File accession File format Output type Experiment accession Assay Biosample term id Biosample term name Biosample type Biosample organism Biosample treatments Biosample treatments amount Biosample treatments duration Biosample genetic modifications methods Biosample genetic modifications categories Biosample genetic modifications targets Biosample genetic modifications gene targets Biosample genetic modifications site coordinates Biosample genetic modifications zygosity Experiment target Library made from Library depleted in Library extraction method Library lysis method Library crosslinking method Library strand specific Experiment date released Project RBNS protein concentration Library fragmentation method Library size range Biological replicate(s) Technical replicate Read length Mapped read length Run type Paired end Paired with Derived from Size Lab md5sum dbxrefs File download URL Assembly Genome annotation Platform Controlled by File Status s3_uri Audit WARNING Audit INTERNAL_ACTION Audit NOT_COMPLIANT Audit ERROR ENCFF997AUJ fastq reads ENCSR486XAS ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF033YBG 853737339 Bing Ren, UCSD 4fb64ceda51d93c333f1f74077ed1347 https://www.encodeproject.org/files/ENCFF997AUJ/@@download/ENCFF997AUJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/face448a-50e6-4e5f-a316-8d2688951244/ENCFF997AUJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF033YBG fastq reads ENCSR486XAS ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF997AUJ 922692444 Bing Ren, UCSD 801cb914aa842f57e1cde551bbae8c8c https://www.encodeproject.org/files/ENCFF033YBG/@@download/ENCFF033YBG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/da052b12-71a2-467c-90e3-1c8b1559e130/ENCFF033YBG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF211VPG fastq reads ENCSR486XAS ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF442KCP 948359474 Bing Ren, UCSD 8e88b5708a00f9a4fdbc4651353576c9 https://www.encodeproject.org/files/ENCFF211VPG/@@download/ENCFF211VPG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/922aa164-d513-4e79-b8b3-a0bcecb48c3b/ENCFF211VPG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF442KCP fastq reads ENCSR486XAS ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF211VPG 1021039739 Bing Ren, UCSD 4357e5164e97786af981ce2eb509a4ff https://www.encodeproject.org/files/ENCFF442KCP/@@download/ENCFF442KCP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/7eae4580-1f04-499f-9f1e-12ea4f6d177c/ENCFF442KCP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF576WIS fastq reads ENCSR758IRM ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF802JNF 1460235248 Bing Ren, UCSD c3d8831a2d341fa7b00f248cbed838d0 https://www.encodeproject.org/files/ENCFF576WIS/@@download/ENCFF576WIS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/cb4e8a7e-dc9e-410a-894e-3196130613eb/ENCFF576WIS.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF958YUR fastq reads ENCSR758IRM ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF504EBV 1139253112 Bing Ren, UCSD 832b1569ed028a1d3ea47c56097761b9 https://www.encodeproject.org/files/ENCFF958YUR/@@download/ENCFF958YUR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/6c5b2a36-825c-441c-b428-1bb5cec0caee/ENCFF958YUR.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF802JNF fastq reads ENCSR758IRM ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF576WIS 1334995707 Bing Ren, UCSD d9f27294157b28394958493051e4a6e2 https://www.encodeproject.org/files/ENCFF802JNF/@@download/ENCFF802JNF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/85bd646b-b17b-439e-ad58-9a6208773a5d/ENCFF802JNF.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF504EBV fastq reads ENCSR758IRM ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF958YUR 1203815883 Bing Ren, UCSD ab247f5de9030612b741ed3d44f254ee https://www.encodeproject.org/files/ENCFF504EBV/@@download/ENCFF504EBV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/40515c74-9e11-462d-802b-34089cfb17b4/ENCFF504EBV.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF556FLA fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 1 ENCFF966BNE 1569652912 Michael Snyder, Stanford 4e836ab60db9522d6804763f5013d166 https://www.encodeproject.org/files/ENCFF556FLA/@@download/ENCFF556FLA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/a8a8ddcd-ed46-4d98-88fe-46087e4c19d5/ENCFF556FLA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF897PRE fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 1 ENCFF822IHI 2525823237 Michael Snyder, Stanford 281643048153393579e5b842a46f92fb https://www.encodeproject.org/files/ENCFF897PRE/@@download/ENCFF897PRE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/0f5ce0ac-bb6f-4ab3-931b-55a2cc38603a/ENCFF897PRE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF830XRG fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 2 ENCFF442KHM 3237455021 Michael Snyder, Stanford 45dc728bcb08aef85e749347e864324f https://www.encodeproject.org/files/ENCFF830XRG/@@download/ENCFF830XRG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/c61a8d42-81f5-48ed-ae0b-0c69ea47350b/ENCFF830XRG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF184KSH fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 2 ENCFF515YWE 1775094165 Michael Snyder, Stanford ad72e26264bc75ae533307b8c9e1cb1f https://www.encodeproject.org/files/ENCFF184KSH/@@download/ENCFF184KSH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/4239d211-82db-467e-941e-1e6a8182174b/ENCFF184KSH.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF966BNE fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 2 ENCFF556FLA 1722506058 Michael Snyder, Stanford 703ba46e7666b37f1818f58ca6c6f9b5 https://www.encodeproject.org/files/ENCFF966BNE/@@download/ENCFF966BNE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/fb6bd89f-862f-4e35-89ad-1e49d305e9ac/ENCFF966BNE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF921NTH fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 2 ENCFF095SKI 2195709203 Michael Snyder, Stanford e4069ab759edb39057c3e6c6ef7cf50f https://www.encodeproject.org/files/ENCFF921NTH/@@download/ENCFF921NTH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/23b08bbc-efd9-445c-adf0-5ab640ce5122/ENCFF921NTH.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF191EDJ fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 1 ENCFF793IRQ 1156902967 Michael Snyder, Stanford cab08a66b087e790e7beb5fec860587c https://www.encodeproject.org/files/ENCFF191EDJ/@@download/ENCFF191EDJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/c9feb408-d4d9-4efc-8b92-0c01d5d3521b/ENCFF191EDJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF696LEH fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 1 ENCFF234NJI 1817751805 Michael Snyder, Stanford 854470553a1dde2eed00cbdefa65ba63 https://www.encodeproject.org/files/ENCFF696LEH/@@download/ENCFF696LEH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/495a44e2-3218-41ae-bf72-d6d95f285341/ENCFF696LEH.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF442KHM fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 1 ENCFF830XRG 3117276150 Michael Snyder, Stanford 00a6e29282b8fc8e78672f0e3b641a24 https://www.encodeproject.org/files/ENCFF442KHM/@@download/ENCFF442KHM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/644a80a4-5fd1-4c4d-8a01-1fd0c69e9dab/ENCFF442KHM.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF748DSB fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 1 5 76 paired-ended 2 ENCFF663BDW 1058325187 Michael Snyder, Stanford 062201341c8e6c024df22813cc951de7 https://www.encodeproject.org/files/ENCFF748DSB/@@download/ENCFF748DSB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/8d15d680-3434-4651-9ba0-ed7efc8c9bf9/ENCFF748DSB.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF234NJI fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 2 ENCFF696LEH 2001378888 Michael Snyder, Stanford d34b731956c88236034d2af39f4307ee https://www.encodeproject.org/files/ENCFF234NJI/@@download/ENCFF234NJI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/48a17c37-da2a-4fd5-9b34-95325be685ad/ENCFF234NJI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF822IHI fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 2 ENCFF897PRE 2743623795 Michael Snyder, Stanford 2bbfba91de72fe407d1258b99a8d8f2a https://www.encodeproject.org/files/ENCFF822IHI/@@download/ENCFF822IHI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/91498c8e-3b6f-4051-8838-7caf2e140e2b/ENCFF822IHI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF586ZZA fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 1 ENCFF788EBU 1027900720 Michael Snyder, Stanford 158b206e98c21797af8e3ecffa376694 https://www.encodeproject.org/files/ENCFF586ZZA/@@download/ENCFF586ZZA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/f6336d16-3aa2-40ff-938c-41b6bfb8f4b0/ENCFF586ZZA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF515YWE fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 1 ENCFF184KSH 1702630041 Michael Snyder, Stanford 7dd7190ce2913286f7e0a908be9b9d21 https://www.encodeproject.org/files/ENCFF515YWE/@@download/ENCFF515YWE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/8ec849d8-96cf-4a2a-81fc-c49600100326/ENCFF515YWE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF548SJE fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 1 ENCFF221ONZ 1437608878 Michael Snyder, Stanford 55bbf009927581d59d53e6fc1fe589ac https://www.encodeproject.org/files/ENCFF548SJE/@@download/ENCFF548SJE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/72e1f5f6-15fe-462f-b720-c456246da112/ENCFF548SJE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF095SKI fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 1 ENCFF921NTH 2080576945 Michael Snyder, Stanford 1ad4a8ba36925a364c0a7b52961bdc37 https://www.encodeproject.org/files/ENCFF095SKI/@@download/ENCFF095SKI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/10f03779-7bfe-440c-9e36-ab712a647a56/ENCFF095SKI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF663BDW fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 1 5 76 paired-ended 1 ENCFF748DSB 1018341280 Michael Snyder, Stanford 6ec14a0a5c816d947f1f397a3ade32e3 https://www.encodeproject.org/files/ENCFF663BDW/@@download/ENCFF663BDW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/c24707fa-8b6c-4152-8a28-ea0e5421616b/ENCFF663BDW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF221ONZ fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 2 ENCFF548SJE 1524618309 Michael Snyder, Stanford 9a50b2ac637a4016f3e49d74c696434b https://www.encodeproject.org/files/ENCFF221ONZ/@@download/ENCFF221ONZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/a73b0a67-9886-43f3-9c4e-11bbb871c9a6/ENCFF221ONZ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF793IRQ fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 2 ENCFF191EDJ 1286151062 Michael Snyder, Stanford 0ae5d939321598378e837b6c0ad05975 https://www.encodeproject.org/files/ENCFF793IRQ/@@download/ENCFF793IRQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/5dde89df-9b0e-4e58-939f-bd0632cb9518/ENCFF793IRQ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF788EBU fastq reads ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 2 ENCFF586ZZA 1081929314 Michael Snyder, Stanford af72113e622791346295dbd8f3f83ae2 https://www.encodeproject.org/files/ENCFF788EBU/@@download/ENCFF788EBU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/412959ea-4f4d-418e-a394-81cd29714460/ENCFF788EBU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF907NVD bam alignments ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 2 ENCFF095SKI, ENCFF191EDJ, ENCFF221ONZ, ENCFF548SJE, ENCFF556FLA, ENCFF586ZZA, ENCFF788EBU, ENCFF793IRQ, ENCFF921NTH, ENCFF966BNE 7954402698 Anshul Kundaje, Stanford 3614e6863712937e947a5c7a941a76d7 https://www.encodeproject.org/files/ENCFF907NVD/@@download/ENCFF907NVD.bam GRCh38 released s3://encode-public/2017/04/01/0d0a2849-1dc8-4a4f-a387-8698b45abf76/ENCFF907NVD.bam mismatched file status, experiment not submitted to GEO ENCFF799HAR bam alignments ENCSR290YMN ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0.5 day DNA False 2017-10-10 GGR 1 ENCFF184KSH, ENCFF234NJI, ENCFF442KHM, ENCFF515YWE, ENCFF663BDW, ENCFF696LEH, ENCFF748DSB, ENCFF822IHI, ENCFF830XRG, ENCFF897PRE 8910181734 Anshul Kundaje, Stanford a76f2f46da72fcb8c737f3521185aa6d https://www.encodeproject.org/files/ENCFF799HAR/@@download/ENCFF799HAR.bam GRCh38 released s3://encode-public/2017/04/01/1ded0e98-a51b-41e0-ac35-e38dd82d9077/ENCFF799HAR.bam mismatched file status, experiment not submitted to GEO ENCFF360MVK fastq reads ENCSR343TXK ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF443PRW 1436595334 Bing Ren, UCSD 271d482f427b102588fe6e4f14231973 https://www.encodeproject.org/files/ENCFF360MVK/@@download/ENCFF360MVK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/1cdb4135-604c-4248-9f33-611aff897eb1/ENCFF360MVK.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF382CMV fastq reads ENCSR343TXK ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF688ZFD 1865452555 Bing Ren, UCSD c70aa00264263af1745fabed1923bb30 https://www.encodeproject.org/files/ENCFF382CMV/@@download/ENCFF382CMV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/21bac067-ba02-448d-832d-dede11267da0/ENCFF382CMV.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF688ZFD fastq reads ENCSR343TXK ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF382CMV 2051984812 Bing Ren, UCSD 9f7dcc1cdc0d51e8d1418c269594b393 https://www.encodeproject.org/files/ENCFF688ZFD/@@download/ENCFF688ZFD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/c3b01d84-2152-4376-860c-4ccfdadd8653/ENCFF688ZFD.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF443PRW fastq reads ENCSR343TXK ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF360MVK 1563633880 Bing Ren, UCSD 04c95afa2af71fce8b7e7941af7bf6d1 https://www.encodeproject.org/files/ENCFF443PRW/@@download/ENCFF443PRW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/4b2798d1-2919-4c99-8bcb-97db4b2e3e23/ENCFF443PRW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF329VCX fastq reads ENCSR465PYP ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF290ZBP 1518088297 Bing Ren, UCSD f127e113341cad94da10aa70fafbf154 https://www.encodeproject.org/files/ENCFF329VCX/@@download/ENCFF329VCX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/49c57a49-8c40-4c82-9473-7505ad5d153a/ENCFF329VCX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF341HRL fastq reads ENCSR465PYP ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF489XAT 930807280 Bing Ren, UCSD 74a517542018b55959460877a984876e https://www.encodeproject.org/files/ENCFF341HRL/@@download/ENCFF341HRL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/1eb1c043-4a1a-4c6d-8d1a-4b762a0e6b1e/ENCFF341HRL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF290ZBP fastq reads ENCSR465PYP ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF329VCX 1642505616 Bing Ren, UCSD 9e90f0a5164910e98adf02bce30519a7 https://www.encodeproject.org/files/ENCFF290ZBP/@@download/ENCFF290ZBP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/89a7c057-d3ec-44fe-80b5-c208056167f5/ENCFF290ZBP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF489XAT fastq reads ENCSR465PYP ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF341HRL 1015483374 Bing Ren, UCSD e046c0aa398a720c14eaaef21f968c61 https://www.encodeproject.org/files/ENCFF489XAT/@@download/ENCFF489XAT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/094cf05c-daac-414c-a6c7-4e4496de3152/ENCFF489XAT.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF483MKX fastq reads ENCSR451NAE ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF913PMS 1050827748 Bing Ren, UCSD 29c60a8f40898afd7f64f5af5d200509 https://www.encodeproject.org/files/ENCFF483MKX/@@download/ENCFF483MKX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/8c287cbd-1732-41cb-a095-dddd449d3e60/ENCFF483MKX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF999SZR fastq reads ENCSR451NAE ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF655OFT 1354053940 Bing Ren, UCSD ebba303e7c04de1a211dc05769d28fc1 https://www.encodeproject.org/files/ENCFF999SZR/@@download/ENCFF999SZR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/7420cdfa-94d3-49f4-93fd-96cb9cf5a65b/ENCFF999SZR.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF655OFT fastq reads ENCSR451NAE ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF999SZR 1257345869 Bing Ren, UCSD c77f775a08241b1657e2e842236c2bfb https://www.encodeproject.org/files/ENCFF655OFT/@@download/ENCFF655OFT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/711550bb-d5b6-496e-9850-46975f6457d0/ENCFF655OFT.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF913PMS fastq reads ENCSR451NAE ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF483MKX 974821613 Bing Ren, UCSD b35160036a1e30082c008db2da61e75e https://www.encodeproject.org/files/ENCFF913PMS/@@download/ENCFF913PMS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/0762adfa-d2c8-4146-8e08-4af4d1930178/ENCFF913PMS.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF745DEJ fastq reads ENCSR351YUI ATAC-seq CL:0000775 neutrophil primary cell Mus musculus DNA False 2017-11-15 ENCODE 2 1 48 single-ended 2526139577 Ross Hardison, PennState aa2bd095c78b473f7311c847f315d4c5 https://www.encodeproject.org/files/ENCFF745DEJ/@@download/ENCFF745DEJ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/10/06/38214236-be44-41ae-908f-a96e55353131/ENCFF745DEJ.fastq.gz experiment not submitted to GEO ENCFF947IIK fastq reads ENCSR351YUI ATAC-seq CL:0000775 neutrophil primary cell Mus musculus DNA False 2017-11-15 ENCODE 1 1 48 single-ended 2661222219 Ross Hardison, PennState 2a4361ccf714980717b19be9ec35cbb0 https://www.encodeproject.org/files/ENCFF947IIK/@@download/ENCFF947IIK.