## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[ATXN2-2.2x36mers.hg38-male.unique.nochrM.bam] OUTPUT=ATXN2-2.2x36mers.hg38-male.unique.nochrM.dedup.bam METRICS_FILE=ATXN2-2.2x36mers.hg38-male.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Tue Mar 02 03:13:50 PST 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	13409605	0	0	475762	165144	0.035479	277933418

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.012171
2.0	1.976666
3.0	2.895731
4.0	3.771507
5.0	4.606031
6.0	5.401248
7.0	6.159008
8.0	6.881076
9.0	7.569134
10.0	8.224782
11.0	8.849548
12.0	9.444886
13.0	10.012182
14.0	10.552758
15.0	11.067871
16.0	11.558721
17.0	12.026451
18.0	12.47215
19.0	12.896856
20.0	13.301557
21.0	13.687196
22.0	14.054671
23.0	14.404836
24.0	14.738509
25.0	15.056464
26.0	15.359443
27.0	15.648151
28.0	15.923261
29.0	16.185412
30.0	16.435215
31.0	16.673252
32.0	16.900077
33.0	17.116218
34.0	17.322178
35.0	17.518437
36.0	17.705452
37.0	17.883658
38.0	18.053471
39.0	18.215284
40.0	18.369476
41.0	18.516405
42.0	18.656414
43.0	18.789828
44.0	18.916957
45.0	19.038099
46.0	19.153535
47.0	19.263533
48.0	19.36835
49.0	19.46823
50.0	19.563406
51.0	19.654098
52.0	19.740519
53.0	19.822869
54.0	19.90134
55.0	19.976115
56.0	20.047369
57.0	20.115265
58.0	20.179964
59.0	20.241615
60.0	20.300363
61.0	20.356343
62.0	20.409687
63.0	20.460518
64.0	20.508954
65.0	20.555109
66.0	20.599091
67.0	20.641
68.0	20.680936
69.0	20.71899
70.0	20.755252
71.0	20.789806
72.0	20.822733
73.0	20.854108
74.0	20.884006
75.0	20.912496
76.0	20.939643
77.0	20.965512
78.0	20.990162
79.0	21.013652
80.0	21.036034
81.0	21.057363
82.0	21.077687
83.0	21.097054
84.0	21.115508
85.0	21.133093
86.0	21.14985
87.0	21.165818
88.0	21.181033
89.0	21.195532
90.0	21.209348
91.0	21.222513
92.0	21.235058
93.0	21.247013
94.0	21.258404
95.0	21.269258
96.0	21.279601
97.0	21.289457
98.0	21.298849
99.0	21.307799
100.0	21.316327