## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[Canyon_mouse_ID_2350_Sample2419_Peromyscus_crinitus.2x36mers-trimmed.a.bam] OUTPUT=Canyon_mouse_ID_2350_Sample2419_Peromyscus_crinitus.2x36mers-trimmed.a.dedup.bam METRICS_FILE=Canyon_mouse_ID_2350_Sample2419_Peromyscus_crinitus.2x36mers-trimmed.a.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Jan 21 14:41:40 PST 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	60957294	0	0	43052280	26214116	0.70627	22961968

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.192252
2.0	1.276091
3.0	1.281986
4.0	1.282401
5.0	1.28243
6.0	1.282432
7.0	1.282432
8.0	1.282432
9.0	1.282432
10.0	1.282432
11.0	1.282432
12.0	1.282432
13.0	1.282432
14.0	1.282432
15.0	1.282432
16.0	1.282432
17.0	1.282432
18.0	1.282432
19.0	1.282432
20.0	1.282432
21.0	1.282432
22.0	1.282432
23.0	1.282432
24.0	1.282432
25.0	1.282432
26.0	1.282432
27.0	1.282432
28.0	1.282432
29.0	1.282432
30.0	1.282432
31.0	1.282432
32.0	1.282432
33.0	1.282432
34.0	1.282432
35.0	1.282432
36.0	1.282432
37.0	1.282432
38.0	1.282432
39.0	1.282432
40.0	1.282432
41.0	1.282432
42.0	1.282432
43.0	1.282432
44.0	1.282432
45.0	1.282432
46.0	1.282432
47.0	1.282432
48.0	1.282432
49.0	1.282432
50.0	1.282432
51.0	1.282432
52.0	1.282432
53.0	1.282432
54.0	1.282432
55.0	1.282432
56.0	1.282432
57.0	1.282432
58.0	1.282432
59.0	1.282432
60.0	1.282432
61.0	1.282432
62.0	1.282432
63.0	1.282432
64.0	1.282432
65.0	1.282432
66.0	1.282432
67.0	1.282432
68.0	1.282432
69.0	1.282432
70.0	1.282432
71.0	1.282432
72.0	1.282432
73.0	1.282432
74.0	1.282432
75.0	1.282432
76.0	1.282432
77.0	1.282432
78.0	1.282432
79.0	1.282432
80.0	1.282432
81.0	1.282432
82.0	1.282432
83.0	1.282432
84.0	1.282432
85.0	1.282432
86.0	1.282432
87.0	1.282432
88.0	1.282432
89.0	1.282432
90.0	1.282432
91.0	1.282432
92.0	1.282432
93.0	1.282432
94.0	1.282432
95.0	1.282432
96.0	1.282432
97.0	1.282432
98.0	1.282432
99.0	1.282432
100.0	1.282432