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/10/06/a921a003-ec69-4dd9-81fa-7013bce4fa1f/ENCFF947IIK.fastq.gz experiment not submitted to GEO ENCFF161EJL bigWig signal of all reads ENCSR351YUI ATAC-seq CL:0000775 neutrophil primary cell Mus musculus DNA False 2017-11-15 ENCODE 1 1 ENCFF366SLO 3493830365 Ross Hardison, PennState 181c01275e8805a0323b381fc21c4962 https://www.encodeproject.org/files/ENCFF161EJL/@@download/ENCFF161EJL.bigWig mm10 Illumina HiSeq 2000 released s3://encode-public/2017/10/13/7fb4a3e8-828f-4613-b91a-bf1305739ea4/ENCFF161EJL.bigWig experiment not submitted to GEO ENCFF638WXQ bam alignments ENCSR351YUI ATAC-seq CL:0000775 neutrophil primary cell Mus musculus DNA False 2017-11-15 ENCODE 2 1 ENCFF745DEJ 1750575806 Ross Hardison, PennState 0843115f5691da2b9a39df421b57b4ff https://www.encodeproject.org/files/ENCFF638WXQ/@@download/ENCFF638WXQ.bam mm10 Illumina NextSeq 500 released s3://encode-public/2017/10/13/8b7c065a-956c-4690-aec2-6325fcd5b557/ENCFF638WXQ.bam experiment not submitted to GEO ENCFF149EXI bigBed narrowPeak peaks ENCSR351YUI ATAC-seq CL:0000775 neutrophil primary cell Mus musculus DNA False 2017-11-15 ENCODE 1 1 ENCFF326ODZ, ENCFF790DJT 3256680 Ross Hardison, PennState 42638f43da4e714530027ef0e5624a87 https://www.encodeproject.org/files/ENCFF149EXI/@@download/ENCFF149EXI.bigBed mm10 Illumina HiSeq 2000 released s3://encode-public/2017/10/13/9fd06945-2d05-4ae7-a677-c7408331c483/ENCFF149EXI.bigBed inconsistent assembly experiment not submitted to GEO ENCFF133RPF bigBed narrowPeak peaks ENCSR351YUI ATAC-seq CL:0000775 neutrophil primary cell Mus musculus DNA False 2017-11-15 ENCODE 2 1 ENCFF638WXQ 24125257 Ross Hardison, PennState 2f591a3c2ee04af0972ee14ee1d681a2 https://www.encodeproject.org/files/ENCFF133RPF/@@download/ENCFF133RPF.bigBed mm10 Illumina HiSeq 2000 released s3://encode-public/2017/10/13/4a5f431e-a8d2-4a80-b338-bb3344b40109/ENCFF133RPF.bigBed experiment not submitted to GEO ENCFF880XNW bigBed bed3+ peaks ENCSR351YUI ATAC-seq CL:0000775 neutrophil primary cell Mus musculus DNA False 2017-11-15 ENCODE 2 1 ENCFF193REK, ENCFF790DJT 1363224 Ross Hardison, PennState c540631e31df3993044cb78128d65de4 https://www.encodeproject.org/files/ENCFF880XNW/@@download/ENCFF880XNW.bigBed mm10 Illumina HiSeq 2000 released s3://encode-public/2017/10/13/7aeeef9d-84b3-4977-b158-65b674e3ef46/ENCFF880XNW.bigBed inconsistent assembly experiment not submitted to GEO ENCFF366SLO bam alignments ENCSR351YUI ATAC-seq CL:0000775 neutrophil primary cell Mus musculus DNA False 2017-11-15 ENCODE 1 1 ENCFF947IIK 2060530192 Ross Hardison, PennState f8c01774f5a48ba79d4010f2d879dec8 https://www.encodeproject.org/files/ENCFF366SLO/@@download/ENCFF366SLO.bam mm10 Illumina NextSeq 500 released s3://encode-public/2017/10/13/b69f5d12-b262-4b8f-a365-7ba52e942156/ENCFF366SLO.bam experiment not submitted to GEO ENCFF650ONS bigBed bed3+ peaks ENCSR351YUI ATAC-seq CL:0000775 neutrophil primary cell Mus musculus DNA False 2017-11-15 ENCODE 1 1 ENCFF366SLO 1778454 Ross Hardison, PennState 5b7f198fc6ed0e8d96b994fa611ebd49 https://www.encodeproject.org/files/ENCFF650ONS/@@download/ENCFF650ONS.bigBed mm10 Illumina HiSeq 2000 released s3://encode-public/2017/10/13/9386dac3-9e05-4f90-83b5-90a07a85981d/ENCFF650ONS.bigBed experiment not submitted to GEO ENCFF195BDP bigBed bed3+ peaks ENCSR351YUI ATAC-seq CL:0000775 neutrophil primary cell Mus musculus DNA False 2017-11-15 ENCODE 1 1 ENCFF650ONS, ENCFF790DJT 1755085 Ross Hardison, PennState 26eafd278989ee96831039d6bc42ee8f https://www.encodeproject.org/files/ENCFF195BDP/@@download/ENCFF195BDP.bigBed mm10 Illumina HiSeq 2000 released s3://encode-public/2017/10/13/e292df2a-5afe-43d1-9535-640b76e0302e/ENCFF195BDP.bigBed inconsistent assembly experiment not submitted to GEO ENCFF808MRY bigWig signal of all reads ENCSR351YUI ATAC-seq CL:0000775 neutrophil primary cell Mus musculus DNA False 2017-11-15 ENCODE 2 1 ENCFF638WXQ 3952469064 Ross Hardison, PennState bece59c7bcaee6bcc67e468e56ee7f7a https://www.encodeproject.org/files/ENCFF808MRY/@@download/ENCFF808MRY.bigWig mm10 Illumina HiSeq 2000 released s3://encode-public/2017/10/13/7b5eeab4-1093-4dfa-a76c-edb8645d56ca/ENCFF808MRY.bigWig experiment not submitted to GEO ENCFF326ODZ bigBed narrowPeak peaks ENCSR351YUI ATAC-seq CL:0000775 neutrophil primary cell Mus musculus DNA False 2017-11-15 ENCODE 1 1 ENCFF366SLO 11522981 Ross Hardison, PennState b3eaf31f54f08411dcbbb5c9624787c1 https://www.encodeproject.org/files/ENCFF326ODZ/@@download/ENCFF326ODZ.bigBed mm10 Illumina HiSeq 2000 released s3://encode-public/2017/10/13/4a3e9e70-b800-46bb-97a4-c3dddff46de8/ENCFF326ODZ.bigBed experiment not submitted to GEO ENCFF678ONL bigBed narrowPeak peaks ENCSR351YUI ATAC-seq CL:0000775 neutrophil primary cell Mus musculus DNA False 2017-11-15 ENCODE 2 1 ENCFF133RPF, ENCFF790DJT 2658618 Ross Hardison, PennState d3c20c0cae60eec251c9e7452d46a7f8 https://www.encodeproject.org/files/ENCFF678ONL/@@download/ENCFF678ONL.bigBed mm10 Illumina HiSeq 2000 released s3://encode-public/2017/10/13/759e057d-f94e-4438-88d9-06f0908792ce/ENCFF678ONL.bigBed inconsistent assembly experiment not submitted to GEO ENCFF193REK bigBed bed3+ peaks ENCSR351YUI ATAC-seq CL:0000775 neutrophil primary cell Mus musculus DNA False 2017-11-15 ENCODE 2 1 ENCFF638WXQ 1385196 Ross Hardison, PennState b58659782c70922c5e4c171c3c97aa25 https://www.encodeproject.org/files/ENCFF193REK/@@download/ENCFF193REK.bigBed mm10 Illumina HiSeq 2000 released s3://encode-public/2017/10/13/30a1d83e-1e23-4b7e-bff9-a66f9fe10973/ENCFF193REK.bigBed experiment not submitted to GEO ENCFF184PAB fastq reads ENCSR366VBB ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2017-11-15 ENCODE 1 1 48 single-ended 5013995123 Ross Hardison, PennState ae2689d03aad641b6f1131b8b9a75a6e https://www.encodeproject.org/files/ENCFF184PAB/@@download/ENCFF184PAB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/10/06/4d4436fb-6eee-4619-b43e-e065b9624f65/ENCFF184PAB.fastq.gz inconsistent platforms experiment not submitted to GEO ENCFF204JEE fastq reads ENCSR366VBB ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2017-11-15 ENCODE 2 1 48 single-ended 2688496712 Ross Hardison, PennState 6d5f1cce51fdf12a37ec172c2ca2ce5a https://www.encodeproject.org/files/ENCFF204JEE/@@download/ENCFF204JEE.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/10/06/21f27d77-a3b0-4478-82dc-19c0bb07db1e/ENCFF204JEE.fastq.gz inconsistent platforms experiment not submitted to GEO ENCFF643BLM bigBed narrowPeak peaks ENCSR366VBB ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2017-11-15 ENCODE 1 1 ENCFF985XZS 7847323 Ross Hardison, PennState 8eaefa0f514f9d69c19e6b5d202a2c2e https://www.encodeproject.org/files/ENCFF643BLM/@@download/ENCFF643BLM.bigBed mm10 Illumina HiSeq 2000 released s3://encode-public/2017/10/13/dce525dc-553c-4fd5-9bdc-241a7ee62d60/ENCFF643BLM.bigBed inconsistent platforms experiment not submitted to GEO ENCFF073OPV bam alignments ENCSR366VBB ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2017-11-15 ENCODE 2 1 ENCFF204JEE 2257603715 Ross Hardison, PennState e33eefff29b68eecd0948b98be385ef3 https://www.encodeproject.org/files/ENCFF073OPV/@@download/ENCFF073OPV.bam mm10 Illumina NextSeq 500 released s3://encode-public/2017/10/13/5c4cb263-d160-4585-bab4-3231760eccb8/ENCFF073OPV.bam inconsistent platforms experiment not submitted to GEO ENCFF683WEV bigWig signal of all reads ENCSR366VBB ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2017-11-15 ENCODE 1 1 ENCFF985XZS 3366268505 Ross Hardison, PennState 9b326f4894d91c359d5d6681079e8a4d https://www.encodeproject.org/files/ENCFF683WEV/@@download/ENCFF683WEV.bigWig mm10 Illumina HiSeq 2000 released s3://encode-public/2017/10/13/cb17ebe3-929d-45e3-9fce-c6774d2f978c/ENCFF683WEV.bigWig inconsistent platforms experiment not submitted to GEO ENCFF985XZS bam alignments ENCSR366VBB ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2017-11-15 ENCODE 1 1 ENCFF184PAB 2636717392 Ross Hardison, PennState 1242e066a2abdc7597e3f876c77515d7 https://www.encodeproject.org/files/ENCFF985XZS/@@download/ENCFF985XZS.bam mm10 Illumina HiSeq 2000 released s3://encode-public/2017/10/13/56873965-7b1f-4589-a968-b7c56e34c8d4/ENCFF985XZS.bam inconsistent platforms experiment not submitted to GEO ENCFF038QRC bigBed bed3+ peaks ENCSR366VBB ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2017-11-15 ENCODE 1 1 ENCFF790DJT, ENCFF800SEK 3503606 Ross Hardison, PennState a8f6a92ebca94858a19105476a28ba90 https://www.encodeproject.org/files/ENCFF038QRC/@@download/ENCFF038QRC.bigBed mm10 Illumina HiSeq 2000 released s3://encode-public/2017/10/13/f2c22c33-7336-48f5-b09c-11a4edbd9f1f/ENCFF038QRC.bigBed inconsistent platforms, inconsistent assembly experiment not submitted to GEO ENCFF595RPN bigBed narrowPeak peaks ENCSR366VBB ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2017-11-15 ENCODE 2 1 ENCFF073OPV 11990532 Ross Hardison, PennState e692eea911510f1a8f42475979f4fc49 https://www.encodeproject.org/files/ENCFF595RPN/@@download/ENCFF595RPN.bigBed mm10 Illumina HiSeq 2000 released s3://encode-public/2017/10/13/6a3983cc-c5ee-4974-ae4c-538b3b0f78dc/ENCFF595RPN.bigBed inconsistent platforms experiment not submitted to GEO ENCFF464YYU bigBed bed3+ peaks ENCSR366VBB ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2017-11-15 ENCODE 2 1 ENCFF073OPV 2040363 Ross Hardison, PennState 80944ab520426338ef5f2fb0ce170061 https://www.encodeproject.org/files/ENCFF464YYU/@@download/ENCFF464YYU.bigBed mm10 Illumina HiSeq 2000 released s3://encode-public/2017/10/13/94b3ec48-8eed-48ad-9f70-c573e31e069f/ENCFF464YYU.bigBed inconsistent platforms experiment not submitted to GEO ENCFF931CIR bigBed narrowPeak peaks ENCSR366VBB ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2017-11-15 ENCODE 2 1 ENCFF595RPN, ENCFF790DJT 3219767 Ross Hardison, PennState e5433bdfecf16056d051b05b6dbc9877 https://www.encodeproject.org/files/ENCFF931CIR/@@download/ENCFF931CIR.bigBed mm10 Illumina HiSeq 2000 released s3://encode-public/2017/10/13/4cac5ed4-25e3-4f5f-8021-913f267076b0/ENCFF931CIR.bigBed inconsistent platforms, inconsistent assembly experiment not submitted to GEO ENCFF800SEK bigBed bed3+ peaks ENCSR366VBB ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2017-11-15 ENCODE 1 1 ENCFF985XZS 3532007 Ross Hardison, PennState 2c67f59c560dc259cab9bfda122255e6 https://www.encodeproject.org/files/ENCFF800SEK/@@download/ENCFF800SEK.bigBed mm10 Illumina HiSeq 2000 released s3://encode-public/2017/10/13/f41dce41-8188-4291-b7ba-c3cba2430a58/ENCFF800SEK.bigBed inconsistent platforms experiment not submitted to GEO ENCFF352AQJ bigBed narrowPeak peaks ENCSR366VBB ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2017-11-15 ENCODE 1 1 ENCFF643BLM, ENCFF790DJT 3237977 Ross Hardison, PennState 309145260eebdfaa6266b4aa52eecf70 https://www.encodeproject.org/files/ENCFF352AQJ/@@download/ENCFF352AQJ.bigBed mm10 Illumina HiSeq 2000 released s3://encode-public/2017/10/13/5de27072-08a5-49c6-8b04-a5529da7943e/ENCFF352AQJ.bigBed inconsistent platforms, inconsistent assembly experiment not submitted to GEO ENCFF390RXR bigWig signal of all reads ENCSR366VBB ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2017-11-15 ENCODE 2 1 ENCFF073OPV 3537308629 Ross Hardison, PennState 080143dd60218fcb9545a99b537507df https://www.encodeproject.org/files/ENCFF390RXR/@@download/ENCFF390RXR.bigWig mm10 Illumina HiSeq 2000 released s3://encode-public/2017/10/13/1adf0aec-6e76-4ce7-86dc-cae346591c42/ENCFF390RXR.bigWig inconsistent platforms experiment not submitted to GEO ENCFF239CQJ bigBed bed3+ peaks ENCSR366VBB ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2017-11-15 ENCODE 2 1 ENCFF464YYU, ENCFF790DJT 2018410 Ross Hardison, PennState 44d3080e27d686574a8cd87770865f3d https://www.encodeproject.org/files/ENCFF239CQJ/@@download/ENCFF239CQJ.bigBed mm10 Illumina HiSeq 2000 released s3://encode-public/2017/10/13/f234815e-9abf-4de8-9869-a95da4595a6d/ENCFF239CQJ.bigBed inconsistent platforms, inconsistent assembly experiment not submitted to GEO ENCFF437GNH fastq reads ENCSR335VJW ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF204EVA 977252055 Bing Ren, UCSD cc8bb020a27f0f54fe126f579d61f4b5 https://www.encodeproject.org/files/ENCFF437GNH/@@download/ENCFF437GNH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/74e0fe81-0876-4e17-ba4e-9ecb6cff0c4c/ENCFF437GNH.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF244BWB fastq reads ENCSR335VJW ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF979DGG 1718632783 Bing Ren, UCSD 1dff1ecb0c20f3f6165653667a50d6ea https://www.encodeproject.org/files/ENCFF244BWB/@@download/ENCFF244BWB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/690aeb14-cb53-4296-9a11-ceef55482072/ENCFF244BWB.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF979DGG fastq reads ENCSR335VJW ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF244BWB 1601558175 Bing Ren, UCSD 74b66f28a17fdad1d500065c41e32ecd https://www.encodeproject.org/files/ENCFF979DGG/@@download/ENCFF979DGG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/9e64cd3a-e32e-4117-8bb8-48edac86b458/ENCFF979DGG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF204EVA fastq reads ENCSR335VJW ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF437GNH 869449517 Bing Ren, UCSD d90156a1eae064bb7eb4862714d75c23 https://www.encodeproject.org/files/ENCFF204EVA/@@download/ENCFF204EVA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/530a958a-8c2f-4412-9f62-979e2cb8ba56/ENCFF204EVA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF579LXC fastq reads ENCSR826JKN ATAC-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus DNA False 2017-03-07 GGR 1 1 50 paired-ended 1 ENCFF107VOW 797336135 Christina Leslie, MSKCC eaf221fb69175cbbfcbbc5cade591d70 https://www.encodeproject.org/files/ENCFF579LXC/@@download/ENCFF579LXC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/05/d8f94cd0-3d9e-4c3b-87f3-61f719c8ddc4/ENCFF579LXC.fastq.gz experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF832XXN fastq reads ENCSR826JKN ATAC-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus DNA False 2017-03-07 GGR 1 2 50 paired-ended 2 ENCFF743WMF 861886724 Christina Leslie, MSKCC 079c881b0845386267a00eeaa799d7b6 https://www.encodeproject.org/files/ENCFF832XXN/@@download/ENCFF832XXN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/05/066e89b1-bc41-4274-8644-7d57f79545f5/ENCFF832XXN.fastq.gz experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF743WMF fastq reads ENCSR826JKN ATAC-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus DNA False 2017-03-07 GGR 1 2 50 paired-ended 1 ENCFF832XXN 851545061 Christina Leslie, MSKCC c9e48941d22c843062e9594869d0ec9b https://www.encodeproject.org/files/ENCFF743WMF/@@download/ENCFF743WMF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/05/73ce4762-3d99-4014-928a-ed1fc8837065/ENCFF743WMF.fastq.gz experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF107VOW fastq reads ENCSR826JKN ATAC-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus DNA False 2017-03-07 GGR 1 1 50 paired-ended 2 ENCFF579LXC 814026887 Christina Leslie, MSKCC 0eb3ca10cf27a1688cb17a5c015c33cf https://www.encodeproject.org/files/ENCFF107VOW/@@download/ENCFF107VOW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/05/e8572685-70a4-4d06-b381-59e1ef295dcf/ENCFF107VOW.fastq.gz experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF515NYO bam alignments ENCSR826JKN ATAC-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF107VOW, ENCFF579LXC 717725240 Christina Leslie, MSKCC ce2095579c6c1871bddd8e5cc7be2189 https://www.encodeproject.org/files/ENCFF515NYO/@@download/ENCFF515NYO.bam mm10 released s3://encode-public/2016/12/05/6d004c24-cfb0-421b-a61c-d05a8c6d6e3d/ENCFF515NYO.bam experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF217CGB bam alignments ENCSR826JKN ATAC-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF743WMF, ENCFF832XXN 797528820 Christina Leslie, MSKCC 5b9603de130dac4c6e57da0446d9db00 https://www.encodeproject.org/files/ENCFF217CGB/@@download/ENCFF217CGB.bam mm10 released s3://encode-public/2016/12/05/aa8febc1-746e-4a76-bf84-86d8d0e37bed/ENCFF217CGB.bam experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF164GYW bed narrowPeak peaks ENCSR826JKN ATAC-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus DNA False 2017-03-07 GGR 1 ENCFF217CGB, ENCFF515NYO 1759190 Christina Leslie, MSKCC 5353e848b0b28f60ef3255833afcbd19 https://www.encodeproject.org/files/ENCFF164GYW/@@download/ENCFF164GYW.bed.gz mm10 released s3://encode-public/2017/01/09/65cc7101-b985-47c4-8a25-3331f2f1d8f2/ENCFF164GYW.bed.gz experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF051GLX fastq reads ENCSR603MWL ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF385WYM 812295858 Bing Ren, UCSD d510757f892880ea826b5d0d0b38a719 https://www.encodeproject.org/files/ENCFF051GLX/@@download/ENCFF051GLX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/105ff587-f4a0-4e03-8546-69939718a72e/ENCFF051GLX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF694SPD fastq reads ENCSR603MWL ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF829XFO 980143589 Bing Ren, UCSD 273467e3e70f9557d4f4f87ace0fe3cb https://www.encodeproject.org/files/ENCFF694SPD/@@download/ENCFF694SPD.fastq.gz Illumina HiSeq 4000 released 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s3://encode-public/2017/03/14/03abbd9c-f1f6-4b46-8bc9-4d3554556b23/ENCFF940GZL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF217WJG fastq reads ENCSR668EIA ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF507MHY 712676562 Bing Ren, UCSD 86043d83c65d10b13465291601ee737c https://www.encodeproject.org/files/ENCFF217WJG/@@download/ENCFF217WJG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/14ecc1c3-07ae-4f3e-a429-49e12af77eb3/ENCFF217WJG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF159YPF fastq reads ENCSR668EIA ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF940GZL 1471638494 Bing Ren, UCSD 9be2a514c7fcff6b23839059bc9f057b https://www.encodeproject.org/files/ENCFF159YPF/@@download/ENCFF159YPF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/0049f5a6-8ede-4775-8bfc-111259060053/ENCFF159YPF.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF086MTT fastq reads ENCSR652CNN ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF719RSO 1667379072 Bing Ren, UCSD 665b6cf85e16db89eb6b9fc809bdffe6 https://www.encodeproject.org/files/ENCFF086MTT/@@download/ENCFF086MTT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/3b964cdb-49ee-4657-9d20-65bc844374da/ENCFF086MTT.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF982JWB fastq reads ENCSR652CNN ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF377YCK 1641298151 Bing Ren, UCSD 43239c3f45c18ffe63aedcba64d935ec https://www.encodeproject.org/files/ENCFF982JWB/@@download/ENCFF982JWB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/d7571af1-8a4b-4c9d-bab0-edeefdc61b14/ENCFF982JWB.