## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[Deer_mouse_Sample2411_Peromyscus_maniculatus_austeris.2x36mers-trimmed.a.bam] OUTPUT=Deer_mouse_Sample2411_Peromyscus_maniculatus_austeris.2x36mers-trimmed.a.dedup.bam METRICS_FILE=Deer_mouse_Sample2411_Peromyscus_maniculatus_austeris.2x36mers-trimmed.a.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Jan 21 14:41:25 PST 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	40985329	0	0	11544143	3840292	0.281665	76684859

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.078382
2.0	1.710295
3.0	2.080585
4.0	2.297569
5.0	2.424718
6.0	2.499225
7.0	2.542885
8.0	2.568469
9.0	2.583461
10.0	2.592246
11.0	2.597394
12.0	2.60041
13.0	2.602178
14.0	2.603214
15.0	2.603821
16.0	2.604176
17.0	2.604385
18.0	2.604507
19.0	2.604578
20.0	2.60462
21.0	2.604645
22.0	2.604659
23.0	2.604668
24.0	2.604673
25.0	2.604676
26.0	2.604677
27.0	2.604678
28.0	2.604679
29.0	2.604679
30.0	2.604679
31.0	2.60468
32.0	2.60468
33.0	2.60468
34.0	2.60468
35.0	2.60468
36.0	2.60468
37.0	2.60468
38.0	2.60468
39.0	2.60468
40.0	2.60468
41.0	2.60468
42.0	2.60468
43.0	2.60468
44.0	2.60468
45.0	2.60468
46.0	2.60468
47.0	2.60468
48.0	2.60468
49.0	2.60468
50.0	2.60468
51.0	2.60468
52.0	2.60468
53.0	2.60468
54.0	2.60468
55.0	2.60468
56.0	2.60468
57.0	2.60468
58.0	2.60468
59.0	2.60468
60.0	2.60468
61.0	2.60468
62.0	2.60468
63.0	2.60468
64.0	2.60468
65.0	2.60468
66.0	2.60468
67.0	2.60468
68.0	2.60468
69.0	2.60468
70.0	2.60468
71.0	2.60468
72.0	2.60468
73.0	2.60468
74.0	2.60468
75.0	2.60468
76.0	2.60468
77.0	2.60468
78.0	2.60468
79.0	2.60468
80.0	2.60468
81.0	2.60468
82.0	2.60468
83.0	2.60468
84.0	2.60468
85.0	2.60468
86.0	2.60468
87.0	2.60468
88.0	2.60468
89.0	2.60468
90.0	2.60468
91.0	2.60468
92.0	2.60468
93.0	2.60468
94.0	2.60468
95.0	2.60468
96.0	2.60468
97.0	2.60468
98.0	2.60468
99.0	2.60468
100.0	2.60468