## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[stim_BAF170_S586E_2.2x36mers.hg38+mm10.unique.nochrM.bam] OUTPUT=stim_BAF170_S586E_2.2x36mers.hg38+mm10.unique.nochrM.dedup.bam METRICS_FILE=stim_BAF170_S586E_2.2x36mers.hg38+mm10.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu May 27 19:43:31 PDT 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	998289	0	0	112266	13251	0.112458	4565598

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.012036
2.0	1.825307
3.0	2.478851
4.0	3.004038
5.0	3.426079
6.0	3.76523
7.0	4.037772
8.0	4.256786
9.0	4.432786
10.0	4.574219
11.0	4.687875
12.0	4.779208
13.0	4.852604
14.0	4.911584
15.0	4.958981
16.0	4.997069
17.0	5.027677
18.0	5.052273
19.0	5.072038
20.0	5.087922
21.0	5.100686
22.0	5.110943
23.0	5.119186
24.0	5.125809
25.0	5.131132
26.0	5.13541
27.0	5.138847
28.0	5.141609
29.0	5.143829
30.0	5.145613
31.0	5.147046
32.0	5.148198
33.0	5.149124
34.0	5.149868
35.0	5.150465
36.0	5.150946
37.0	5.151332
38.0	5.151642
39.0	5.151891
40.0	5.152092
41.0	5.152253
42.0	5.152382
43.0	5.152486
44.0	5.15257
45.0	5.152637
46.0	5.152691
47.0	5.152734
48.0	5.152769
49.0	5.152797
50.0	5.152819
51.0	5.152837
52.0	5.152852
53.0	5.152864
54.0	5.152873
55.0	5.152881
56.0	5.152887
57.0	5.152891
58.0	5.152895
59.0	5.152899
60.0	5.152901
61.0	5.152903
62.0	5.152905
63.0	5.152906
64.0	5.152907
65.0	5.152908
66.0	5.152909
67.0	5.152909
68.0	5.15291
69.0	5.15291
70.0	5.15291
71.0	5.15291
72.0	5.152911
73.0	5.152911
74.0	5.152911
75.0	5.152911
76.0	5.152911
77.0	5.152911
78.0	5.152911
79.0	5.152911
80.0	5.152911
81.0	5.152911
82.0	5.152911
83.0	5.152911
84.0	5.152911
85.0	5.152911
86.0	5.152911
87.0	5.152911
88.0	5.152911
89.0	5.152911
90.0	5.152911
91.0	5.152911
92.0	5.152911
93.0	5.152911
94.0	5.152911
95.0	5.152911
96.0	5.152911
97.0	5.152911
98.0	5.152911
99.0	5.152911
100.0	5.152911