## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[SL5.2x36mers.hg38-male.unique.nochrM.bam] OUTPUT=SL5.2x36mers.hg38-male.unique.nochrM.dedup.bam METRICS_FILE=SL5.2x36mers.hg38-male.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Apr 14 01:38:53 PDT 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	5884087	0	0	271964	54997	0.04622	76347570

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.009076
2.0	1.943304
3.0	2.808236
4.0	3.609012
5.0	4.350391
6.0	5.036778
7.0	5.672252
8.0	6.260591
9.0	6.805289
10.0	7.309585
11.0	7.776475
12.0	8.208733
13.0	8.608929
14.0	8.97944
15.0	9.322469
16.0	9.640053
17.0	9.934081
18.0	10.2063
19.0	10.458326
20.0	10.691659
21.0	10.907684
22.0	11.107686
23.0	11.292853
24.0	11.464285
25.0	11.623001
26.0	11.769944
27.0	11.905988
28.0	12.031941
29.0	12.148551
30.0	12.256512
31.0	12.356465
32.0	12.449004
33.0	12.534678
34.0	12.613998
35.0	12.687435
36.0	12.755424
37.0	12.81837
38.0	12.876647
39.0	12.930602
40.0	12.980554
41.0	13.026801
42.0	13.069618
43.0	13.109259
44.0	13.14596
45.0	13.179938
46.0	13.211396
47.0	13.24052
48.0	13.267485
49.0	13.292449
50.0	13.315561
51.0	13.33696
52.0	13.356771
53.0	13.375112
54.0	13.392093
55.0	13.407814
56.0	13.42237
57.0	13.435845
58.0	13.448321
59.0	13.459872
60.0	13.470566
61.0	13.480467
62.0	13.489633
63.0	13.49812
64.0	13.505976
65.0	13.513251
66.0	13.519985
67.0	13.52622
68.0	13.531993
69.0	13.537337
70.0	13.542285
71.0	13.546866
72.0	13.551107
73.0	13.555034
74.0	13.558669
75.0	13.562035
76.0	13.565151
77.0	13.568036
78.0	13.570707
79.0	13.57318
80.0	13.575469
81.0	13.577589
82.0	13.579551
83.0	13.581368
84.0	13.58305
85.0	13.584607
86.0	13.586049
87.0	13.587384
88.0	13.588619
89.0	13.589764
90.0	13.590823
91.0	13.591803
92.0	13.592711
93.0	13.593552
94.0	13.59433
95.0	13.595051
96.0	13.595718
97.0	13.596336
98.0	13.596907
99.0	13.597437
100.0	13.597927