## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[Myotis_lucifugus_Little_brown_batID_MLUC3_P4_Sample2423.2x36mers-trimmed.a.bam] OUTPUT=Myotis_lucifugus_Little_brown_batID_MLUC3_P4_Sample2423.2x36mers-trimmed.a.dedup.bam METRICS_FILE=Myotis_lucifugus_Little_brown_batID_MLUC3_P4_Sample2423.2x36mers-trimmed.a.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Jan 21 14:41:40 PST 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	77909305	0	0	30038423	13109320	0.385556	101318417

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.135505
2.0	1.661808
3.0	1.905748
4.0	2.018814
5.0	2.071219
6.0	2.095509
7.0	2.106767
8.0	2.111986
9.0	2.114404
10.0	2.115525
11.0	2.116045
12.0	2.116286
13.0	2.116397
14.0	2.116449
15.0	2.116473
16.0	2.116484
17.0	2.116489
18.0	2.116492
19.0	2.116493
20.0	2.116493
21.0	2.116493
22.0	2.116494
23.0	2.116494
24.0	2.116494
25.0	2.116494
26.0	2.116494
27.0	2.116494
28.0	2.116494
29.0	2.116494
30.0	2.116494
31.0	2.116494
32.0	2.116494
33.0	2.116494
34.0	2.116494
35.0	2.116494
36.0	2.116494
37.0	2.116494
38.0	2.116494
39.0	2.116494
40.0	2.116494
41.0	2.116494
42.0	2.116494
43.0	2.116494
44.0	2.116494
45.0	2.116494
46.0	2.116494
47.0	2.116494
48.0	2.116494
49.0	2.116494
50.0	2.116494
51.0	2.116494
52.0	2.116494
53.0	2.116494
54.0	2.116494
55.0	2.116494
56.0	2.116494
57.0	2.116494
58.0	2.116494
59.0	2.116494
60.0	2.116494
61.0	2.116494
62.0	2.116494
63.0	2.116494
64.0	2.116494
65.0	2.116494
66.0	2.116494
67.0	2.116494
68.0	2.116494
69.0	2.116494
70.0	2.116494
71.0	2.116494
72.0	2.116494
73.0	2.116494
74.0	2.116494
75.0	2.116494
76.0	2.116494
77.0	2.116494
78.0	2.116494
79.0	2.116494
80.0	2.116494
81.0	2.116494
82.0	2.116494
83.0	2.116494
84.0	2.116494
85.0	2.116494
86.0	2.116494
87.0	2.116494
88.0	2.116494
89.0	2.116494
90.0	2.116494
91.0	2.116494
92.0	2.116494
93.0	2.116494
94.0	2.116494
95.0	2.116494
96.0	2.116494
97.0	2.116494
98.0	2.116494
99.0	2.116494
100.0	2.116494