## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[Townsends_big-eared_bat_ID_2931_Sample2405_Plecotus_townsendii.2x36mers-trimmed.a.bam] OUTPUT=Townsends_big-eared_bat_ID_2931_Sample2405_Plecotus_townsendii.2x36mers-trimmed.a.dedup.bam METRICS_FILE=Townsends_big-eared_bat_ID_2931_Sample2405_Plecotus_townsendii.2x36mers-trimmed.a.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Jan 21 14:41:29 PST 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	9550346	0	0	1786696	340122	0.187082	26162419

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.03061
2.0	1.746027
3.0	2.242646
4.0	2.587384
5.0	2.82669
6.0	2.992809
7.0	3.108123
8.0	3.188171
9.0	3.243737
10.0	3.28231
11.0	3.309086
12.0	3.327673
13.0	3.340575
14.0	3.349532
15.0	3.355749
16.0	3.360065
17.0	3.363061
18.0	3.36514
19.0	3.366584
20.0	3.367586
21.0	3.368282
22.0	3.368765
23.0	3.3691
24.0	3.369333
25.0	3.369494
26.0	3.369606
27.0	3.369684
28.0	3.369738
29.0	3.369776
30.0	3.369802
31.0	3.36982
32.0	3.369832
33.0	3.369841
34.0	3.369847
35.0	3.369851
36.0	3.369854
37.0	3.369856
38.0	3.369858
39.0	3.369858
40.0	3.369859
41.0	3.36986
42.0	3.36986
43.0	3.36986
44.0	3.36986
45.0	3.36986
46.0	3.369861
47.0	3.369861
48.0	3.369861
49.0	3.369861
50.0	3.369861
51.0	3.369861
52.0	3.369861
53.0	3.369861
54.0	3.369861
55.0	3.369861
56.0	3.369861
57.0	3.369861
58.0	3.369861
59.0	3.369861
60.0	3.369861
61.0	3.369861
62.0	3.369861
63.0	3.369861
64.0	3.369861
65.0	3.369861
66.0	3.369861
67.0	3.369861
68.0	3.369861
69.0	3.369861
70.0	3.369861
71.0	3.369861
72.0	3.369861
73.0	3.369861
74.0	3.369861
75.0	3.369861
76.0	3.369861
77.0	3.369861
78.0	3.369861
79.0	3.369861
80.0	3.369861
81.0	3.369861
82.0	3.369861
83.0	3.369861
84.0	3.369861
85.0	3.369861
86.0	3.369861
87.0	3.369861
88.0	3.369861
89.0	3.369861
90.0	3.369861
91.0	3.369861
92.0	3.369861
93.0	3.369861
94.0	3.369861
95.0	3.369861
96.0	3.369861
97.0	3.369861
98.0	3.369861
99.0	3.369861
100.0	3.369861