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF719RSO fastq reads ENCSR652CNN ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF086MTT 1494909496 Bing Ren, UCSD a2717bf10e6267680ef25280317b94b0 https://www.encodeproject.org/files/ENCFF719RSO/@@download/ENCFF719RSO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/b5b31a95-8f94-4124-a091-2721dd785e86/ENCFF719RSO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF377YCK fastq reads ENCSR652CNN ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF982JWB 1497329860 Bing Ren, UCSD 36413aefcf144de73c65612f29e14a58 https://www.encodeproject.org/files/ENCFF377YCK/@@download/ENCFF377YCK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/c9a80099-e362-44ff-b7ee-77acfe69c945/ENCFF377YCK.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF642UHQ fastq reads ENCSR150EOO ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF188JXF 1021760562 Bing Ren, UCSD 21494632c1510bc37862762c5f68b8c3 https://www.encodeproject.org/files/ENCFF642UHQ/@@download/ENCFF642UHQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/58305f16-7548-4434-9f6a-601bd7bbecfb/ENCFF642UHQ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF243SQC fastq reads ENCSR150EOO ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF593JRX 1376527955 Bing Ren, UCSD 4d8a961cb9b449b231b3ba71a81e5963 https://www.encodeproject.org/files/ENCFF243SQC/@@download/ENCFF243SQC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/1dc4eca8-fca2-4336-bdd8-0d8e9da02435/ENCFF243SQC.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF593JRX fastq reads ENCSR150EOO ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF243SQC 1268169160 Bing Ren, UCSD 72d4431575be518050b9715d5c271160 https://www.encodeproject.org/files/ENCFF593JRX/@@download/ENCFF593JRX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/31360bab-055a-4efb-9e3c-85d6cda7028a/ENCFF593JRX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF188JXF fastq reads ENCSR150EOO ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF642UHQ 1131688732 Bing Ren, UCSD dc0eaaa4ca804d1f952783d0c074e320 https://www.encodeproject.org/files/ENCFF188JXF/@@download/ENCFF188JXF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/788b4179-9e73-4d78-b7e6-7ee11c83c6f5/ENCFF188JXF.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF994STU fastq reads ENCSR282YTE ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF187AQG 1124170120 Bing Ren, UCSD 7dc1b3faa1796ac9d1e9748802cc5fd1 https://www.encodeproject.org/files/ENCFF994STU/@@download/ENCFF994STU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/5ce7deaf-a6f6-4141-a814-bbb75c16cded/ENCFF994STU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF187AQG fastq reads ENCSR282YTE ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF994STU 962080283 Bing Ren, UCSD 1828b1e3110dfdc4f7fa23c26f1def77 https://www.encodeproject.org/files/ENCFF187AQG/@@download/ENCFF187AQG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/d5eb80ad-a9e8-47cc-872e-21fc68731872/ENCFF187AQG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF149EJI fastq reads ENCSR282YTE ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 51 paired-ended 2 ENCFF529IDC 1918727258 Bing Ren, UCSD e91b8691de5fa4f50fcda123df0e5a45 https://www.encodeproject.org/files/ENCFF149EJI/@@download/ENCFF149EJI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/04/15/980b1b2b-a645-4206-bab5-c559a0bd6dbf/ENCFF149EJI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF529IDC fastq reads ENCSR282YTE ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 51 paired-ended 1 ENCFF149EJI 1678624340 Bing Ren, UCSD ffbeef5e18c77dede0d11ea3a1dfeab4 https://www.encodeproject.org/files/ENCFF529IDC/@@download/ENCFF529IDC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/04/15/6cf40f08-bfae-44ff-b287-b142efd55d9d/ENCFF529IDC.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF444RRA fastq reads ENCSR690VOH ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF226GOU 1481115314 Bing Ren, UCSD 9442ba40f6f124adf5000f802fdbad87 https://www.encodeproject.org/files/ENCFF444RRA/@@download/ENCFF444RRA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/824a5d34-6ff4-4f58-8515-52941634c190/ENCFF444RRA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF927BDD fastq reads ENCSR690VOH ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF303PPN 1307091014 Bing Ren, UCSD 9acd51859e3e0bb4cd4a0b592f89ad69 https://www.encodeproject.org/files/ENCFF927BDD/@@download/ENCFF927BDD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/b685f721-a8b9-41fc-8617-099cf5e29ead/ENCFF927BDD.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF226GOU fastq reads ENCSR690VOH ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF444RRA 1259779262 Bing Ren, UCSD eb207253c5c858c7d75d235181411ced https://www.encodeproject.org/files/ENCFF226GOU/@@download/ENCFF226GOU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/705d5ad8-13b7-4918-9311-e38f63d4762e/ENCFF226GOU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF303PPN fastq reads ENCSR690VOH ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF927BDD 1296667115 Bing Ren, UCSD 122426278f5d63ef6eccf8ecf27a38b1 https://www.encodeproject.org/files/ENCFF303PPN/@@download/ENCFF303PPN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/3cbbdfd6-4f58-4eea-b900-bd887d0e909e/ENCFF303PPN.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF954UEC fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 1 ENCFF792EKC 2832373084 Michael Snyder, Stanford 4191f8c24aa9b63e562dd0604ce44014 https://www.encodeproject.org/files/ENCFF954UEC/@@download/ENCFF954UEC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/947ffd23-c7d0-43a7-9611-1592aadfbf27/ENCFF954UEC.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF361CBZ fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 1 ENCFF498RTW 2172640860 Michael Snyder, Stanford 0cc4240277eabc56d5aa58d01ee68e01 https://www.encodeproject.org/files/ENCFF361CBZ/@@download/ENCFF361CBZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/6cc4658d-0f2d-465c-b5bb-54b623dc333b/ENCFF361CBZ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF016WGG fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 1 ENCFF682VWZ 2104959475 Michael Snyder, Stanford 6b736ac3e2025875d76547de2b5a0727 https://www.encodeproject.org/files/ENCFF016WGG/@@download/ENCFF016WGG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/ecfbbf87-a212-47a8-9436-2014c6bf7495/ENCFF016WGG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF792EKC fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 2 ENCFF954UEC 3117583656 Michael Snyder, Stanford 99a2203932804df8976498c7aec6e9bc https://www.encodeproject.org/files/ENCFF792EKC/@@download/ENCFF792EKC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/f6a27e0a-6413-45ae-9c55-5278f8d86a03/ENCFF792EKC.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF728RJV fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 1 ENCFF218HFA 2019616407 Michael Snyder, Stanford 1007d1357c16bc8db86028c61137a1dc https://www.encodeproject.org/files/ENCFF728RJV/@@download/ENCFF728RJV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/c01ae41c-be11-4333-8210-fced4db5351d/ENCFF728RJV.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF829SBE fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 2 ENCFF154KNN 2136544377 Michael Snyder, Stanford aa55e829152fe2e8d58032fbc1e808f8 https://www.encodeproject.org/files/ENCFF829SBE/@@download/ENCFF829SBE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/f0f5d58a-792c-4476-a395-0119bbeb0092/ENCFF829SBE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF294HDC fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 1 5 76 paired-ended 1 ENCFF354TGE 230300038 Michael Snyder, Stanford 63583f8ea9c925b14f6d1d77784e5d68 https://www.encodeproject.org/files/ENCFF294HDC/@@download/ENCFF294HDC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/5ca76857-7aa6-4f67-b67a-90ff7f5ffeae/ENCFF294HDC.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF709FLO fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 1 ENCFF396BSZ 1855077411 Michael Snyder, Stanford 1ede47572f3090cf3f13c18e4b7c8a74 https://www.encodeproject.org/files/ENCFF709FLO/@@download/ENCFF709FLO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/44b79f2b-36a6-4bb2-ac3b-2b8a16368767/ENCFF709FLO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF803XRX fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 2 ENCFF351LRE 1286941603 Michael Snyder, Stanford 3df8389dd7bad05f677425a3ae123798 https://www.encodeproject.org/files/ENCFF803XRX/@@download/ENCFF803XRX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/e335734d-f1d6-454c-8e53-7dd4a2c5da31/ENCFF803XRX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF218HFA fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 2 ENCFF728RJV 2112213578 Michael Snyder, Stanford 00d4a47baf908d4e356da87588430a47 https://www.encodeproject.org/files/ENCFF218HFA/@@download/ENCFF218HFA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/bfea1a3f-c81d-4171-aed7-c1151d507afc/ENCFF218HFA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF498RTW fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 2 ENCFF361CBZ 2230917787 Michael Snyder, Stanford fa444b86962d84797e76f8679d124c1a https://www.encodeproject.org/files/ENCFF498RTW/@@download/ENCFF498RTW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/c8fd7349-a9cd-486c-bfe1-9ebb1e6f44ad/ENCFF498RTW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF354TGE fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 1 5 76 paired-ended 2 ENCFF294HDC 234268173 Michael Snyder, Stanford d22913fe5d3affb47ed6764f77359616 https://www.encodeproject.org/files/ENCFF354TGE/@@download/ENCFF354TGE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/273fe029-6519-4b75-a7f4-81e2c41fbad6/ENCFF354TGE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF396BSZ fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 2 ENCFF709FLO 2023896966 Michael Snyder, Stanford 190023e67caaf8be043060d7c17eab20 https://www.encodeproject.org/files/ENCFF396BSZ/@@download/ENCFF396BSZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/e71f0a26-5b2e-43cc-836d-e13cf5503c2a/ENCFF396BSZ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF154KNN fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 1 ENCFF829SBE 1946153442 Michael Snyder, Stanford 77932de19789ab32198091f7d42afadf https://www.encodeproject.org/files/ENCFF154KNN/@@download/ENCFF154KNN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/2eb0e255-9675-4f69-a854-7af42ac0aa2a/ENCFF154KNN.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF565CVN fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 1 ENCFF092IJN 1230191596 Michael Snyder, Stanford d456c6fd9df6254a87b799599d2467f3 https://www.encodeproject.org/files/ENCFF565CVN/@@download/ENCFF565CVN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/9e4fbbf9-8731-4ac4-ae54-82fb8109d3b5/ENCFF565CVN.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF247VZG fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 1 ENCFF738DHW 1616989437 Michael Snyder, Stanford 556b984284cf0f72b47acfc302447722 https://www.encodeproject.org/files/ENCFF247VZG/@@download/ENCFF247VZG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/5a789617-037b-4795-8c33-bac2725606e7/ENCFF247VZG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF351LRE fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 1 ENCFF803XRX 1168324587 Michael Snyder, Stanford 2f44472b8e5d137bba13f6ff541cad10 https://www.encodeproject.org/files/ENCFF351LRE/@@download/ENCFF351LRE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/c406d511-b372-4f9a-8127-d8f1a61ada41/ENCFF351LRE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF738DHW fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 2 ENCFF247VZG 1677755186 Michael Snyder, Stanford a14f9b92042ecbe948f502a9ab3ba68f https://www.encodeproject.org/files/ENCFF738DHW/@@download/ENCFF738DHW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/9ea7843f-3fc7-48f4-af9e-da3170354bca/ENCFF738DHW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF682VWZ fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 2 ENCFF016WGG 2291833909 Michael Snyder, Stanford 83efd8e14069f555072ff1cd865b70b4 https://www.encodeproject.org/files/ENCFF682VWZ/@@download/ENCFF682VWZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/ebe0c73f-fa1b-4b4f-9e4a-b7fac91b7e29/ENCFF682VWZ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF092IJN fastq reads ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 2 ENCFF565CVN 1291683882 Michael Snyder, Stanford 2f6d00caaa6392718cb749aa38403357 https://www.encodeproject.org/files/ENCFF092IJN/@@download/ENCFF092IJN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/58758e9f-0e59-409a-9016-dcc318294a48/ENCFF092IJN.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF205KDV bam alignments ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 2 ENCFF092IJN, ENCFF154KNN, ENCFF247VZG, ENCFF351LRE, ENCFF396BSZ, ENCFF565CVN, ENCFF709FLO, ENCFF738DHW, ENCFF803XRX, ENCFF829SBE 7231284840 Anshul Kundaje, Stanford 215e214faa8ac78b554bf2a1028c80b3 https://www.encodeproject.org/files/ENCFF205KDV/@@download/ENCFF205KDV.bam GRCh38 released s3://encode-public/2017/04/01/2dffe399-643d-4341-8535-d65b7f9f8f6e/ENCFF205KDV.bam mismatched file status, experiment not submitted to GEO ENCFF479UTZ bam alignments ENCSR245LNF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day DNA False 2017-10-10 GGR 1 ENCFF016WGG, ENCFF218HFA, ENCFF294HDC, ENCFF354TGE, ENCFF361CBZ, ENCFF498RTW, ENCFF682VWZ, ENCFF728RJV, ENCFF792EKC, ENCFF954UEC 5956231238 Anshul Kundaje, Stanford e25db3067421be770ae3e7ee7bcfbff0 https://www.encodeproject.org/files/ENCFF479UTZ/@@download/ENCFF479UTZ.bam GRCh38 released s3://encode-public/2017/04/01/902de167-8c17-4b49-8d69-33863a52c5b2/ENCFF479UTZ.bam mismatched file status, experiment not submitted to GEO ENCFF159HYY fastq reads ENCSR032HKE ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF911HQX 1034211550 Bing Ren, UCSD 76ed07187887f86687fa5d0d26737324 https://www.encodeproject.org/files/ENCFF159HYY/@@download/ENCFF159HYY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/ecf8115f-c590-416d-bac4-2b4910d62108/ENCFF159HYY.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF911HQX fastq reads ENCSR032HKE ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF159HYY 1130103383 Bing Ren, UCSD a9b63a5f1034cb4adeb70515a24fcd76 https://www.encodeproject.org/files/ENCFF911HQX/@@download/ENCFF911HQX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/29408927-92af-46e3-bc6e-66f643327743/ENCFF911HQX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF618OJP fastq reads ENCSR032HKE ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF863FZP 2524495609 Bing Ren, UCSD 952a7bdbbc42cbd0872468063afa5c9a https://www.encodeproject.org/files/ENCFF618OJP/@@download/ENCFF618OJP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/bb08c037-6609-4f42-b434-8f33052cf906/ENCFF618OJP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF863FZP fastq reads ENCSR032HKE ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF618OJP 2676571404 Bing Ren, UCSD cedbc5e2ef2c76d5857775fc753102b8 https://www.encodeproject.org/files/ENCFF863FZP/@@download/ENCFF863FZP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/130b5f65-0aa7-412c-96a0-76e0b5932200/ENCFF863FZP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF210QPG fastq reads ENCSR654UYP ATAC-seq UBERON:0008367 breast epithelium tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF180RBC 5124724762 Michael Snyder, Stanford f1d34cd9f19e9a033fc71c792761d002 https://www.encodeproject.org/files/ENCFF210QPG/@@download/ENCFF210QPG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/b50a0ebf-43e2-40d3-b1b5-25e9deeac973/ENCFF210QPG.fastq.gz experiment not submitted to GEO ENCFF180RBC fastq reads ENCSR654UYP ATAC-seq UBERON:0008367 breast epithelium tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF210QPG 5430245431 Michael Snyder, Stanford 2f9f4936471e629158c5fd35c451f729 https://www.encodeproject.org/files/ENCFF180RBC/@@download/ENCFF180RBC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/38c0c88b-567e-49f2-9ab6-d9bff3271efb/ENCFF180RBC.fastq.gz experiment not submitted to GEO ENCFF585YAB bam alignments ENCSR654UYP ATAC-seq UBERON:0008367 breast epithelium tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF180RBC, ENCFF210QPG 6813331422 Anshul Kundaje, Stanford 5eaaf3c1eb2d8da8ad31c1e808cb59f4 https://www.encodeproject.org/files/ENCFF585YAB/@@download/ENCFF585YAB.bam GRCh38 released s3://encode-public/2016/12/22/74c852a4-d609-494e-9213-5a5607c21529/ENCFF585YAB.bam experiment not submitted to GEO ENCFF437NPA bigWig signal p-value ENCSR654UYP ATAC-seq UBERON:0008367 breast epithelium tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF585YAB 1391307604 Anshul Kundaje, Stanford 5e745b143621c6776dacaf0452c035c5 https://www.encodeproject.org/files/ENCFF437NPA/@@download/ENCFF437NPA.bigWig GRCh38 released s3://encode-public/2016/12/22/256014fb-6ca0-44bf-a402-491d866438f5/ENCFF437NPA.bigWig experiment not submitted to GEO ENCFF353GGX bigWig fold change over control ENCSR654UYP ATAC-seq UBERON:0008367 breast epithelium tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF585YAB 1715879179 Anshul Kundaje, Stanford 6733274cf3d6052011d267c71cf4d729 https://www.encodeproject.org/files/ENCFF353GGX/@@download/ENCFF353GGX.bigWig GRCh38 released s3://encode-public/2016/12/22/3d30e600-ce9d-4769-be78-5a6e6d7b729c/ENCFF353GGX.bigWig experiment not submitted to GEO ENCFF898FIK fastq reads ENCSR966ORC ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF278MAA 1907062263 Bing Ren, UCSD 7e73e190247769b47af0dc3ba2b32594 https://www.encodeproject.org/files/ENCFF898FIK/@@download/ENCFF898FIK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/7b224327-9da8-4cdb-928e-97f28bc2a772/ENCFF898FIK.fastq.gz experiment not submitted to GEO ENCFF896RTV fastq reads ENCSR966ORC ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF880CTO 1967869931 Bing Ren, UCSD f11d8de1ec7087823e68f413542a2469 https://www.encodeproject.org/files/ENCFF896RTV/@@download/ENCFF896RTV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/c42bf0b1-c309-4ad9-9c1c-76ea7e100e2f/ENCFF896RTV.fastq.gz experiment not submitted to GEO ENCFF278MAA fastq reads ENCSR966ORC ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF898FIK 1751793833 Bing Ren, UCSD 