## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[Chinese_hamster_Sample2409_Cricetulus_griseus.2x36mers-trimmed.a.bam] OUTPUT=Chinese_hamster_Sample2409_Cricetulus_griseus.2x36mers-trimmed.a.dedup.bam METRICS_FILE=Chinese_hamster_Sample2409_Cricetulus_griseus.2x36mers-trimmed.a.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Jan 21 14:41:25 PST 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	26874612	0	0	10617887	3614082	0.39509	30404301

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.097534
2.0	1.550997
3.0	1.738351
4.0	1.81576
5.0	1.847742
6.0	1.860956
7.0	1.866416
8.0	1.868672
9.0	1.869604
10.0	1.869989
11.0	1.870148
12.0	1.870214
13.0	1.870241
14.0	1.870252
15.0	1.870257
16.0	1.870259
17.0	1.870259
18.0	1.87026
19.0	1.87026
20.0	1.87026
21.0	1.87026
22.0	1.87026
23.0	1.87026
24.0	1.87026
25.0	1.87026
26.0	1.87026
27.0	1.87026
28.0	1.87026
29.0	1.87026
30.0	1.87026
31.0	1.87026
32.0	1.87026
33.0	1.87026
34.0	1.87026
35.0	1.87026
36.0	1.87026
37.0	1.87026
38.0	1.87026
39.0	1.87026
40.0	1.87026
41.0	1.87026
42.0	1.87026
43.0	1.87026
44.0	1.87026
45.0	1.87026
46.0	1.87026
47.0	1.87026
48.0	1.87026
49.0	1.87026
50.0	1.87026
51.0	1.87026
52.0	1.87026
53.0	1.87026
54.0	1.87026
55.0	1.87026
56.0	1.87026
57.0	1.87026
58.0	1.87026
59.0	1.87026
60.0	1.87026
61.0	1.87026
62.0	1.87026
63.0	1.87026
64.0	1.87026
65.0	1.87026
66.0	1.87026
67.0	1.87026
68.0	1.87026
69.0	1.87026
70.0	1.87026
71.0	1.87026
72.0	1.87026
73.0	1.87026
74.0	1.87026
75.0	1.87026
76.0	1.87026
77.0	1.87026
78.0	1.87026
79.0	1.87026
80.0	1.87026
81.0	1.87026
82.0	1.87026
83.0	1.87026
84.0	1.87026
85.0	1.87026
86.0	1.87026
87.0	1.87026
88.0	1.87026
89.0	1.87026
90.0	1.87026
91.0	1.87026
92.0	1.87026
93.0	1.87026
94.0	1.87026
95.0	1.87026
96.0	1.87026
97.0	1.87026
98.0	1.87026
99.0	1.87026
100.0	1.87026