## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[Michoacan_Deer_Mouse_ID_TCH3380_Sample2401_Osgoodomys_banderanus.2x36mers-trimmed.a.bam] OUTPUT=Michoacan_Deer_Mouse_ID_TCH3380_Sample2401_Osgoodomys_banderanus.2x36mers-trimmed.a.dedup.bam METRICS_FILE=Michoacan_Deer_Mouse_ID_TCH3380_Sample2401_Osgoodomys_banderanus.2x36mers-trimmed.a.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Jan 21 14:41:29 PST 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	8734370	0	0	2481480	437298	0.284105	13941191

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.037969
2.0	1.592713
3.0	1.889196
4.0	2.047652
5.0	2.132339
6.0	2.1776
7.0	2.20179
8.0	2.214718
9.0	2.221627
10.0	2.22532
11.0	2.227294
12.0	2.228349
13.0	2.228912
14.0	2.229214
15.0	2.229375
16.0	2.229461
17.0	2.229507
18.0	2.229531
19.0	2.229545
20.0	2.229552
21.0	2.229555
22.0	2.229557
23.0	2.229558
24.0	2.229559
25.0	2.229559
26.0	2.229559
27.0	2.22956
28.0	2.22956
29.0	2.22956
30.0	2.22956
31.0	2.22956
32.0	2.22956
33.0	2.22956
34.0	2.22956
35.0	2.22956
36.0	2.22956
37.0	2.22956
38.0	2.22956
39.0	2.22956
40.0	2.22956
41.0	2.22956
42.0	2.22956
43.0	2.22956
44.0	2.22956
45.0	2.22956
46.0	2.22956
47.0	2.22956
48.0	2.22956
49.0	2.22956
50.0	2.22956
51.0	2.22956
52.0	2.22956
53.0	2.22956
54.0	2.22956
55.0	2.22956
56.0	2.22956
57.0	2.22956
58.0	2.22956
59.0	2.22956
60.0	2.22956
61.0	2.22956
62.0	2.22956
63.0	2.22956
64.0	2.22956
65.0	2.22956
66.0	2.22956
67.0	2.22956
68.0	2.22956
69.0	2.22956
70.0	2.22956
71.0	2.22956
72.0	2.22956
73.0	2.22956
74.0	2.22956
75.0	2.22956
76.0	2.22956
77.0	2.22956
78.0	2.22956
79.0	2.22956
80.0	2.22956
81.0	2.22956
82.0	2.22956
83.0	2.22956
84.0	2.22956
85.0	2.22956
86.0	2.22956
87.0	2.22956
88.0	2.22956
89.0	2.22956
90.0	2.22956
91.0	2.22956
92.0	2.22956
93.0	2.22956
94.0	2.22956
95.0	2.22956
96.0	2.22956
97.0	2.22956
98.0	2.22956
99.0	2.22956
100.0	2.22956