863d3cef7ff894b0f2f7ad3bc8d3e472 https://www.encodeproject.org/files/ENCFF278MAA/@@download/ENCFF278MAA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/eccc74a0-e0e2-4757-bacc-95b2426942ae/ENCFF278MAA.fastq.gz experiment not submitted to GEO ENCFF880CTO fastq reads ENCSR966ORC ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF896RTV 1828121842 Bing Ren, UCSD 7b62dfb30c3eb0fb394cb2674ba7d840 https://www.encodeproject.org/files/ENCFF880CTO/@@download/ENCFF880CTO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/790c4ea7-ef28-4509-a39c-4327cbc4e956/ENCFF880CTO.fastq.gz experiment not submitted to GEO ENCFF567OSZ bam alignments ENCSR966ORC ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF278MAA, ENCFF898FIK 3435676627 Anshul Kundaje, Stanford 7d7b0387236458fdca39d1b90a1795da https://www.encodeproject.org/files/ENCFF567OSZ/@@download/ENCFF567OSZ.bam mm10 released s3://encode-public/2017/04/25/120cd6ab-2f5c-4b78-9bdf-81f6ee8bb3a4/ENCFF567OSZ.bam experiment not submitted to GEO ENCFF397MHJ bam alignments ENCSR966ORC ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF880CTO, ENCFF896RTV 3616154860 Anshul Kundaje, Stanford fbb12fd06659a5f6036359e2393392c9 https://www.encodeproject.org/files/ENCFF397MHJ/@@download/ENCFF397MHJ.bam mm10 released s3://encode-public/2017/04/25/b181bd8f-e60a-4488-9487-f9e3186005b3/ENCFF397MHJ.bam experiment not submitted to GEO ENCFF913SHP bigWig signal p-value ENCSR966ORC ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF397MHJ 696538423 Anshul Kundaje, Stanford e69332e67ab80503779655a1dcf1bb9e https://www.encodeproject.org/files/ENCFF913SHP/@@download/ENCFF913SHP.bigWig mm10 released s3://encode-public/2017/04/25/07394985-fcd6-4b9a-9235-6b4c8cc60f68/ENCFF913SHP.bigWig experiment not submitted to GEO ENCFF685VCZ bigWig signal p-value ENCSR966ORC ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF567OSZ 603565381 Anshul Kundaje, Stanford a90b5f66fd381c437a7736a932e158d4 https://www.encodeproject.org/files/ENCFF685VCZ/@@download/ENCFF685VCZ.bigWig mm10 released s3://encode-public/2017/04/25/62c1b137-e08a-48bc-bba1-0de0b6e99dd0/ENCFF685VCZ.bigWig experiment not submitted to GEO ENCFF330FCS bigWig fold change over control ENCSR966ORC ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF567OSZ 849415740 Anshul Kundaje, Stanford 39fccd9ab746e32d1cee0a6f6dbce84e https://www.encodeproject.org/files/ENCFF330FCS/@@download/ENCFF330FCS.bigWig mm10 released s3://encode-public/2017/04/26/99e88eaf-7a51-4d88-b7df-3c212289a45b/ENCFF330FCS.bigWig experiment not submitted to GEO ENCFF258MGU bigWig fold change over control ENCSR966ORC ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF397MHJ 876524143 Anshul Kundaje, Stanford 23e0e21ad3d029f639d19039d3ac5f28 https://www.encodeproject.org/files/ENCFF258MGU/@@download/ENCFF258MGU.bigWig mm10 released s3://encode-public/2017/04/26/ad5bb0fa-b888-4d9c-a44e-945ca0d7d74b/ENCFF258MGU.bigWig experiment not submitted to GEO ENCFF574WBE fastq reads ENCSR846VLJ ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF911ROA 5034269388 Michael Snyder, Stanford a335a6c16c11a76d5ca7a6f02fd2df32 https://www.encodeproject.org/files/ENCFF574WBE/@@download/ENCFF574WBE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/fe006647-4aee-43f3-a632-349a62f9c853/ENCFF574WBE.fastq.gz experiment not submitted to GEO ENCFF911ROA fastq reads ENCSR846VLJ ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF574WBE 4773156579 Michael Snyder, Stanford 4a07b3dd7fbd6b3f68376f8297e338b8 https://www.encodeproject.org/files/ENCFF911ROA/@@download/ENCFF911ROA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/2e366518-6ab5-4d88-a013-448e094cf826/ENCFF911ROA.fastq.gz experiment not submitted to GEO ENCFF692DLP bam alignments ENCSR846VLJ ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF574WBE, ENCFF911ROA 5712081857 Anshul Kundaje, Stanford b7fd732e150aab359eda314722692e10 https://www.encodeproject.org/files/ENCFF692DLP/@@download/ENCFF692DLP.bam GRCh38 released s3://encode-public/2016/12/22/b0f97c12-f497-4ac3-b6af-ebd9766f8dd9/ENCFF692DLP.bam experiment not submitted to GEO ENCFF325NJC bigWig fold change over control ENCSR846VLJ ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF692DLP 1046623946 Anshul Kundaje, Stanford b23bfb124a88c93fa7851b152d417c0c https://www.encodeproject.org/files/ENCFF325NJC/@@download/ENCFF325NJC.bigWig GRCh38 released s3://encode-public/2016/12/22/54e1824a-1c2f-4830-abdf-2938a62cf3a8/ENCFF325NJC.bigWig experiment not submitted to GEO ENCFF526RMY bigWig signal p-value ENCSR846VLJ ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF692DLP 669119208 Anshul Kundaje, Stanford 0b3e05aaf5a892ab0559deef87b6e35c https://www.encodeproject.org/files/ENCFF526RMY/@@download/ENCFF526RMY.bigWig GRCh38 released s3://encode-public/2016/12/22/9bf4398c-c643-4411-850a-ba26eaf828a6/ENCFF526RMY.bigWig experiment not submitted to GEO ENCFF968KAQ fastq reads ENCSR689SDA ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 1 ENCFF797AHS 2617513035 Michael Snyder, Stanford b7881e069392108551a73bdc0669b057 https://www.encodeproject.org/files/ENCFF968KAQ/@@download/ENCFF968KAQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/31/1effa953-01c1-49ba-b04f-468d94121d05/ENCFF968KAQ.fastq.gz experiment not submitted to GEO ENCFF797AHS fastq reads ENCSR689SDA ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 2 ENCFF968KAQ 2840981805 Michael Snyder, Stanford 1316e5d43bf6cd0be97b2123b63259ce https://www.encodeproject.org/files/ENCFF797AHS/@@download/ENCFF797AHS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/31/efdeb10c-c7dd-43d2-a71c-e14a0c74c82e/ENCFF797AHS.fastq.gz experiment not submitted to GEO ENCFF086TID bam alignments ENCSR689SDA ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF797AHS, ENCFF968KAQ 3940472213 Anshul Kundaje, Stanford a08a558c0c3069b6f59a5a90cd30118f https://www.encodeproject.org/files/ENCFF086TID/@@download/ENCFF086TID.bam GRCh38 released s3://encode-public/2017/02/08/abec7203-253a-42aa-9cc9-b8367719b2de/ENCFF086TID.bam experiment not submitted to GEO ENCFF110ZCZ bigWig signal p-value ENCSR689SDA ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF086TID 604508186 Anshul Kundaje, Stanford 20d7cc6187615404a1955b162b0922ea https://www.encodeproject.org/files/ENCFF110ZCZ/@@download/ENCFF110ZCZ.bigWig GRCh38 released s3://encode-public/2017/02/08/a313d54b-36a6-48de-9a7c-2d7887ded054/ENCFF110ZCZ.bigWig experiment not submitted to GEO ENCFF069UEK bigWig fold change over control ENCSR689SDA ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF086TID 907667634 Anshul Kundaje, Stanford e008a74f2b29a73d442a2a305baff79e https://www.encodeproject.org/files/ENCFF069UEK/@@download/ENCFF069UEK.bigWig GRCh38 released s3://encode-public/2017/02/08/6eca9490-d50d-4470-9d78-44849881e68b/ENCFF069UEK.bigWig experiment not submitted to GEO ENCFF564OUO fastq reads ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 1 ENCFF008DNY 1333821272 Michael Snyder, Stanford d03f5313df1620b93e23bb122c452582 https://www.encodeproject.org/files/ENCFF564OUO/@@download/ENCFF564OUO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/2f14fbf9-21b0-4382-9363-aa2443139e5a/ENCFF564OUO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF256MSA fastq reads ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 2 ENCFF422QIJ 2354868368 Michael Snyder, Stanford 2af5008a333ac136e5ee50849e439095 https://www.encodeproject.org/files/ENCFF256MSA/@@download/ENCFF256MSA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d5e5ab3c-213d-4f29-b9cd-a79e76e6c58a/ENCFF256MSA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF792MLQ fastq reads ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 1 ENCFF968PTT 1142790968 Michael Snyder, Stanford 554b6f6cf5da4ce8a496e0003115c20e https://www.encodeproject.org/files/ENCFF792MLQ/@@download/ENCFF792MLQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/4033c4b6-f470-4239-b034-d97eff455b1c/ENCFF792MLQ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF968PTT fastq reads ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 2 ENCFF792MLQ 1129565570 Michael Snyder, Stanford 2227f073f1f0bbc17abff6ecb372ffa0 https://www.encodeproject.org/files/ENCFF968PTT/@@download/ENCFF968PTT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/9f8b0333-c854-4bb9-9e6b-38a3684e73eb/ENCFF968PTT.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF018JJG fastq reads ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 1 ENCFF013WVO 2029813349 Michael Snyder, Stanford ac662c98a53745f223e9120266b56058 https://www.encodeproject.org/files/ENCFF018JJG/@@download/ENCFF018JJG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/12ce7576-37e5-401b-8a9b-5faff270c266/ENCFF018JJG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF361YRS fastq reads ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 1 ENCFF793EJO 1575138339 Michael Snyder, Stanford 902bfd1fee0e21b80edad1b958c9bc71 https://www.encodeproject.org/files/ENCFF361YRS/@@download/ENCFF361YRS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/9ecbf4d4-4992-49d2-96b4-6dfa242d6210/ENCFF361YRS.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF422QIJ fastq reads ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 1 ENCFF256MSA 2148772785 Michael Snyder, Stanford 19573c5bdde523f00bbe11ce7e083c5e https://www.encodeproject.org/files/ENCFF422QIJ/@@download/ENCFF422QIJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/736775e7-9b28-4f16-9ca6-aeba8d2fbeb7/ENCFF422QIJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF419LTU fastq reads ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 2 ENCFF217MLO 3020009706 Michael Snyder, Stanford 0c63e5d379d6ef9a5c466e391a5d3dba https://www.encodeproject.org/files/ENCFF419LTU/@@download/ENCFF419LTU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/0691362a-4169-427d-85b3-a47ed02eedde/ENCFF419LTU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF217MLO fastq reads ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 1 ENCFF419LTU 2772454747 Michael Snyder, Stanford 1d95418735535a560b063149b0f617c7 https://www.encodeproject.org/files/ENCFF217MLO/@@download/ENCFF217MLO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/192b9861-0d45-42d4-8f38-4b5562e28dc8/ENCFF217MLO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF013WVO fastq reads ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 2 ENCFF018JJG 2118361937 Michael Snyder, Stanford c68fe0b5a7b9d43b1ad52bbf6de67b58 https://www.encodeproject.org/files/ENCFF013WVO/@@download/ENCFF013WVO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d025e909-0031-4977-844e-8999282d1d88/ENCFF013WVO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF793EJO fastq reads ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 2 ENCFF361YRS 1637028387 Michael Snyder, Stanford 90b5c638f9b9e84b31c022018c4721f5 https://www.encodeproject.org/files/ENCFF793EJO/@@download/ENCFF793EJO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d09c7f03-070d-47b6-8afb-a9c0739f13f1/ENCFF793EJO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF881RKR fastq reads ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 1 ENCFF304KND 2360582029 Michael Snyder, Stanford 29f61853a5d48a7f4ea04e3a4b9e7e2b https://www.encodeproject.org/files/ENCFF881RKR/@@download/ENCFF881RKR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/87defbef-3d0b-4473-815c-dbfaa8cab0c5/ENCFF881RKR.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF304KND fastq reads ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 2 ENCFF881RKR 2486708251 Michael Snyder, Stanford e7444553b283cdae81b4a6f957a0c5e5 https://www.encodeproject.org/files/ENCFF304KND/@@download/ENCFF304KND.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/01c47e2b-bc60-4ab6-88ee-1140329bdc46/ENCFF304KND.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF008DNY fastq reads ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 2 ENCFF564OUO 1475716203 Michael Snyder, Stanford 981af3d289ee4d92a017feffedaa50fa https://www.encodeproject.org/files/ENCFF008DNY/@@download/ENCFF008DNY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/6b05bde7-d1e9-4338-9ccd-199912af7fde/ENCFF008DNY.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF927PPE bam alignments ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 2 ENCFF008DNY, ENCFF217MLO, ENCFF304KND, ENCFF361YRS, ENCFF419LTU, ENCFF564OUO, ENCFF793EJO, ENCFF881RKR 8287178246 Anshul Kundaje, Stanford 0d4f9e63e6ca8b5c187569a57395fd2a https://www.encodeproject.org/files/ENCFF927PPE/@@download/ENCFF927PPE.bam GRCh38 released s3://encode-public/2017/04/01/63d991a9-0dd9-4202-ab13-38d7084bd221/ENCFF927PPE.bam mismatched file status, experiment not submitted to GEO ENCFF629VEK bam alignments ENCSR247PVM ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1 day DNA False 2017-10-10 GGR 1 ENCFF013WVO, ENCFF018JJG, ENCFF256MSA, ENCFF422QIJ, ENCFF792MLQ, ENCFF968PTT 5529147440 Anshul Kundaje, Stanford 0a1d439ec36370bed2391abb2e66328b https://www.encodeproject.org/files/ENCFF629VEK/@@download/ENCFF629VEK.bam GRCh38 released s3://encode-public/2017/04/01/9eba7ce3-b9b3-4d60-b010-00f12deadac6/ENCFF629VEK.bam mismatched file status, experiment not submitted to GEO ENCFF788TPW fastq reads ENCSR498DQA ATAC-seq CL:0000556 megakaryocyte primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 48 single-ended 4481171181 Ross Hardison, PennState c01a6bb79e4440575def6bd5039e1466 https://www.encodeproject.org/files/ENCFF788TPW/@@download/ENCFF788TPW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/b337645b-c349-43a4-ae84-52814da2060f/ENCFF788TPW.fastq.gz inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF943WTV fastq reads ENCSR498DQA ATAC-seq CL:0000556 megakaryocyte primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 48 single-ended 4786142908 Ross Hardison, PennState b0683e3183b92e807f0c55681f4e8828 https://www.encodeproject.org/files/ENCFF943WTV/@@download/ENCFF943WTV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/0883bcc6-8ce8-429f-8747-4733fe660323/ENCFF943WTV.fastq.gz inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF647NFF bam alignments ENCSR498DQA ATAC-seq CL:0000556 megakaryocyte primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF943WTV 3454952864 Ross Hardison, PennState 905512b425d4813f9cb61a31049f7477 https://www.encodeproject.org/files/ENCFF647NFF/@@download/ENCFF647NFF.bam mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/24b225a3-d337-43f4-9189-c6c842f93f86/ENCFF647NFF.bam inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF574UZG bam alignments ENCSR498DQA ATAC-seq CL:0000556 megakaryocyte primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF788TPW 3219750675 Ross Hardison, PennState 7a1ab3ffeda825122e04ae32042c1992 https://www.encodeproject.org/files/ENCFF574UZG/@@download/ENCFF574UZG.bam mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/3e13acc9-3022-43ce-bbf9-5e6c43c6aff5/ENCFF574UZG.bam inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF903HYM bigWig signal of all reads ENCSR498DQA ATAC-seq CL:0000556 megakaryocyte primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF647NFF 3215297207 Ross Hardison, PennState 2ab483cca29c9db0c6e1aa2019377f61 https://www.encodeproject.org/files/ENCFF903HYM/@@download/ENCFF903HYM.bigWig mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/5af9e18e-0732-4eef-be43-23d4c72b0e99/ENCFF903HYM.bigWig inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF265BBQ bigBed bed3+ peaks ENCSR498DQA ATAC-seq CL:0000556 megakaryocyte primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF647NFF 3222025 Ross Hardison, PennState 76b488a9037868b70ef14fd87e8e62ae https://www.encodeproject.org/files/ENCFF265BBQ/@@download/ENCFF265BBQ.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/9bee7672-888d-4f26-ae9d-b58a2f8ef14d/ENCFF265BBQ.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF426TVV bigBed narrowPeak open chromatin regions ENCSR498DQA ATAC-seq CL:0000556 megakaryocyte primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF647NFF 7458275 Ross Hardison, PennState 7d6935ebb40ee4a02dd2471318aa52c3 https://www.encodeproject.org/files/ENCFF426TVV/@@download/ENCFF426TVV.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/c9b53507-080f-4382-835b-6e3cf111a2d6/ENCFF426TVV.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF272GDX bigBed bed3+ filtered peaks ENCSR498DQA ATAC-seq CL:0000556 megakaryocyte primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF265BBQ, ENCFF790DJT 3166436 Ross Hardison, PennState 0f56324de866d63c27574500e53bb52e https://www.encodeproject.org/files/ENCFF272GDX/@@download/ENCFF272GDX.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/2a03aec2-ee2b-47a0-8386-3e818eb70459/ENCFF272GDX.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF283ETQ bigBed narrowPeak open chromatin regions ENCSR498DQA ATAC-seq CL:0000556 megakaryocyte primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF574UZG 6358359 Ross Hardison, PennState d16e00b92cfab88bca14d27ebffcda9c https://www.encodeproject.org/files/ENCFF283ETQ/@@download/ENCFF283ETQ.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/a486dd24-609f-4c16-8a1b-ac6949e88cc3/ENCFF283ETQ.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF381HUT bigBed narrowPeak filtered regions ENCSR498DQA ATAC-seq CL:0000556 megakaryocyte primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF426TVV, ENCFF790DJT 3158912 Ross Hardison, PennState e758f5d3fb6c010c522f8d46cda1553e https://www.encodeproject.org/files/ENCFF381HUT/@@download/ENCFF381HUT.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/2358ecd3-d8be-46cc-b601-dc40b83b2931/ENCFF381HUT.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF687YKQ bigBed narrowPeak filtered regions ENCSR498DQA ATAC-seq CL:0000556 megakaryocyte primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF283ETQ, ENCFF790DJT 3171256 Ross Hardison, PennState a4ebbefb8b5522c6b49e32303432c511 https://www.encodeproject.org/files/ENCFF687YKQ/@@download/ENCFF687YKQ.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/ca5acb54-e26f-4b79-b07f-5f1f58ca9da9/ENCFF687YKQ.