## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[Zacetecan_deer_mouse_ID_F967_Sample2421_Peromyscus_difficilis.2x36mers-trimmed.a.bam] OUTPUT=Zacetecan_deer_mouse_ID_F967_Sample2421_Peromyscus_difficilis.2x36mers-trimmed.a.dedup.bam METRICS_FILE=Zacetecan_deer_mouse_ID_F967_Sample2421_Peromyscus_difficilis.2x36mers-trimmed.a.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Jan 21 14:41:41 PST 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	22831160	0	0	6077698	1825411	0.266202	44615130

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.066669
2.0	1.706089
3.0	2.089391
4.0	2.319164
5.0	2.456902
6.0	2.539469
7.0	2.588965
8.0	2.618635
9.0	2.636421
10.0	2.647083
11.0	2.653474
12.0	2.657306
13.0	2.659602
14.0	2.660979
15.0	2.661804
16.0	2.662299
17.0	2.662596
18.0	2.662773
19.0	2.66288
20.0	2.662944
21.0	2.662982
22.0	2.663005
23.0	2.663019
24.0	2.663027
25.0	2.663032
26.0	2.663035
27.0	2.663037
28.0	2.663038
29.0	2.663038
30.0	2.663039
31.0	2.663039
32.0	2.663039
33.0	2.663039
34.0	2.663039
35.0	2.663039
36.0	2.663039
37.0	2.663039
38.0	2.663039
39.0	2.663039
40.0	2.663039
41.0	2.663039
42.0	2.663039
43.0	2.663039
44.0	2.663039
45.0	2.663039
46.0	2.663039
47.0	2.663039
48.0	2.663039
49.0	2.663039
50.0	2.663039
51.0	2.663039
52.0	2.663039
53.0	2.663039
54.0	2.663039
55.0	2.663039
56.0	2.663039
57.0	2.663039
58.0	2.663039
59.0	2.663039
60.0	2.663039
61.0	2.663039
62.0	2.663039
63.0	2.663039
64.0	2.663039
65.0	2.663039
66.0	2.663039
67.0	2.663039
68.0	2.663039
69.0	2.663039
70.0	2.663039
71.0	2.663039
72.0	2.663039
73.0	2.663039
74.0	2.663039
75.0	2.663039
76.0	2.663039
77.0	2.663039
78.0	2.663039
79.0	2.663039
80.0	2.663039
81.0	2.663039
82.0	2.663039
83.0	2.663039
84.0	2.663039
85.0	2.663039
86.0	2.663039
87.0	2.663039
88.0	2.663039
89.0	2.663039
90.0	2.663039
91.0	2.663039
92.0	2.663039
93.0	2.663039
94.0	2.663039
95.0	2.663039
96.0	2.663039
97.0	2.663039
98.0	2.663039
99.0	2.663039
100.0	2.663039