## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[stim_BAF170_S586E_1.2x36mers.hg38+mm10.unique.nochrM.bam] OUTPUT=stim_BAF170_S586E_1.2x36mers.hg38+mm10.unique.nochrM.dedup.bam METRICS_FILE=stim_BAF170_S586E_1.2x36mers.hg38+mm10.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu May 27 19:43:31 PDT 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	1231480	0	0	158373	17921	0.128604	4829962

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.012966
2.0	1.797956
3.0	2.406277
4.0	2.877692
5.0	3.24301
6.0	3.526111
7.0	3.745498
8.0	3.91551
9.0	4.04726
10.0	4.149358
11.0	4.228478
12.0	4.289792
13.0	4.337307
14.0	4.374128
15.0	4.402662
16.0	4.424774
17.0	4.44191
18.0	4.455189
19.0	4.46548
20.0	4.473455
21.0	4.479634
22.0	4.484424
23.0	4.488135
24.0	4.491011
25.0	4.493239
26.0	4.494967
27.0	4.496305
28.0	4.497342
29.0	4.498146
30.0	4.498769
31.0	4.499252
32.0	4.499626
33.0	4.499916
34.0	4.50014
35.0	4.500314
36.0	4.500449
37.0	4.500554
38.0	4.500635
39.0	4.500698
40.0	4.500746
41.0	4.500784
42.0	4.500813
43.0	4.500836
44.0	4.500853
45.0	4.500867
46.0	4.500877
47.0	4.500886
48.0	4.500892
49.0	4.500897
50.0	4.500901
51.0	4.500904
52.0	4.500906
53.0	4.500908
54.0	4.500909
55.0	4.50091
56.0	4.500911
57.0	4.500912
58.0	4.500912
59.0	4.500912
60.0	4.500913
61.0	4.500913
62.0	4.500913
63.0	4.500913
64.0	4.500913
65.0	4.500913
66.0	4.500913
67.0	4.500914
68.0	4.500914
69.0	4.500914
70.0	4.500914
71.0	4.500914
72.0	4.500914
73.0	4.500914
74.0	4.500914
75.0	4.500914
76.0	4.500914
77.0	4.500914
78.0	4.500914
79.0	4.500914
80.0	4.500914
81.0	4.500914
82.0	4.500914
83.0	4.500914
84.0	4.500914
85.0	4.500914
86.0	4.500914
87.0	4.500914
88.0	4.500914
89.0	4.500914
90.0	4.500914
91.0	4.500914
92.0	4.500914
93.0	4.500914
94.0	4.500914
95.0	4.500914
96.0	4.500914
97.0	4.500914
98.0	4.500914
99.0	4.500914
100.0	4.500914