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF872QOS bigWig signal of all reads ENCSR498DQA ATAC-seq CL:0000556 megakaryocyte primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF574UZG 3190499499 Ross Hardison, PennState 9a744853f9ad2e0caf95d8628c0d1792 https://www.encodeproject.org/files/ENCFF872QOS/@@download/ENCFF872QOS.bigWig mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/18c734ee-7950-47be-83bd-28e8c23d2ef5/ENCFF872QOS.bigWig inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF342UPW bigBed bed3+ peaks ENCSR498DQA ATAC-seq CL:0000556 megakaryocyte primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF574UZG 3187914 Ross Hardison, PennState 4fa179326523bacc3b8baf0299705917 https://www.encodeproject.org/files/ENCFF342UPW/@@download/ENCFF342UPW.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/0ab0e872-98d1-4943-85ec-5c10eaeefe9a/ENCFF342UPW.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF832DVG bigBed bed3+ filtered peaks ENCSR498DQA ATAC-seq CL:0000556 megakaryocyte primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF342UPW, ENCFF790DJT 3134142 Ross Hardison, PennState b9dce6f4f1bc60e8ddb8b6107282a9df https://www.encodeproject.org/files/ENCFF832DVG/@@download/ENCFF832DVG.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/6fa0a7e2-4313-41cb-8fee-fe71cd0dfca4/ENCFF832DVG.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF282XJX fastq reads ENCSR498DQA ATAC-seq CL:0000556 megakaryocyte primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 48 single-ended 1214782806 Ross Hardison, PennState 1d10c7e6f5d6664547bd11672ee7039a https://www.encodeproject.org/files/ENCFF282XJX/@@download/ENCFF282XJX.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/27/682d13fa-3aaf-43e2-8827-c18b879a6a3d/ENCFF282XJX.fastq.gz inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF788XIC bam alignments ENCSR498DQA ATAC-seq CL:0000556 megakaryocyte primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF943WTV 1404099479 Anshul Kundaje, Stanford 8dee4cf555af4994e13eed0385bbf408 https://www.encodeproject.org/files/ENCFF788XIC/@@download/ENCFF788XIC.bam mm10 released s3://encode-public/2017/05/11/9fc3f4d5-067b-4007-9a3f-c013b4b32f6a/ENCFF788XIC.bam inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF883EHK bam alignments ENCSR498DQA ATAC-seq CL:0000556 megakaryocyte primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF282XJX, ENCFF788TPW 1513568859 Anshul Kundaje, Stanford cecbffe52fba5fc60ce18418fe20ce41 https://www.encodeproject.org/files/ENCFF883EHK/@@download/ENCFF883EHK.bam mm10 released s3://encode-public/2017/05/11/f56f2419-1eb1-4924-9692-30fb400055bc/ENCFF883EHK.bam inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF918PKQ bigWig signal p-value ENCSR498DQA ATAC-seq CL:0000556 megakaryocyte primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF788XIC 236272396 Anshul Kundaje, Stanford b42c8b5a2b96d2f594482bc9d0b360c7 https://www.encodeproject.org/files/ENCFF918PKQ/@@download/ENCFF918PKQ.bigWig mm10 released s3://encode-public/2017/05/11/153f99f6-0c86-4b3c-b6a3-4a3b7bada6f9/ENCFF918PKQ.bigWig inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF233SDY bigWig signal p-value ENCSR498DQA ATAC-seq CL:0000556 megakaryocyte primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF883EHK 251699944 Anshul Kundaje, Stanford 65a561f8c5d72caed9875974d9756b60 https://www.encodeproject.org/files/ENCFF233SDY/@@download/ENCFF233SDY.bigWig mm10 released s3://encode-public/2017/05/11/d4b7f168-9c03-4faa-ac92-76c1f8ec5040/ENCFF233SDY.bigWig inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF283GVL bigWig fold change over control ENCSR498DQA ATAC-seq CL:0000556 megakaryocyte primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF883EHK 355882206 Anshul Kundaje, Stanford 3d9883d800315b143a707038f92a6cbe https://www.encodeproject.org/files/ENCFF283GVL/@@download/ENCFF283GVL.bigWig mm10 released s3://encode-public/2017/05/11/e35b893b-f61e-4332-a476-89430e442be5/ENCFF283GVL.bigWig inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF047WUY bigWig fold change over control ENCSR498DQA ATAC-seq CL:0000556 megakaryocyte primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF788XIC 325007664 Anshul Kundaje, Stanford c2d5e9c68d3a8080c2780b7f835fe001 https://www.encodeproject.org/files/ENCFF047WUY/@@download/ENCFF047WUY.bigWig mm10 released s3://encode-public/2017/05/11/b0a0e919-c595-4b3e-8fca-9c154719f315/ENCFF047WUY.bigWig inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF907CZS fastq reads ENCSR597BGP ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF756RRU 2095891385 Bing Ren, UCSD 99af766d5b6ce257ad57f533c3b68028 https://www.encodeproject.org/files/ENCFF907CZS/@@download/ENCFF907CZS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/e42980bd-e6a9-47ad-ac8f-377edd783f4b/ENCFF907CZS.fastq.gz experiment not submitted to GEO ENCFF550FMX fastq reads ENCSR597BGP ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF601QOX 1773891220 Bing Ren, UCSD 784d1970fb129e882a15c5cff1ae7058 https://www.encodeproject.org/files/ENCFF550FMX/@@download/ENCFF550FMX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/5c1e897f-d1de-4cea-bef6-d7a820c97a12/ENCFF550FMX.fastq.gz experiment not submitted to GEO ENCFF756RRU fastq reads ENCSR597BGP ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF907CZS 1991371693 Bing Ren, UCSD 0c6e7a8708e842c64aa26f7c379c176b https://www.encodeproject.org/files/ENCFF756RRU/@@download/ENCFF756RRU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/ba77aedd-e406-41a1-b446-c206358b8b75/ENCFF756RRU.fastq.gz experiment not submitted to GEO ENCFF601QOX fastq reads ENCSR597BGP ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF550FMX 1879605784 Bing Ren, UCSD 6bb9854d66fda361328925b8faaa46d1 https://www.encodeproject.org/files/ENCFF601QOX/@@download/ENCFF601QOX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/50440995-335d-49cf-a233-8404595d01aa/ENCFF601QOX.fastq.gz experiment not submitted to GEO ENCFF201HYP bam alignments ENCSR597BGP ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF756RRU, ENCFF907CZS 3959466691 Anshul Kundaje, Stanford e18bf3ed3ccb8eac41351163c9e7ef3b https://www.encodeproject.org/files/ENCFF201HYP/@@download/ENCFF201HYP.bam mm10 released s3://encode-public/2017/04/25/76202726-8dee-4696-a0da-b34b5b8943ba/ENCFF201HYP.bam experiment not submitted to GEO ENCFF338CVG bam alignments ENCSR597BGP ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF550FMX, ENCFF601QOX 3285312297 Anshul Kundaje, Stanford 7571258227f3959898aed654bbaab111 https://www.encodeproject.org/files/ENCFF338CVG/@@download/ENCFF338CVG.bam mm10 released s3://encode-public/2017/04/25/14649e92-ef31-4bb6-95f3-445d5353ecf5/ENCFF338CVG.bam experiment not submitted to GEO ENCFF934HOM bigWig signal p-value ENCSR597BGP ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF201HYP 759078988 Anshul Kundaje, Stanford ff655e03bda1a1a0b794c4d74f6af456 https://www.encodeproject.org/files/ENCFF934HOM/@@download/ENCFF934HOM.bigWig mm10 released s3://encode-public/2017/04/25/0716f860-d6d3-4d8c-9679-f75652acc3af/ENCFF934HOM.bigWig experiment not submitted to GEO ENCFF699EIP bigWig signal p-value ENCSR597BGP ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF338CVG 498523105 Anshul Kundaje, Stanford b9fa43f7515f6d981d7af6f4489f5e89 https://www.encodeproject.org/files/ENCFF699EIP/@@download/ENCFF699EIP.bigWig mm10 released s3://encode-public/2017/04/25/95666004-887f-4865-90a8-083454a9f73f/ENCFF699EIP.bigWig experiment not submitted to GEO ENCFF238AZB bigWig fold change over control ENCSR597BGP ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF201HYP 1036922816 Anshul Kundaje, Stanford bd2cbdc19fa7a8a35216c4f0ba560e34 https://www.encodeproject.org/files/ENCFF238AZB/@@download/ENCFF238AZB.bigWig mm10 released s3://encode-public/2017/04/25/5bf812fa-9ead-4a3c-8c82-9feb4f73b771/ENCFF238AZB.bigWig experiment not submitted to GEO ENCFF158HGF bigWig fold change over control ENCSR597BGP ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF338CVG 781760889 Anshul Kundaje, Stanford 3a964395fb0270c3626b3ab4536b64c3 https://www.encodeproject.org/files/ENCFF158HGF/@@download/ENCFF158HGF.bigWig mm10 released s3://encode-public/2017/04/25/2b41ecda-3737-46fa-aef3-bb952c28e333/ENCFF158HGF.bigWig experiment not submitted to GEO ENCFF394BZR fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 1 ENCFF063UIQ 12673183 Michael Snyder, Stanford 582d1b79b402d9ad750ffa6deb36b219 https://www.encodeproject.org/files/ENCFF394BZR/@@download/ENCFF394BZR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/904adc82-7e45-4747-9098-1684a5ca15db/ENCFF394BZR.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF381EMR fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 2 ENCFF019HPP 1358490278 Michael Snyder, Stanford 9db0efff4180e3f0949de21443abe96d https://www.encodeproject.org/files/ENCFF381EMR/@@download/ENCFF381EMR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/b6cbd78a-5839-4509-9839-9cf7dbb544df/ENCFF381EMR.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF856TGQ fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 1 5 76 paired-ended 1 ENCFF623ZYT 663910369 Michael Snyder, Stanford 17e7a02065ae1ee88c6eece4e9b8de84 https://www.encodeproject.org/files/ENCFF856TGQ/@@download/ENCFF856TGQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/7057ba39-1399-4031-a0c0-fd2814c189a1/ENCFF856TGQ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF153PXR fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 1 ENCFF872UJJ 1053448566 Michael Snyder, Stanford 69220fc88dcb66b4464999effda1c71f https://www.encodeproject.org/files/ENCFF153PXR/@@download/ENCFF153PXR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/4a8b8190-10ff-4907-8016-785407f8c3de/ENCFF153PXR.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF273GYN fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 1 ENCFF719DEW 1560168445 Michael Snyder, Stanford 9d58dc5fd50de415e3bd01a0704f5b95 https://www.encodeproject.org/files/ENCFF273GYN/@@download/ENCFF273GYN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/8753efd6-4918-4a4b-8137-4a27403a6689/ENCFF273GYN.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF007UZW fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 1 ENCFF566UYO 714831509 Michael Snyder, Stanford d0f5fa9c1893cb35f8cc878b46eff42e https://www.encodeproject.org/files/ENCFF007UZW/@@download/ENCFF007UZW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d64dffd9-c471-463c-8bbd-61c9fef54482/ENCFF007UZW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF031AAH fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 2 ENCFF663TJB 36336981 Michael Snyder, Stanford 7eebcb078a64d2d1e993fc9bb24b1c4f https://www.encodeproject.org/files/ENCFF031AAH/@@download/ENCFF031AAH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/f72dd512-9a8f-46bc-883d-e5def90b8454/ENCFF031AAH.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF063UIQ fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 2 ENCFF394BZR 13499797 Michael Snyder, Stanford 39e37dda6d7efd6b4093b6f9a47c636f https://www.encodeproject.org/files/ENCFF063UIQ/@@download/ENCFF063UIQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/3af1c845-7f3b-46ab-bc32-b126fc315ffd/ENCFF063UIQ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF887UVJ fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 1 ENCFF823ZMA 36852676 Michael Snyder, Stanford 18a1d8b8dc63fe3de1e3a7a73517609d https://www.encodeproject.org/files/ENCFF887UVJ/@@download/ENCFF887UVJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/f6f92815-5019-4f76-bb55-538e978063ec/ENCFF887UVJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF719DEW fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 2 ENCFF273GYN 1710565502 Michael Snyder, Stanford 34295c7a454cd4661a7f7dd695def9c1 https://www.encodeproject.org/files/ENCFF719DEW/@@download/ENCFF719DEW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/960ab87a-d61e-49d1-b318-e37717f98f66/ENCFF719DEW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF954GDA fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 1 ENCFF483DEQ 1572807371 Michael Snyder, Stanford 10611fa01d19e7c5297ac04dc04967fc https://www.encodeproject.org/files/ENCFF954GDA/@@download/ENCFF954GDA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/c1bae5c4-b1bf-4a3b-b1b0-43ddbcf470c6/ENCFF954GDA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF566UYO fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 2 ENCFF007UZW 781514489 Michael Snyder, Stanford 9d3db225e1fb1d6f0ede03b411d2bb0a https://www.encodeproject.org/files/ENCFF566UYO/@@download/ENCFF566UYO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d10068b4-0d0e-4b5d-b51e-a549f52b7747/ENCFF566UYO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF823ZMA fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 2 ENCFF887UVJ 36534852 Michael Snyder, Stanford 3ea6cc0bcfb1b9f912c4584a40c0e4bb https://www.encodeproject.org/files/ENCFF823ZMA/@@download/ENCFF823ZMA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/c98d5a72-4e7c-413e-8ee0-58c263fabcda/ENCFF823ZMA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF019HPP fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 1 ENCFF381EMR 1328794610 Michael Snyder, Stanford 3b7880c596f74c26f8182b6557b87188 https://www.encodeproject.org/files/ENCFF019HPP/@@download/ENCFF019HPP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/1f47a2b2-9daf-46f0-8344-9612fc0cd5b9/ENCFF019HPP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF483DEQ fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 2 ENCFF954GDA 1669143845 Michael Snyder, Stanford 030054ca072116de8de851fff80cb4c3 https://www.encodeproject.org/files/ENCFF483DEQ/@@download/ENCFF483DEQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/0fc27515-fd51-4b0d-a690-6a87b4fa86ee/ENCFF483DEQ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF663TJB fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 1 ENCFF031AAH 33778019 Michael Snyder, Stanford 2384943c4f9a831ea5fc6d2b465c7aa8 https://www.encodeproject.org/files/ENCFF663TJB/@@download/ENCFF663TJB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/730bbb2f-ea39-43ac-ac4e-12bd7033c362/ENCFF663TJB.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF623ZYT fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 1 5 76 paired-ended 2 ENCFF856TGQ 675100641 Michael Snyder, Stanford 5e4ffdaf270c6f64856af15ef4f1f6fe https://www.encodeproject.org/files/ENCFF623ZYT/@@download/ENCFF623ZYT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/19b3061c-0820-4192-ada0-72ad5fdf0ded/ENCFF623ZYT.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF872UJJ fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 2 ENCFF153PXR 1134513826 Michael Snyder, Stanford f8071364cf67467443e313bbab3cd6d9 https://www.encodeproject.org/files/ENCFF872UJJ/@@download/ENCFF872UJJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/4a79db1a-118f-452e-82dc-cb842f7536fe/ENCFF872UJJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF980ABV fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 1 ENCFF862WXI 1409088484 Michael Snyder, Stanford 83d00ac8ba67ebd66a734529913c2c25 https://www.encodeproject.org/files/ENCFF980ABV/@@download/ENCFF980ABV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/84a44af2-cdac-4bfe-990b-6fb0b994a8a2/ENCFF980ABV.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF862WXI fastq reads ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 2 ENCFF980ABV 1471296102 Michael Snyder, Stanford e807a005251b6ade83730c65596ce42d https://www.encodeproject.org/files/ENCFF862WXI/@@download/ENCFF862WXI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/83d31008-c166-4ca2-8b57-46a3ef9fbd59/ENCFF862WXI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF374VWZ bam alignments ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 2 ENCFF007UZW, ENCFF153PXR, ENCFF273GYN, ENCFF483DEQ, ENCFF566UYO, ENCFF719DEW, ENCFF862WXI, ENCFF872UJJ, ENCFF954GDA, ENCFF980ABV 5339713402 Anshul Kundaje, Stanford 9e04bcda06ca4ad1e32b4f6f21f72b19 https://www.encodeproject.org/files/ENCFF374VWZ/@@download/ENCFF374VWZ.bam GRCh38 released s3://encode-public/2017/04/01/279c81cb-1a7e-447d-a266-753546818b65/ENCFF374VWZ.bam mismatched file status, experiment not submitted to GEO ENCFF588PIS bam alignments ENCSR798IJQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day DNA False 2017-10-10 GGR 1 ENCFF019HPP, ENCFF031AAH, ENCFF063UIQ, ENCFF381EMR, ENCFF394BZR, ENCFF623ZYT, ENCFF663TJB, ENCFF823ZMA, ENCFF856TGQ, ENCFF887UVJ 1645707250 Anshul Kundaje, Stanford f310dcda5400928744b1ca967c9e4ea6 https://www.encodeproject.org/files/ENCFF588PIS/@@download/ENCFF588PIS.bam GRCh38 released s3://encode-public/2017/04/01/2311510f-56b2-49a8-89e3-75b1db31a884/ENCFF588PIS.bam mismatched file status, experiment not submitted to GEO ENCFF817FUN fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 1 ENCFF096HHA 1620730348 Michael Snyder, Stanford 376add8b1b444518526318170f93e099 https://www.encodeproject.org/files/ENCFF817FUN/@@download/ENCFF817FUN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/0adbc7aa-cfe1-4fe9-9475-330bc09149a8/ENCFF817FUN.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF544HIO fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 1 ENCFF467YGO 3253282294 Michael Snyder, Stanford 108999d9965c58c36b9d208c4b41d28a https://www.encodeproject.org/files/ENCFF544HIO/@@download/ENCFF544HIO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/26685cac-04fe-437b-b099-8c25457f8022/ENCFF544HIO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF344XKP fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 1 ENCFF609REL 1474748909 Michael Snyder, Stanford ade6c93909ced66176826391e8595188 https://www.encodeproject.org/files/ENCFF344XKP/@@download/ENCFF344XKP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/31858a60-14a0-48e8-9831-1f36db17171f/ENCFF344XKP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF915KAJ fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 1 ENCFF820AOE 1363094933 Michael Snyder, Stanford 24f2e31ecf225331f74e76c5749c3c73 https://www.encodeproject.org/files/ENCFF915KAJ/@@download/ENCFF915KAJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/f74e036c-ebea-493f-abc6-6e5a9d4254df/ENCFF915KAJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF096HHA fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 2 ENCFF817FUN 1749865302 Michael Snyder, Stanford 6ec95a19676c0ff04e2786326c138962 https://www.encodeproject.org/files/ENCFF096HHA/@@download/ENCFF096HHA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d37350c6-da77-461f-b420-9c7addaaa486/ENCFF096HHA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF820AOE fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 2 ENCFF915KAJ 1468116683 Michael Snyder, Stanford 73978bf5981c119f3e56f4eccd0a0e8c https://www.encodeproject.org/files/ENCFF820AOE/@@download/ENCFF820AOE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/ecc4040e-d21d-4f86-8aea-3e561ef608bf/ENCFF820AOE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF490LLO fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 1 ENCFF641ZKC 3732761435 Michael Snyder, Stanford a4b78f589564f89e9335bf7bc3048021 https://www.encodeproject.org/files/ENCFF490LLO/@@download/ENCFF490LLO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/b3e8e8c7-7a6e-4a03-afef-ecbddda65f96/ENCFF490LLO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF641ZKC fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 2 ENCFF490LLO 3808197474 Michael Snyder, Stanford 684f71b0819bd383390009f5b91c41a0 https://www.encodeproject.org/files/ENCFF641ZKC/@@download/ENCFF641ZKC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/6b56d07f-224b-470f-87ec-458bfb5b1489/ENCFF641ZKC.