## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[stim_BAF170KO_1.2x36mers.hg38+mm10.unique.nochrM.bam] OUTPUT=stim_BAF170KO_1.2x36mers.hg38+mm10.unique.nochrM.dedup.bam METRICS_FILE=stim_BAF170KO_1.2x36mers.hg38+mm10.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu May 27 19:43:32 PDT 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	986899	0	0	116992	14424	0.118545	4279947

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.013189
2.0	1.817729
3.0	2.456588
4.0	2.963886
5.0	3.366714
6.0	3.686587
7.0	3.940588
8.0	4.142282
9.0	4.30244
10.0	4.429617
11.0	4.530604
12.0	4.610794
13.0	4.674471
14.0	4.725034
15.0	4.765185
16.0	4.797068
17.0	4.822384
18.0	4.842488
19.0	4.858451
20.0	4.871127
21.0	4.881193
22.0	4.889185
23.0	4.895532
24.0	4.900572
25.0	4.904574
26.0	4.907752
27.0	4.910275
28.0	4.912279
29.0	4.91387
30.0	4.915133
31.0	4.916137
32.0	4.916933
33.0	4.917566
34.0	4.918068
35.0	4.918467
36.0	4.918784
37.0	4.919035
38.0	4.919235
39.0	4.919394
40.0	4.91952
41.0	4.91962
42.0	4.919699
43.0	4.919762
44.0	4.919812
45.0	4.919852
46.0	4.919884
47.0	4.919909
48.0	4.919928
49.0	4.919944
50.0	4.919957
51.0	4.919967
52.0	4.919975
53.0	4.919981
54.0	4.919986
55.0	4.91999
56.0	4.919993
57.0	4.919996
58.0	4.919998
59.0	4.919999
60.0	4.92
61.0	4.920001
62.0	4.920002
63.0	4.920003
64.0	4.920003
65.0	4.920004
66.0	4.920004
67.0	4.920004
68.0	4.920004
69.0	4.920005
70.0	4.920005
71.0	4.920005
72.0	4.920005
73.0	4.920005
74.0	4.920005
75.0	4.920005
76.0	4.920005
77.0	4.920005
78.0	4.920005
79.0	4.920005
80.0	4.920005
81.0	4.920005
82.0	4.920005
83.0	4.920005
84.0	4.920005
85.0	4.920005
86.0	4.920005
87.0	4.920005
88.0	4.920005
89.0	4.920005
90.0	4.920005
91.0	4.920005
92.0	4.920005
93.0	4.920005
94.0	4.920005
95.0	4.920005
96.0	4.920005
97.0	4.920005
98.0	4.920005
99.0	4.920005
100.0	4.920005