10.196012
20.0	10.411628
21.0	10.610383
22.0	10.793596
23.0	10.962481
24.0	11.118159
25.0	11.261663
26.0	11.393945
27.0	11.515883
28.0	11.628285
29.0	11.731897
30.0	11.827407
31.0	11.915448
32.0	11.996604
33.0	12.071413
34.0	12.140373
35.0	12.203939
36.0	12.262535
37.0	12.316549
38.0	12.366338
39.0	12.412235
40.0	12.454542
41.0	12.49354
42.0	12.529489
43.0	12.562627
44.0	12.593173
45.0	12.621331
46.0	12.647287
47.0	12.671213
48.0	12.693268
49.0	12.713598
50.0	12.732338
51.0	12.749613
52.0	12.765537
53.0	12.780216
54.0	12.793747
55.0	12.806219
56.0	12.817717
57.0	12.828315
58.0	12.838084
59.0	12.84709
60.0	12.855391
61.0	12.863043
62.0	12.870097
63.0	12.876599
64.0	12.882593
65.0	12.888118
66.0	12.893211
67.0	12.897905
68.0	12.902233
69.0	12.906222
70.0	12.909899
71.0	12.913288
72.0	12.916413
73.0	12.919293
74.0	12.921948
75.0	12.924395
76.0	12.926651
77.0	12.928731
78.0	12.930648
79.0	12.932415
80.0	12.934044
81.0	12.935545
82.0	12.936929
83.0	12.938205
84.0	12.939381
85.0	12.940465
86.0	12.941464
87.0	12.942386
88.0	12.943235
89.0	12.944017
90.0	12.944739
91.0	12.945404
92.0	12.946017
93.0	12.946582
94.0	12.947103
95.0	12.947583
96.0	12.948026
97.0	12.948434
98.0	12.94881
99.0	12.949157
100.0	12.949476