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF467YGO fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 2 ENCFF544HIO 3334875412 Michael Snyder, Stanford 45037adb6a55e6267ee696a288d641d1 https://www.encodeproject.org/files/ENCFF467YGO/@@download/ENCFF467YGO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/c2aaa5d9-a0d2-4414-b72f-d5f913f0d9ea/ENCFF467YGO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF609REL fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 2 ENCFF344XKP 1582679029 Michael Snyder, Stanford f182375bf30303f255819b96978086cf https://www.encodeproject.org/files/ENCFF609REL/@@download/ENCFF609REL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/7748db69-1396-4f55-a069-dc2a06f31293/ENCFF609REL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF892QUG fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 1 ENCFF925JTW 1220234884 Michael Snyder, Stanford a21da02a2eda89cb348a01c3f483141b https://www.encodeproject.org/files/ENCFF892QUG/@@download/ENCFF892QUG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/27ae6ec9-cdad-47e2-9a3c-512cde9548af/ENCFF892QUG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF925JTW fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 2 ENCFF892QUG 1335545699 Michael Snyder, Stanford 89d0bae6627ce3b09fe9eabc3a03e97b https://www.encodeproject.org/files/ENCFF925JTW/@@download/ENCFF925JTW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/0880e575-52a1-4591-83ab-1a91859f43fd/ENCFF925JTW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF856LWQ fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 1 ENCFF197ZVR 2714475769 Michael Snyder, Stanford 0268904b377d5a1a611c81a9c1d1aca4 https://www.encodeproject.org/files/ENCFF856LWQ/@@download/ENCFF856LWQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/21c92a4d-51d7-4875-8063-9665dbc1c1ce/ENCFF856LWQ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF197ZVR fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 2 ENCFF856LWQ 2723648173 Michael Snyder, Stanford 0edaafd45d5990e5fca6a4615a608069 https://www.encodeproject.org/files/ENCFF197ZVR/@@download/ENCFF197ZVR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/00b19646-2c0c-4727-a2af-0daeee4d2ee7/ENCFF197ZVR.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF186TEU fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 1 ENCFF945PUG 1096878082 Michael Snyder, Stanford 4c626a364d02e0b4f16f4dbabbe449a8 https://www.encodeproject.org/files/ENCFF186TEU/@@download/ENCFF186TEU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/434cde37-3b6f-49fb-a95e-804ab140d63c/ENCFF186TEU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF183ZSA fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 2 ENCFF441EAM 1590606612 Michael Snyder, Stanford 5fefec137a9139533b1a2ff2a9d1e2e4 https://www.encodeproject.org/files/ENCFF183ZSA/@@download/ENCFF183ZSA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/a5d77a16-5110-4080-b6a8-4d1ec2e85345/ENCFF183ZSA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF441EAM fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 1 ENCFF183ZSA 1527492597 Michael Snyder, Stanford e92831cf8f829cfcbeca5968243b63fe https://www.encodeproject.org/files/ENCFF441EAM/@@download/ENCFF441EAM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/de5abed2-4680-43f2-b5e5-7fa11fd9825b/ENCFF441EAM.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF945PUG fastq reads ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 2 ENCFF186TEU 1133730437 Michael Snyder, Stanford 3948c37431a2ddab8233277ba2b67dd3 https://www.encodeproject.org/files/ENCFF945PUG/@@download/ENCFF945PUG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/6ea2c5b4-cfc6-4f45-887a-0f8a349fe273/ENCFF945PUG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF832AIE bam alignments ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 1 ENCFF344XKP, ENCFF467YGO, ENCFF490LLO, ENCFF544HIO, ENCFF609REL, ENCFF641ZKC, ENCFF820AOE, ENCFF915KAJ 6627096724 Anshul Kundaje, Stanford 5ddce1c64e724a11f85a3b4b589e10da https://www.encodeproject.org/files/ENCFF832AIE/@@download/ENCFF832AIE.bam GRCh38 released s3://encode-public/2017/04/01/b89bf178-d96b-4999-9a5a-6c57117d8247/ENCFF832AIE.bam mismatched file status, experiment not submitted to GEO ENCFF217OUE bam alignments ENCSR521RAL ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3.5 day DNA False 2017-10-10 GGR 2 ENCFF096HHA, ENCFF183ZSA, ENCFF186TEU, ENCFF197ZVR, ENCFF441EAM, ENCFF817FUN, ENCFF856LWQ, ENCFF892QUG, ENCFF925JTW, ENCFF945PUG 6472064063 Anshul Kundaje, Stanford f27bc4e37ac52d2a7107640b2631a046 https://www.encodeproject.org/files/ENCFF217OUE/@@download/ENCFF217OUE.bam GRCh38 released s3://encode-public/2017/04/01/31776472-bc68-4b1b-a884-91b303bf70d2/ENCFF217OUE.bam mismatched file status, experiment not submitted to GEO ENCFF579GJX fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 2 ENCFF564AVB 3640437501 Michael Snyder, Stanford 6b62441561210925f78186de3006033c https://www.encodeproject.org/files/ENCFF579GJX/@@download/ENCFF579GJX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/ed50579f-3d8a-4ab7-b2d4-796f954f6f30/ENCFF579GJX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF558QRD fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 1 ENCFF319VSI 1607788349 Michael Snyder, Stanford 63cff2131b588a8d51caa9ac0f9dd693 https://www.encodeproject.org/files/ENCFF558QRD/@@download/ENCFF558QRD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/8dd4be43-795b-41df-9446-e9c677a78aee/ENCFF558QRD.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF319VSI fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 2 ENCFF558QRD 1754763685 Michael Snyder, Stanford e7da5c4fc567b881432c519980a38ec6 https://www.encodeproject.org/files/ENCFF319VSI/@@download/ENCFF319VSI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/fb6d8efa-82f4-41e6-955b-3251e4ed5f07/ENCFF319VSI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF564AVB fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 1 ENCFF579GJX 3526378959 Michael Snyder, Stanford 344fa59d400baf37f8bb9bd855e9583a https://www.encodeproject.org/files/ENCFF564AVB/@@download/ENCFF564AVB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/a0ddff15-60f0-48f1-a886-0223fec27f64/ENCFF564AVB.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF648VMU fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 2 ENCFF030KZE 1890197072 Michael Snyder, Stanford f5ed76a5cffb64c36aaf2214fe8dfc09 https://www.encodeproject.org/files/ENCFF648VMU/@@download/ENCFF648VMU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/ec2f9661-e426-46ca-848a-363f63061b4e/ENCFF648VMU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF704FBF fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 2 ENCFF178HJF 573240775 Michael Snyder, Stanford e3e6bbab597327505176e330537a257a https://www.encodeproject.org/files/ENCFF704FBF/@@download/ENCFF704FBF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d1c6a2a2-074e-4ece-b4f2-8e9531102252/ENCFF704FBF.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF172BNO fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 1 ENCFF392VEN 653127954 Michael Snyder, Stanford 9c597e4b1203c35e677b69540a8724af https://www.encodeproject.org/files/ENCFF172BNO/@@download/ENCFF172BNO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/e6fb2002-07c4-4e6e-ab75-b2a7190c10dc/ENCFF172BNO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF117YFJ fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 1 ENCFF195TTM 2270807750 Michael Snyder, Stanford cad3b5e135c9400cb63e8b3ab68c3683 https://www.encodeproject.org/files/ENCFF117YFJ/@@download/ENCFF117YFJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/12e0ec9c-4ea9-47bc-adfd-2aadd2b8bef8/ENCFF117YFJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF492GPM fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 2 6 76 paired-ended 2 ENCFF721XIL 1251346129 Michael Snyder, Stanford 11e45d0a14794b3b49644109915eae8d https://www.encodeproject.org/files/ENCFF492GPM/@@download/ENCFF492GPM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/584ce2e8-7cd3-492d-9a2c-f4b9f6f49ba1/ENCFF492GPM.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF718JWA fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 1 ENCFF451NRS 1840029103 Michael Snyder, Stanford 879666c6e9e3604073a2158604602cb7 https://www.encodeproject.org/files/ENCFF718JWA/@@download/ENCFF718JWA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/813b5f44-0cd4-46f2-a33d-f51370bebfd5/ENCFF718JWA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF030KZE fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 1 ENCFF648VMU 1716507626 Michael Snyder, Stanford 6ff3b8f6bbb8f8da7962ed5745584004 https://www.encodeproject.org/files/ENCFF030KZE/@@download/ENCFF030KZE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/9b40251f-d1f5-44e9-b24c-6db454c6f76c/ENCFF030KZE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF392VEN fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 2 ENCFF172BNO 685448653 Michael Snyder, Stanford 1d484ae6f0550d7133e001a62b89046e https://www.encodeproject.org/files/ENCFF392VEN/@@download/ENCFF392VEN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/6e8d9a03-d3c0-4764-9362-bfd5b65d8589/ENCFF392VEN.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF451NRS fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 2 ENCFF718JWA 1999774520 Michael Snyder, Stanford 79af3dfd8f1f593301350abb8633cce7 https://www.encodeproject.org/files/ENCFF451NRS/@@download/ENCFF451NRS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/17ac3dcf-420d-45e1-b9df-0c2d2e2f9686/ENCFF451NRS.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF195TTM fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 2 ENCFF117YFJ 2385533010 Michael Snyder, Stanford 86efe6a3e20a26c1f428c5830a9acf7c https://www.encodeproject.org/files/ENCFF195TTM/@@download/ENCFF195TTM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/1fbeecea-9f2f-4c05-bb11-0084dfc9cc59/ENCFF195TTM.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF174LCD fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 1 ENCFF600QDG 1600886013 Michael Snyder, Stanford 41c5a5de5779b3c0621104c7dba5c6b9 https://www.encodeproject.org/files/ENCFF174LCD/@@download/ENCFF174LCD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/773ea73d-fd36-4573-b7c2-6c8041919622/ENCFF174LCD.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF600QDG fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 2 ENCFF174LCD 1691725639 Michael Snyder, Stanford 058e95368efe0c788631c37db60f04e0 https://www.encodeproject.org/files/ENCFF600QDG/@@download/ENCFF600QDG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/224de134-85e7-4a96-a7e2-abe20c79d12e/ENCFF600QDG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF721XIL fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 2 6 76 paired-ended 1 ENCFF492GPM 1195768447 Michael Snyder, Stanford 5429e1d88bc0ba49068e40bcae5d416e https://www.encodeproject.org/files/ENCFF721XIL/@@download/ENCFF721XIL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/75746858-8938-4ada-8034-5b1bbe4c4cec/ENCFF721XIL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF178HJF fastq reads ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 1 ENCFF704FBF 541805852 Michael Snyder, Stanford aca225f80ecda109b48cd5e91fb3c936 https://www.encodeproject.org/files/ENCFF178HJF/@@download/ENCFF178HJF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/94df619e-d73c-4a8c-839b-b9e61f4b803e/ENCFF178HJF.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF885IPV bam alignments ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 1 ENCFF117YFJ, ENCFF195TTM, ENCFF451NRS, ENCFF564AVB, ENCFF579GJX, ENCFF718JWA 7632903622 Anshul Kundaje, Stanford bb922951c4f7f9b83e3f8ce6d6b8a3c5 https://www.encodeproject.org/files/ENCFF885IPV/@@download/ENCFF885IPV.bam GRCh38 released s3://encode-public/2017/04/01/b5dcf572-1e92-4444-a2ac-ae7c989ac723/ENCFF885IPV.bam mismatched file status, experiment not submitted to GEO ENCFF678AIF bam alignments ENCSR572UDP ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 1.5 day DNA False 2017-10-10 GGR 2 ENCFF030KZE, ENCFF172BNO, ENCFF174LCD, ENCFF178HJF, ENCFF319VSI, ENCFF392VEN, ENCFF492GPM, ENCFF558QRD, ENCFF600QDG, ENCFF648VMU, ENCFF704FBF, ENCFF721XIL 7391514402 Anshul Kundaje, Stanford 6255a6805402c19140b7c7e2e056fc45 https://www.encodeproject.org/files/ENCFF678AIF/@@download/ENCFF678AIF.bam GRCh38 released s3://encode-public/2017/04/01/fbea0dbd-1643-4aa6-a893-a21cf6dbcb94/ENCFF678AIF.bam mismatched file status, experiment not submitted to GEO ENCFF119TXW fastq reads ENCSR559FAJ ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF413XTH 1747484951 Bing Ren, UCSD a9696c33f595f3c14a85b53ab578065d https://www.encodeproject.org/files/ENCFF119TXW/@@download/ENCFF119TXW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/073303e4-6503-4aae-884a-cd566eb294b4/ENCFF119TXW.fastq.gz experiment not submitted to GEO ENCFF171APM fastq reads ENCSR559FAJ ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF199UBT 1809427234 Bing Ren, UCSD c4749a88c0fb2fec0f68fb48a4172091 https://www.encodeproject.org/files/ENCFF171APM/@@download/ENCFF171APM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/a4c7210f-6cb0-4e77-8e8f-aad0c8a73127/ENCFF171APM.fastq.gz experiment not submitted to GEO ENCFF413XTH fastq reads ENCSR559FAJ ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF119TXW 1594825555 Bing Ren, UCSD c9f4183fb538a1209c45c08893322e6e https://www.encodeproject.org/files/ENCFF413XTH/@@download/ENCFF413XTH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/9efd1c15-320b-4a6e-b91d-793f11feced7/ENCFF413XTH.fastq.gz experiment not submitted to GEO ENCFF199UBT fastq reads ENCSR559FAJ ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF171APM 1661412334 Bing Ren, UCSD 9d2feb256ccf42c056f9910e02774aac https://www.encodeproject.org/files/ENCFF199UBT/@@download/ENCFF199UBT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/f05feb69-8c66-4b8f-88e7-68d77680963f/ENCFF199UBT.fastq.gz experiment not submitted to GEO ENCFF002LRT bam alignments ENCSR559FAJ ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF119TXW, ENCFF413XTH 3486259693 Anshul Kundaje, Stanford d2ed214b438a868ba8d7c790cf86050c https://www.encodeproject.org/files/ENCFF002LRT/@@download/ENCFF002LRT.bam mm10 released s3://encode-public/2017/04/25/30625823-388f-4040-b3e8-387c9b4a561c/ENCFF002LRT.bam experiment not submitted to GEO ENCFF576SKK bam alignments ENCSR559FAJ ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF171APM, ENCFF199UBT 3517746889 Anshul Kundaje, Stanford 5e04d0e12a7e2590be8ac9661504aa41 https://www.encodeproject.org/files/ENCFF576SKK/@@download/ENCFF576SKK.bam mm10 released s3://encode-public/2017/04/25/97c3ae1f-cac2-4419-b0f8-9ddfd27abd88/ENCFF576SKK.bam experiment not submitted to GEO ENCFF411MUA bigWig signal p-value ENCSR559FAJ ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF002LRT 780030631 Anshul Kundaje, Stanford 18d50d36e9699c0aff3877ca1fd68b93 https://www.encodeproject.org/files/ENCFF411MUA/@@download/ENCFF411MUA.bigWig mm10 released s3://encode-public/2017/04/25/ceab72c0-90e1-438c-9221-3553ded8f2e1/ENCFF411MUA.bigWig experiment not submitted to GEO ENCFF043VKO bigWig signal p-value ENCSR559FAJ ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF576SKK 518799409 Anshul Kundaje, Stanford 8516f494c50b010d2d491fccaf709b3c https://www.encodeproject.org/files/ENCFF043VKO/@@download/ENCFF043VKO.bigWig mm10 released s3://encode-public/2017/04/25/38bacf5b-2b69-47f1-aad4-ba2fc54e85d9/ENCFF043VKO.bigWig experiment not submitted to GEO ENCFF917SGA bigWig fold change over control ENCSR559FAJ ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF002LRT 767671587 Anshul Kundaje, Stanford ddeb76f2cee44a8bd38aca98b5f9e35f https://www.encodeproject.org/files/ENCFF917SGA/@@download/ENCFF917SGA.bigWig mm10 released s3://encode-public/2017/04/26/918dc7f4-c5e9-466f-b426-fa8b3f47c8a2/ENCFF917SGA.bigWig experiment not submitted to GEO ENCFF924BNE bigWig fold change over control ENCSR559FAJ ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF576SKK 767320532 Anshul Kundaje, Stanford 2aaa0e32927499865e843ac9e7cc1f84 https://www.encodeproject.org/files/ENCFF924BNE/@@download/ENCFF924BNE.bigWig mm10 released s3://encode-public/2017/04/26/b7220f53-0ae2-4b7d-801f-2ebadfd9e5ec/ENCFF924BNE.bigWig experiment not submitted to GEO ENCFF323WYT fastq reads ENCSR096BPX ATAC-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 1 ENCFF047HCR 2043877925 Michael Snyder, Stanford 04256f4cbf384f50991df96e4d1ae232 https://www.encodeproject.org/files/ENCFF323WYT/@@download/ENCFF323WYT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/28/749051d4-34b7-4e4b-bfc7-d2a0cedbbb12/ENCFF323WYT.fastq.gz experiment not submitted to GEO ENCFF047HCR fastq reads ENCSR096BPX ATAC-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 2 ENCFF323WYT 2253187600 Michael Snyder, Stanford 8b3b8297c5153178ceb3bc4f9511a8a9 https://www.encodeproject.org/files/ENCFF047HCR/@@download/ENCFF047HCR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/28/d7d42076-d0d3-44d1-ae68-792327f7525c/ENCFF047HCR.fastq.gz experiment not submitted to GEO ENCFF846JID bam alignments ENCSR096BPX ATAC-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF047HCR, ENCFF323WYT 3048190988 Anshul Kundaje, Stanford f7ffb5b9f6f09a5c529852cd53819d64 https://www.encodeproject.org/files/ENCFF846JID/@@download/ENCFF846JID.bam GRCh38 released s3://encode-public/2017/02/08/8b6adcd5-8aa9-4b7c-9f55-ad4131fc880c/ENCFF846JID.bam experiment not submitted to GEO ENCFF045BFM bigWig fold change over control ENCSR096BPX ATAC-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF846JID 680938607 Anshul Kundaje, Stanford 7471fb755a47078035d834d2af4d4ca3 https://www.encodeproject.org/files/ENCFF045BFM/@@download/ENCFF045BFM.bigWig GRCh38 released s3://encode-public/2017/02/08/f252984d-02f1-4e81-b805-34bd12b226c9/ENCFF045BFM.bigWig experiment not submitted to GEO ENCFF581YXT bigWig signal p-value ENCSR096BPX ATAC-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF846JID 540064313 Anshul Kundaje, Stanford e6d04bb7e3f1cba5bdcf8800d8694776 https://www.encodeproject.org/files/ENCFF581YXT/@@download/ENCFF581YXT.bigWig GRCh38 released s3://encode-public/2017/02/08/9772d77d-93ca-4262-bb9e-d84b44284ea2/ENCFF581YXT.bigWig experiment not submitted to GEO ENCFF903OWG fastq reads ENCSR780HBP ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 6 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 2 1 42 paired-ended 1 ENCFF011QJZ 2501457909 Manuel Garber, UMass cc5fd9b6be241e8d8eb037dc2359adf6 SRA:SRR5210442 https://www.encodeproject.org/files/ENCFF903OWG/@@download/ENCFF903OWG.