## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[NT-2.2x36mers.hg38-male.unique.nochrM.bam] OUTPUT=NT-2.2x36mers.hg38-male.unique.nochrM.dedup.bam METRICS_FILE=NT-2.2x36mers.hg38-male.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Tue Mar 02 03:13:48 PST 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	7994431	0	0	217017	94477	0.027146	252008394

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.011771
2.0	1.991948
3.0	2.94152
4.0	3.861442
5.0	4.752639
6.0	5.616008
7.0	6.452419
8.0	7.262713
9.0	8.047705
10.0	8.808186
11.0	9.544922
12.0	10.258652
13.0	10.950096
14.0	11.61995
15.0	12.268888
16.0	12.897563
17.0	13.506607
18.0	14.096634
19.0	14.668237
20.0	15.221992
21.0	15.758456
22.0	16.278169
23.0	16.781654
24.0	17.269418
25.0	17.741951
26.0	18.199729
27.0	18.643214
28.0	19.07285
29.0	19.489071
30.0	19.892296
31.0	20.28293
32.0	20.661366
33.0	21.027986
34.0	21.383158
35.0	21.727239
36.0	22.060577
37.0	22.383507
38.0	22.696352
39.0	22.99943
40.0	23.293043
41.0	23.577489
42.0	23.853053
43.0	24.120012
44.0	24.378636
45.0	24.629184
46.0	24.871908
47.0	25.107054
48.0	25.334857
49.0	25.555547
50.0	25.769346
51.0	25.976469
52.0	26.177125
53.0	26.371515
54.0	26.559835
55.0	26.742275
56.0	26.919019
57.0	27.090243
58.0	27.256121
59.0	27.41682
60.0	27.572501
61.0	27.72332
62.0	27.869431
63.0	28.010978
64.0	28.148107
65.0	28.280953
66.0	28.409651
67.0	28.534331
68.0	28.655117
69.0	28.772132
70.0	28.885493
71.0	28.995315
72.0	29.101707
73.0	29.204777
74.0	29.304629
75.0	29.401363
76.0	29.495076
77.0	29.585864
78.0	29.673816
79.0	29.759022
80.0	29.841568
81.0	29.921536
82.0	29.999007
83.0	30.074059
84.0	30.146767
85.0	30.217205
86.0	30.285444
87.0	30.351552
88.0	30.415596
89.0	30.47764
90.0	30.537747
91.0	30.595976
92.0	30.652388
93.0	30.707038
94.0	30.759982
95.0	30.811272
96.0	30.860961
97.0	30.909099
98.0	30.955733
99.0	31.000912
100.0	31.044679