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/254ebe4b-8073-464b-af9a-8bf3875d0d1e/ENCFF903OWG.fastq.gz ENCFF888MFK fastq reads ENCSR780HBP ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 6 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 1 ENCFF317LYL 1620257583 Manuel Garber, UMass 495fc6922bf03ff47132069a15e0a40a SRA:SRR5210443 https://www.encodeproject.org/files/ENCFF888MFK/@@download/ENCFF888MFK.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/7c4b0c39-a288-4bbc-8227-ab623a563206/ENCFF888MFK.fastq.gz ENCFF317LYL fastq reads ENCSR780HBP ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 6 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 2 ENCFF888MFK 1660836887 Manuel Garber, UMass fbb1cdfd5086bf3cbbaa7331ea676e65 SRA:SRR5210443 https://www.encodeproject.org/files/ENCFF317LYL/@@download/ENCFF317LYL.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/b42a35fb-ca9c-4393-9ef5-9c94962722c5/ENCFF317LYL.fastq.gz ENCFF011QJZ fastq reads ENCSR780HBP ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 6 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 2 1 42 paired-ended 2 ENCFF903OWG 2602911362 Manuel Garber, UMass 04416ec406f0be2f9bb8c849b00fc7f5 SRA:SRR5210442 https://www.encodeproject.org/files/ENCFF011QJZ/@@download/ENCFF011QJZ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/536d3d20-7cbb-4405-b55b-c8b606a54159/ENCFF011QJZ.fastq.gz ENCFF440YYI fastq reads ENCSR280ZDP ATAC-seq EFO:0002034 G1E cell line Mus musculus DNA False 2016-03-30 ENCODE 1 1 50 single-ended 1778691625 Ross Hardison, PennState 76da9e075605228474869df25a303186 https://www.encodeproject.org/files/ENCFF440YYI/@@download/ENCFF440YYI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/09/35dd46f9-76e6-4f73-9416-6f3bf004caa9/ENCFF440YYI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF698NQU fastq reads ENCSR280ZDP ATAC-seq EFO:0002034 G1E cell line Mus musculus DNA False 2016-03-30 ENCODE 2 1 50 single-ended 2152261284 Ross Hardison, PennState aefe023e410013d072b561c18bf19fa9 https://www.encodeproject.org/files/ENCFF698NQU/@@download/ENCFF698NQU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/09/6c650bd2-1eef-415c-bb24-65ac140d7f77/ENCFF698NQU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF471PVN bam alignments ENCSR280ZDP ATAC-seq EFO:0002034 G1E cell line Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF698NQU 1474794391 Ross Hardison, PennState 64e41a8c8e1171655cab016250a7af77 https://www.encodeproject.org/files/ENCFF471PVN/@@download/ENCFF471PVN.bam mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/b3f65fe3-f716-41ea-97d3-266d74c00c13/ENCFF471PVN.bam mismatched file status, experiment not submitted to GEO ENCFF625HVL bigBed bed3+ peaks ENCSR280ZDP ATAC-seq EFO:0002034 G1E cell line Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF606PRC 882642 Ross Hardison, PennState eac96a32a91956942da53748a5a23e22 https://www.encodeproject.org/files/ENCFF625HVL/@@download/ENCFF625HVL.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/776eb7be-53f5-4650-909b-0b3c479a05ac/ENCFF625HVL.bigBed mismatched file status, experiment not submitted to GEO ENCFF606PRC bam alignments ENCSR280ZDP ATAC-seq EFO:0002034 G1E cell line Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF440YYI 1242290660 Ross Hardison, PennState 75122c04d23b62facb4d247294f9796d https://www.encodeproject.org/files/ENCFF606PRC/@@download/ENCFF606PRC.bam mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/0c976deb-617b-4479-8943-e3d5290b585c/ENCFF606PRC.bam mismatched file status, experiment not submitted to GEO ENCFF682RJH bigBed narrowPeak filtered regions ENCSR280ZDP ATAC-seq EFO:0002034 G1E cell line Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF381TYY, ENCFF790DJT 2785061 Ross Hardison, PennState 6c13bfe71ec1913d105b16828c4bd0db https://www.encodeproject.org/files/ENCFF682RJH/@@download/ENCFF682RJH.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/26934742-c7e0-4ee3-aaff-bf7963c7489d/ENCFF682RJH.bigBed mismatched file status, experiment not submitted to GEO ENCFF487VYU bigBed narrowPeak open chromatin regions ENCSR280ZDP ATAC-seq EFO:0002034 G1E cell line Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF606PRC 6558434 Ross Hardison, PennState e0d44fcc9bd8e4ebcf0e460d1f43557d https://www.encodeproject.org/files/ENCFF487VYU/@@download/ENCFF487VYU.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/ac8bfbc1-bd7b-463d-9c79-d0ff8ef48bd6/ENCFF487VYU.bigBed mismatched file status, experiment not submitted to GEO ENCFF246JMK bigBed bed3+ filtered peaks ENCSR280ZDP ATAC-seq EFO:0002034 G1E cell line Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF625HVL, ENCFF790DJT 848335 Ross Hardison, PennState 574b190b780e78effe0b5c1a8023b271 https://www.encodeproject.org/files/ENCFF246JMK/@@download/ENCFF246JMK.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/99c3cf05-6d95-43fe-b9f8-4e295f1b4cd8/ENCFF246JMK.bigBed mismatched file status, experiment not submitted to GEO ENCFF957MWW bigWig signal of all reads ENCSR280ZDP ATAC-seq EFO:0002034 G1E cell line Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF471PVN 3246041558 Ross Hardison, PennState 386aa9be994b67b5be1c78b8850eee84 https://www.encodeproject.org/files/ENCFF957MWW/@@download/ENCFF957MWW.bigWig mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/c1a662ee-74af-4383-b5e3-11f5262187c7/ENCFF957MWW.bigWig mismatched file status, experiment not submitted to GEO ENCFF651SCQ bigBed bed3+ peaks ENCSR280ZDP ATAC-seq EFO:0002034 G1E cell line Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF471PVN 959723 Ross Hardison, PennState 739f457ee622ce21f412b87bbbdd9fa7 https://www.encodeproject.org/files/ENCFF651SCQ/@@download/ENCFF651SCQ.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/77d8a55d-944d-49f6-8001-64e2b2218f17/ENCFF651SCQ.bigBed mismatched file status, experiment not submitted to GEO ENCFF381TYY bigBed narrowPeak open chromatin regions ENCSR280ZDP ATAC-seq EFO:0002034 G1E cell line Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF471PVN 4953214 Ross Hardison, PennState 3f80f5138e7f4efdcc524595d2f64a6b https://www.encodeproject.org/files/ENCFF381TYY/@@download/ENCFF381TYY.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/fb5cad45-89d6-4f37-843a-a3b162596e38/ENCFF381TYY.bigBed mismatched file status, experiment not submitted to GEO ENCFF664HAH bigWig signal of all reads ENCSR280ZDP ATAC-seq EFO:0002034 G1E cell line Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF606PRC 3483441204 Ross Hardison, PennState 2d47b6cdfdde27dfd730da70cfdff362 https://www.encodeproject.org/files/ENCFF664HAH/@@download/ENCFF664HAH.bigWig mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/3c89fbf8-d81f-4e01-bb4f-ee71f6088356/ENCFF664HAH.bigWig mismatched file status, experiment not submitted to GEO ENCFF738KWI bigBed narrowPeak filtered regions ENCSR280ZDP ATAC-seq EFO:0002034 G1E cell line Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF487VYU, ENCFF790DJT 2795750 Ross Hardison, PennState 46a10e80c1be67b7359642ca0c3d7d65 https://www.encodeproject.org/files/ENCFF738KWI/@@download/ENCFF738KWI.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/1f95a40a-8c4e-4ee0-ada9-0294d2db4ec9/ENCFF738KWI.bigBed mismatched file status, experiment not submitted to GEO ENCFF616ILJ bigBed bed3+ filtered peaks ENCSR280ZDP ATAC-seq EFO:0002034 G1E cell line Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF651SCQ, ENCFF790DJT 923913 Ross Hardison, PennState 4ca05d3ca5020967a6ed0b1c716cc623 https://www.encodeproject.org/files/ENCFF616ILJ/@@download/ENCFF616ILJ.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/53952971-f0df-496d-a4a8-b5c7a63291dd/ENCFF616ILJ.bigBed mismatched file status, experiment not submitted to GEO ENCFF731NRD bigWig fold change over control ENCSR280ZDP ATAC-seq EFO:0002034 G1E cell line Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF540ZEZ 93856736 Anshul Kundaje, Stanford 7fc80a0845b6b5daad62186cbb68362e https://www.encodeproject.org/files/ENCFF731NRD/@@download/ENCFF731NRD.bigWig mm10 released s3://encode-public/2017/05/11/40371d99-b8b1-4e6c-9871-b8a61b5c7f8d/ENCFF731NRD.bigWig mismatched file status, experiment not submitted to GEO ENCFF752EUG bigWig signal p-value ENCSR280ZDP ATAC-seq EFO:0002034 G1E cell line Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF540ZEZ 98132296 Anshul Kundaje, Stanford 06583c0a8dd114c5e8da2c1c41b7a088 https://www.encodeproject.org/files/ENCFF752EUG/@@download/ENCFF752EUG.bigWig mm10 released s3://encode-public/2017/05/11/f1520453-54b8-402f-bca8-2a69828d6214/ENCFF752EUG.bigWig mismatched file status, experiment not submitted to GEO ENCFF540ZEZ bam alignments ENCSR280ZDP ATAC-seq EFO:0002034 G1E cell line Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF440YYI 362293334 Anshul Kundaje, Stanford ba29f4c9bab3e622b62c57a252a38f79 https://www.encodeproject.org/files/ENCFF540ZEZ/@@download/ENCFF540ZEZ.bam mm10 released s3://encode-public/2017/05/11/0a59448f-42fd-4c1f-8cbd-fa878d5dd0d8/ENCFF540ZEZ.bam mismatched file status, experiment not submitted to GEO ENCFF762LUG bam alignments ENCSR280ZDP ATAC-seq EFO:0002034 G1E cell line Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF698NQU 355869474 Anshul Kundaje, Stanford 328c354ed78fa9ffdb235412544f58aa https://www.encodeproject.org/files/ENCFF762LUG/@@download/ENCFF762LUG.bam mm10 released s3://encode-public/2017/05/11/8c67d972-32a0-47c2-b9c9-7ebc5d0caff9/ENCFF762LUG.bam mismatched file status, experiment not submitted to GEO ENCFF803CBV bigWig signal p-value ENCSR280ZDP ATAC-seq EFO:0002034 G1E cell line Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF762LUG 121075362 Anshul Kundaje, Stanford 4b7958d325386fe07e12a9002d049216 https://www.encodeproject.org/files/ENCFF803CBV/@@download/ENCFF803CBV.bigWig mm10 released s3://encode-public/2017/05/11/8c1e206e-852e-4633-8bfa-9e37e0ccb9a2/ENCFF803CBV.bigWig mismatched file status, experiment not submitted to GEO ENCFF802KUB bigWig fold change over control ENCSR280ZDP ATAC-seq EFO:0002034 G1E cell line Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF762LUG 91985043 Anshul Kundaje, Stanford 700dcb73ffae0cf6482295dd67ec72e9 https://www.encodeproject.org/files/ENCFF802KUB/@@download/ENCFF802KUB.bigWig mm10 released s3://encode-public/2017/05/11/13a95d05-520d-40b8-809a-7a3e2fc60507/ENCFF802KUB.bigWig mismatched file status, experiment not submitted to GEO ENCFF735DAQ bed narrowPeak replicated peaks ENCSR280ZDP ATAC-seq EFO:0002034 G1E cell line Mus musculus DNA False 2016-03-30 ENCODE 1, 2 ENCFF864CFG, ENCFF866XOJ 3416821 Anshul Kundaje, Stanford 311483965eb9b0bf901d388ef116ed5a https://www.encodeproject.org/files/ENCFF735DAQ/@@download/ENCFF735DAQ.bed.gz mm10 archived s3://encode-public/2017/05/11/02619445-d084-46d6-92a7-a287e443dfb0/ENCFF735DAQ.bed.gz mismatched file status, experiment not submitted to GEO ENCFF316ZKR bigBed narrowPeak replicated peaks ENCSR280ZDP ATAC-seq EFO:0002034 G1E cell line Mus musculus DNA False 2016-03-30 ENCODE 1, 2 ENCFF735DAQ 6443461 Anshul Kundaje, Stanford 94745213d24ced4652fe5dbc25e432ba https://www.encodeproject.org/files/ENCFF316ZKR/@@download/ENCFF316ZKR.bigBed mm10 archived s3://encode-public/2017/05/11/9bf281b5-afed-45b0-b382-cf3630726339/ENCFF316ZKR.bigBed mismatched file status, experiment not submitted to GEO ENCFF583HWE fastq reads ENCSR428BSK ATAC-seq EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA False 2016-03-30 ENCODE 2 1 50 single-ended 1945973349 Ross Hardison, PennState b4bb7b54933d7386a99ce1810db4f199 https://www.encodeproject.org/files/ENCFF583HWE/@@download/ENCFF583HWE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/09/06d4c71a-d160-4059-b112-1320c54cfed2/ENCFF583HWE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF455RDD fastq reads ENCSR428BSK ATAC-seq EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA False 2016-03-30 ENCODE 1 1 50 single-ended 2013080360 Ross Hardison, PennState 6748fabe4683583ed437f8817e108809 https://www.encodeproject.org/files/ENCFF455RDD/@@download/ENCFF455RDD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/09/0af22478-097a-4811-bbe0-e9cf98fba206/ENCFF455RDD.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF052WAB bigBed bed3+ filtered peaks ENCSR428BSK ATAC-seq EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA False 2016-03-30 ENCODE 1 1 ENCFF510BUX, ENCFF790DJT 980915 Ross Hardison, PennState e541f471c6c4840596d47a05bb974eba https://www.encodeproject.org/files/ENCFF052WAB/@@download/ENCFF052WAB.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/df67c4b9-dcf8-4162-9605-4f6ea9f90c7f/ENCFF052WAB.bigBed mismatched file status, experiment not submitted to GEO ENCFF819UNG bam alignments ENCSR428BSK ATAC-seq EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA False 2016-03-30 ENCODE 1 ENCFF455RDD 1430043592 Ross Hardison, PennState 51cfb58414865af4fb1d3c66c89f8887 https://www.encodeproject.org/files/ENCFF819UNG/@@download/ENCFF819UNG.bam mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/46985681-ecfc-43da-9f71-89c97b2571f3/ENCFF819UNG.bam mismatched file status, experiment not submitted to GEO ENCFF634NIV bigWig signal of all reads ENCSR428BSK ATAC-seq EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA False 2016-03-30 ENCODE 1 1 ENCFF819UNG 3383355102 Ross Hardison, PennState ca8e5815948d1706ae2d190ddf630301 https://www.encodeproject.org/files/ENCFF634NIV/@@download/ENCFF634NIV.bigWig mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/0d7cb1e6-dc93-423b-9ba8-4dc8fc3dc601/ENCFF634NIV.bigWig mismatched file status, experiment not submitted to GEO ENCFF877TZQ bigBed bed3+ peaks ENCSR428BSK ATAC-seq EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA False 2016-03-30 ENCODE 2 1 ENCFF643SJB 1111753 Ross Hardison, PennState f3d605b816646756d5a78933c96b5afa https://www.encodeproject.org/files/ENCFF877TZQ/@@download/ENCFF877TZQ.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/1bec7757-c06a-48dd-8ab9-2c0f5828c394/ENCFF877TZQ.bigBed mismatched file status, experiment not submitted to GEO ENCFF034JPK bigWig signal of all reads ENCSR428BSK ATAC-seq EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA False 2016-03-30 ENCODE 2 1 ENCFF643SJB 3358911938 Ross Hardison, PennState 3f2a54aa7a63f485a86fa2b297cafad6 https://www.encodeproject.org/files/ENCFF034JPK/@@download/ENCFF034JPK.bigWig mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/fd615c10-1a2e-458c-9508-96c3ba062193/ENCFF034JPK.bigWig mismatched file status, experiment not submitted to GEO ENCFF918WJB bigBed bed3+ filtered peaks ENCSR428BSK ATAC-seq EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA False 2016-03-30 ENCODE 2 1 ENCFF790DJT, ENCFF877TZQ 1076168 Ross Hardison, PennState bfa63b187e4a2c196d8aaee8b9ddc645 https://www.encodeproject.org/files/ENCFF918WJB/@@download/ENCFF918WJB.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/86bef448-23bb-49be-a925-6d601877fa16/ENCFF918WJB.bigBed mismatched file status, experiment not submitted to GEO ENCFF643SJB bam alignments ENCSR428BSK ATAC-seq EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA False 2016-03-30 ENCODE 2 ENCFF583HWE 1391515305 Ross Hardison, PennState 3eafa7e8c38f07db1d83cc263ae8c5f1 https://www.encodeproject.org/files/ENCFF643SJB/@@download/ENCFF643SJB.bam mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/6e0a594e-f215-4bd9-be0a-43546927af06/ENCFF643SJB.bam mismatched file status, experiment not submitted to GEO ENCFF065KLA bigBed narrowPeak filtered regions ENCSR428BSK ATAC-seq EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA False 2016-03-30 ENCODE 1 1 ENCFF761XWG, ENCFF790DJT 2721956 Ross Hardison, PennState 41b4c8450fe4914ad7a88ebe00e2128c https://www.encodeproject.org/files/ENCFF065KLA/@@download/ENCFF065KLA.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/069197bc-bade-4e2a-8935-4024a63a2079/ENCFF065KLA.bigBed mismatched file status, experiment not submitted to GEO ENCFF510BUX bigBed bed3+ peaks ENCSR428BSK ATAC-seq EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA False 2016-03-30 ENCODE 1 1 ENCFF819UNG 1017335 Ross Hardison, PennState 44e5759de1b064644218096845b5664b https://www.encodeproject.org/files/ENCFF510BUX/@@download/ENCFF510BUX.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/79802577-5a37-4dd3-af6a-dbc396273173/ENCFF510BUX.bigBed mismatched file status, experiment not submitted to GEO ENCFF761XWG bigBed narrowPeak open chromatin regions ENCSR428BSK ATAC-seq EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA False 2016-03-30 ENCODE 1 1 ENCFF819UNG 4730350 Ross Hardison, PennState b9f03189b0cd40d2d5ca01bfc4fd46ce https://www.encodeproject.org/files/ENCFF761XWG/@@download/ENCFF761XWG.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/bb5aa892-8b52-441c-9f56-0b03e39498ac/ENCFF761XWG.bigBed mismatched file status, experiment not submitted to GEO ENCFF927CIU bigBed narrowPeak open chromatin regions ENCSR428BSK ATAC-seq EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA False 2016-03-30 ENCODE 2 1 ENCFF643SJB 4266973 Ross Hardison, PennState 309d9999042617e13d119f688e698358 https://www.encodeproject.org/files/ENCFF927CIU/@@download/ENCFF927CIU.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/de5ce664-2969-45b1-96da-88601bbc9593/ENCFF927CIU.bigBed mismatched file status, experiment not submitted to GEO ENCFF145QRC bigBed narrowPeak filtered regions ENCSR428BSK ATAC-seq EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA False 2016-03-30 ENCODE 2 1 ENCFF790DJT, ENCFF927CIU 2674155 Ross Hardison, PennState 70c43810c2d869723bda814d481bdaa2 https://www.encodeproject.org/files/ENCFF145QRC/@@download/ENCFF145QRC.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/3b69fc30-3f6f-4553-987d-2171f8c5b29e/ENCFF145QRC.bigBed mismatched file status, experiment not submitted to GEO ENCFF798DKG bam alignments ENCSR428BSK ATAC-seq EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA False 2016-03-30 ENCODE 1 ENCFF455RDD 500909127 Anshul Kundaje, Stanford 4ca7d064d5b8cd9cf941240fd215819b https://www.encodeproject.org/files/ENCFF798DKG/@@download/ENCFF798DKG.bam mm10 released s3://encode-public/2017/05/11/3a063288-8eef-4537-9674-99e46570f08c/ENCFF798DKG.bam mismatched file status, experiment not submitted to GEO ENCFF955DLV bam alignments ENCSR428BSK ATAC-seq EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA False 2016-03-30 ENCODE 2 ENCFF583HWE 521618676 Anshul Kundaje, Stanford 8b47bc820f5a60677c7a01936f903df8 https://www.encodeproject.org/files/ENCFF955DLV/@@download/ENCFF955DLV.bam mm10 released s3://encode-public/2017/05/11/f75ec808-e0df-4b6c-ab55-57a6e3926476/ENCFF955DLV.bam mismatched file status, experiment not submitted to GEO ENCFF908NPR bigWig signal p-value ENCSR428BSK ATAC-seq EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA False 2016-03-30 ENCODE 1 ENCFF798DKG 133499856 Anshul Kundaje, Stanford 831517b981002b117f485cd89648a5ac https://www.encodeproject.org/files/ENCFF908NPR/@@download/ENCFF908NPR.bigWig mm10 released s3://encode-public/2017/05/11/9a07213e-5b26-44a1-8727-ed6ea4faf5c9/ENCFF908NPR.bigWig mismatched file status, experiment not submitted to GEO ENCFF513ECX bigWig fold change over control ENCSR428BSK ATAC-seq EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA False 2016-03-30 ENCODE 1 ENCFF798DKG 131896237 Anshul Kundaje, Stanford 0a0be7b0721722ce517fc74da1e4a365 https://www.encodeproject.org/files/ENCFF513ECX/@@download/ENCFF513ECX.bigWig mm10 released s3://encode-public/2017/05/11/6f532bb5-d35f-4634-a76b-f061f34ec292/ENCFF513ECX.bigWig mismatched file status, experiment not submitted to GEO ENCFF074KMS bigWig fold change over control ENCSR428BSK ATAC-seq EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA False 2016-03-30 ENCODE 2 ENCFF955DLV 137901677 Anshul Kundaje, Stanford 5851b0e377a08c1c0cd5f2f653253de1 https://www.encodeproject.org/files/ENCFF074KMS/@@download/ENCFF074KMS.bigWig mm10 released s3://encode-public/2017/05/11/2067328f-cc22-4877-a985-80a665d2d2d0/ENCFF074KMS.bigWig mismatched file status, experiment not submitted to GEO ENCFF182IBL bigWig signal p-value ENCSR428BSK ATAC-seq EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA False 2016-03-30 ENCODE 2 ENCFF955DLV 90269542 Anshul Kundaje, Stanford 8e7fa09bd31a490008991466a802827f https://www.encodeproject.org/files/ENCFF182IBL/@@download/ENCFF182IBL.bigWig mm10 released s3://encode-public/2017/05/11/54065a79-2b80-4b95-b937-43d8f850d708/ENCFF182IBL.bigWig mismatched file status, experiment not submitted to GEO ENCFF142ZIU bed narrowPeak replicated peaks ENCSR428BSK ATAC-seq EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA False 2016-03-30 ENCODE 1, 2 ENCFF084RBS, ENCFF890BAT 4060714 Anshul Kundaje, Stanford 23f3a4ea60bdd79f934d5fb62f63404a https://www.encodeproject.org/files/ENCFF142ZIU/@@download/ENCFF142ZIU.bed.gz mm10 archived s3://encode-public/2017/05/11/dd8426ee-86ac-4c72-9345-bb9eda7650ef/ENCFF142ZIU.bed.gz mismatched file status, experiment not submitted to GEO ENCFF315LKF bigBed narrowPeak replicated peaks ENCSR428BSK ATAC-seq EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA False 2016-03-30 ENCODE 1, 2 ENCFF142ZIU 8992049 Anshul Kundaje, Stanford 9c360bebf410d8016add52dd4d8454cf https://www.encodeproject.org/files/ENCFF315LKF/@@download/ENCFF315LKF.bigBed mm10 archived s3://encode-public/2017/05/11/eb36527b-5023-4556-9024-05ea9fc1d9e0/ENCFF315LKF.bigBed mismatched file status, experiment not submitted to GEO ENCFF395IGM fastq reads ENCSR618HDK ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF395TZD 1161715167 Bing Ren, UCSD 70626f50f6c2d2e8bb0647334c21da53 https://www.encodeproject.org/files/ENCFF395IGM/@@download/ENCFF395IGM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/667c1fae-8e14-41a1-9841-3cdbe55b2fc1/ENCFF395IGM.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF699GSF fastq reads ENCSR618HDK ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF944CWK 780461675 Bing Ren, UCSD 82049da7b9c6474dfd8f720bbc6bf3f7 https://www.encodeproject.org/files/ENCFF699GSF/@@download/ENCFF699GSF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/df2ebf10-1e96-4f95-a24d-f722db0cc564/ENCFF699GSF.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF944CWK fastq reads ENCSR618HDK ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF699GSF 819874966 Bing Ren, UCSD 42820a560d6c2b49fc68773e8ea12cd8 https://www.encodeproject.org/files/ENCFF944CWK/@@download/ENCFF944CWK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/5f63925f-b257-4ac8-96bd-074d368c8801/ENCFF944CWK.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF395TZD fastq reads ENCSR618HDK ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF395IGM 1084809032 Bing Ren, UCSD 11b2da65af16747e9f560de676a53adc https://www.encodeproject.org/files/ENCFF395TZD/@@download/ENCFF395TZD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/2cbbbbbc-01ab-4330-acc0-86a6a06d9bf1/ENCFF395TZD.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF574MEU fastq reads ENCSR819QOJ ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF667HBE 1763774414 Bing Ren, UCSD 43eb01f5eb42e9cd826dd4c2a640013c https://www.encodeproject.org/files/ENCFF574MEU/@@download/ENCFF574MEU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/41527cd9-e119-4e1c-b13a-ae99e59449f3/ENCFF574MEU.fastq.gz experiment not submitted to GEO ENCFF659NJR fastq reads ENCSR819QOJ ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF703JZE 1730761047 Bing Ren, UCSD 345268c4e4547a355af1f5af03b31429 https://www.encodeproject.org/files/ENCFF659NJR/@@download/ENCFF659NJR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/dd466c2a-9e6b-47d8-ab6f-2477f5270ac0/ENCFF659NJR.fastq.gz experiment not submitted to GEO ENCFF703JZE fastq reads ENCSR819QOJ ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF659NJR 1901454713 Bing Ren, UCSD 7f4e7d99b6953b13bbe3662f69999d1e https://www.encodeproject.org/files/ENCFF703JZE/@@download/ENCFF703JZE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/a0d5bd8c-fb46-4d3f-aefe-413c2a969955/ENCFF703JZE.fastq.gz experiment not submitted to GEO ENCFF667HBE fastq reads ENCSR819QOJ ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF574MEU 1614968890 Bing Ren, UCSD 14dc158a1722cde59945d8433036a2f4 https://www.encodeproject.org/files/ENCFF667HBE/@@download/ENCFF667HBE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/2c8d23e5-ceea-44b1-9aee-e29ca9957641/ENCFF667HBE.fastq.gz experiment not submitted to GEO ENCFF795KPB bam alignments ENCSR819QOJ ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF659NJR, ENCFF703JZE 3514906019 Anshul Kundaje, Stanford b6e56768a4489fec5ff547a625960bcc https://www.encodeproject.org/files/ENCFF795KPB/@@download/ENCFF795KPB.bam mm10 released s3://encode-public/2017/04/25/a196286b-2f84-4890-a780-be7e971c3c44/ENCFF795KPB.bam experiment not submitted to GEO ENCFF051SQY bam alignments ENCSR819QOJ ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF574MEU, ENCFF667HBE 3301281011 Anshul Kundaje, Stanford a74c5dd20ed3090686d9dcbf5900057d https://www.encodeproject.org/files/ENCFF051SQY/@@download/ENCFF051SQY.bam mm10 released s3://encode-public/2017/04/25/3a383ce6-d949-4567-91cb-b339f6cd4d62/ENCFF051SQY.bam experiment not submitted to GEO ENCFF334UND bigWig signal p-value ENCSR819QOJ ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF795KPB 636105664 Anshul Kundaje, Stanford 6ba95aab663723da60c7e4058a9217f5 https://www.encodeproject.org/files/ENCFF334UND/@@download/ENCFF334UND.bigWig mm10 released s3://encode-public/2017/04/25/7a9b0f05-490c-478e-9dcb-b19a18827593/ENCFF334UND.bigWig experiment not submitted to GEO ENCFF139MNX bigWig signal p-value ENCSR819QOJ ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF051SQY 620044287 Anshul Kundaje, Stanford 7779a6d3a0331935bcff181b2792ee10 https://www.encodeproject.org/files/ENCFF139MNX/@@download/ENCFF139MNX.bigWig mm10 released s3://encode-public/2017/04/25/98ef8e9e-fe15-462e-bfa0-835f3e31f58a/ENCFF139MNX.bigWig experiment not submitted to GEO ENCFF455CIS bigWig fold change over control ENCSR819QOJ ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF051SQY 777821348 Anshul Kundaje, Stanford 65ae57d7290901bc20f3ae5fea0a0a05 https://www.encodeproject.org/files/ENCFF455CIS/@@download/ENCFF455CIS.bigWig mm10 released s3://encode-public/2017/04/26/002f1c69-57d6-47d4-8e7a-4ea59a28e534/ENCFF455CIS.bigWig experiment not submitted to GEO ENCFF810TCB bigWig fold change over control ENCSR819QOJ ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF795KPB 824870380 Anshul Kundaje, Stanford 5c2ed56e9482c9ad537c05631efaf7ba https://www.encodeproject.org/files/ENCFF810TCB/@@download/ENCFF810TCB.bigWig mm10 released s3://encode-public/2017/04/26/2ee6ab3d-16bf-469d-82eb-0266a4c1e0f4/ENCFF810TCB.bigWig experiment not submitted to GEO ENCFF535OGL fastq reads ENCSR862JVD ATAC-seq CL:0000576 monocyte primary cell Mus musculus DNA False 2017-11-15 ENCODE 1 1 48 single-ended 2436187498 Ross Hardison, PennState 0268b1c9bb436000a65c5c795e26bc59 https://www.encodeproject.org/files/ENCFF535OGL/@@download/ENCFF535OGL.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/10/06/699c849b-b901-4e5b-839e-fb2210559032/ENCFF535OGL.fastq.gz experiment not submitted to GEO ENCFF432AIW fastq reads ENCSR862JVD ATAC-seq CL:0000576 monocyte primary cell Mus musculus DNA False 2017-11-15 ENCODE 2 1 48 single-ended 2757627600 Ross Hardison, PennState 3035a1728ccb64e8f6bbeec23a727add https://www.encodeproject.org/files/ENCFF432AIW/@@download/ENCFF432AIW.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/10/06/8f17a424-48be-46ba-b55e-56245c131bf4/ENCFF432AIW.fastq.gz experiment not submitted to GEO ENCFF013EIA bigBed bed3+ peaks ENCSR862JVD ATAC-seq CL:0000576 monocyte primary cell Mus musculus DNA False 2017-11-15 ENCODE 1 1 ENCFF637UWI, ENCFF790DJT 2413915 Ross Hardison, PennState 795437fda345725c07f029dfacc22df9 https://www.encodeproject.org/files/ENCFF013EIA/@@download/ENCFF013EIA.bigBed mm10 Illumina HiSeq 2000 released s3://encode-public/2017/10/13/ca8a3480-a672-44f2-8fe2-9fcc5cf134c1/ENCFF013EIA.bigBed inconsistent assembly experiment not submitted to GEO ENCFF320TGF bigWig signal of all reads ENCSR862JVD ATAC-seq CL:0000576 monocyte primary cell Mus musculus DNA False 2017-11-15 ENCODE 1 1 ENCFF437VEJ 3841440228 Ross Hardison, PennState 13c9149387babf3a346e8a5f9db225d8 https://www.encodeproject.org/files/ENCFF320TGF/@@download/ENCFF320TGF.bigWig mm10 Illumina HiSeq 2000 released s3://encode-public/2017/10/13/1be3a354-fcb4-442b-968c-27e1dbdb0085/ENCFF320TGF.bigWig experiment not submitted to GEO ENCFF437VEJ bam alignments ENCSR862JVD ATAC-seq CL:0000576 monocyte primary cell Mus musculus DNA False 2017-11-15 ENCODE 1 1 ENCFF535OGL 2062305268 Ross Hardison, PennState 8d4e9e1a3bcffd1751bbba30fdc2546f https://www.encodeproject.org/files/ENCFF437VEJ/@@download/ENCFF437VEJ.bam mm10 Illumina NextSeq 500 released s3://encode-public/2017/10/13/bb1d9165-5202-4232-933d-c196dcbc4515/ENCFF437VEJ.bam experiment not submitted to GEO ENCFF491KLQ bigBed narrowPeak peaks ENCSR862JVD ATAC-seq CL:0000576 monocyte primary cell Mus musculus DNA False 2017-11-15 ENCODE 1 1 ENCFF437VEJ 18429673 Ross Hardison, PennState 19599042f15684e003f1efa7735596f1 https://www.encodeproject.org/files/ENCFF491KLQ/@@download/ENCFF491KLQ.bigBed mm10 Illumina HiSeq 2000 released s3://encode-public/2017/10/13/9928f39e-dbed-4bf6-bfea-321e911b9546/ENCFF491KLQ.bigBed experiment not submitted to GEO ENCFF702JFT bigBed narrowPeak peaks ENCSR862JVD ATAC-seq CL:0000576 monocyte primary cell Mus musculus DNA False 2017-11-15 ENCODE 1 1 ENCFF491KLQ, ENCFF790DJT 3104736 Ross Hardison, PennState b26c41ea05b4b387d44b7097c720e5e6 https://www.encodeproject.org/files/ENCFF702JFT/@@download/ENCFF702JFT.bigBed mm10 Illumina HiSeq 2000 released s3://encode-public/2017/10/13/91ca0860-5cbd-401a-af88-ed0403fd4c71/ENCFF702JFT.bigBed inconsistent assembly experiment not submitted to GEO ENCFF137NFM bam alignments ENCSR862JVD ATAC-seq CL:0000576 monocyte primary cell Mus musculus DNA False 2017-11-15 ENCODE 2 1 ENCFF432AIW 2389101362 Ross Hardison, PennState 5ca69143d85401706a6a7e2656c8c83e https://www.encodeproject.org/files/ENCFF137NFM/@@download/ENCFF137NFM.bam mm10 Illumina NextSeq 500 released s3://encode-public/2017/10/13/5e61d250-fac1-4428-b3f5-4c48da8758bd/ENCFF137NFM.bam experiment not submitted to GEO ENCFF951KIF bigBed narrowPeak peaks ENCSR862JVD ATAC-seq CL:0000576 monocyte primary cell Mus musculus DNA False 2017-11-15 ENCODE 2 1 ENCFF137NFM 17005869 Ross Hardison, PennState bb16b33eead1a253848352a32fcb6709 https://www.encodeproject.org/files/ENCFF951KIF/@@download/ENCFF951KIF.bigBed mm10 Illumina HiSeq 2000 released s3://encode-public/2017/10/13/73cb3770-9814-4fc5-a61a-e1a6d1f66a35/ENCFF951KIF.bigBed experiment not submitted to GEO ENCFF530RED bigBed narrowPeak peaks ENCSR862JVD ATAC-seq CL:0000576 monocyte primary cell Mus musculus DNA False 2017-11-15 ENCODE 2 1 ENCFF790DJT, ENCFF951KIF 3067792 Ross Hardison, PennState e3b3bb86059eceadc76e107a993ed3b7 https://www.encodeproject.org/files/ENCFF530RED/@@download/ENCFF530RED.bigBed mm10 Illumina HiSeq 2000 released s3://encode-public/2017/10/13/b8fabfb8-318f-40a1-8394-2aa42b8b7297/ENCFF530RED.bigBed inconsistent assembly experiment not submitted to GEO ENCFF294EJD bigBed bed3+ peaks ENCSR862JVD ATAC-seq CL:0000576 monocyte primary cell Mus musculus DNA False 2017-11-15 ENCODE 2 1 ENCFF790DJT, ENCFF835JPV 2029973 Ross Hardison, PennState 4961bcd468c680717823b145c77be9ff https://www.encodeproject.org/files/ENCFF294EJD/@@download/ENCFF294EJD.bigBed mm10 Illumina HiSeq 2000 released s3://encode-public/2017/10/13/f08e6820-667d-4478-ab40-a53742813767/ENCFF294EJD.bigBed inconsistent assembly experiment not submitted to GEO ENCFF637UWI bigBed bed3+ peaks ENCSR862JVD ATAC-seq CL:0000576 monocyte primary cell Mus musculus DNA False 2017-11-15 ENCODE 1 1 ENCFF437VEJ 2441833 Ross Hardison, PennState 42effdd208439d651581b5cbf99223b2 https://www.encodeproject.org/files/ENCFF637UWI/@@download/ENCFF637UWI.bigBed mm10 Illumina HiSeq 2000 released s3://encode-public/2017/10/13/a4c7baa5-c432-4868-a51b-946112f0731b/ENCFF637UWI.bigBed experiment not submitted to GEO ENCFF865ORK bigWig signal of all reads ENCSR862JVD ATAC-seq CL:0000576 monocyte primary cell Mus musculus DNA False 2017-11-15 ENCODE 2 1 ENCFF137NFM 3699286383 Ross Hardison, PennState 6e46da8ad943eff61698b68e94c012de https://www.encodeproject.org/files/ENCFF865ORK/@@download/ENCFF865ORK.bigWig mm10 Illumina HiSeq 2000 released s3://encode-public/2017/10/13/433b8412-ab49-4b1b-823a-170bb6752972/ENCFF865ORK.bigWig experiment not submitted to GEO ENCFF835JPV bigBed bed3+ peaks ENCSR862JVD ATAC-seq CL:0000576 monocyte primary cell Mus musculus DNA False 2017-11-15 ENCODE 2 1 ENCFF137NFM 2055953 Ross Hardison, PennState bc14ece562e1fc6d1f8992cd15ac3498 https://www.encodeproject.org/files/ENCFF835JPV/@@download/ENCFF835JPV.bigBed mm10 Illumina HiSeq 2000 released s3://encode-public/2017/10/13/0ba9e977-7457-428b-9923-b1b537decd7b/ENCFF835JPV.bigBed experiment not submitted to GEO ENCFF243ROW fastq reads ENCSR255XTC ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF702NAP 1273125834 Bing Ren, UCSD 4e62606c38f1db9590741a2828fc316e https://www.encodeproject.org/files/ENCFF243ROW/@@download/ENCFF243ROW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/056dbf29-ea5b-498d-aaab-ec839f1fcb51/ENCFF243ROW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF702NAP fastq reads ENCSR255XTC ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF243ROW 1150357183 Bing Ren, UCSD 9d81b42b0d41fd7f2f7be0aa90f707b2 https://www.encodeproject.org/files/ENCFF702NAP/@@download/ENCFF702NAP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/d82f2b25-b4b4-4baf-bd8a-6bc205bc7c71/ENCFF702NAP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF894ZND fastq reads ENCSR255XTC ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF788EQO 1026189189 Bing Ren, UCSD 3021ae28f7a0cb603bc4fd5875b15021 https://www.encodeproject.org/files/ENCFF894ZND/@@download/ENCFF894ZND.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/4e41561a-f069-46a2-a777-f6683f1a1bf7/ENCFF894ZND.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF788EQO fastq reads ENCSR255XTC ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF894ZND 1076998827 Bing Ren, UCSD 5f21e93458e48e5f3a70d4238adfdb12 https://www.encodeproject.org/files/ENCFF788EQO/@@download/ENCFF788EQO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/df04ae07-05ad-41cf-861f-f24c0a34baa0/ENCFF788EQO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF987EVS fastq reads ENCSR302LIV ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF772GVP 1592040092 Bing Ren, UCSD 18656cfaa209e8f28e85f569bdd28ca3 https://www.encodeproject.org/files/ENCFF987EVS/@@download/ENCFF987EVS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/e8581401-e699-469d-945d-d3dd9fa60488/ENCFF987EVS.fastq.gz experiment not submitted to GEO ENCFF409BPW fastq reads ENCSR302LIV ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF016UWL 2048695563 Bing Ren, UCSD 7865408462373e63961bac8685b4febc https://www.encodeproject.org/files/ENCFF409BPW/@@download/ENCFF409BPW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/3f6ef0b6-9515-488c-8e97-75ce058902a8/ENCFF409BPW.fastq.gz experiment not submitted to GEO ENCFF016UWL fastq reads ENCSR302LIV ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF409BPW 2247231335 Bing Ren, UCSD 917681cb5d13bdeb3c4970808dae3a1a https://www.encodeproject.org/files/ENCFF016UWL/@@download/ENCFF016UWL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/849052e5-6ea3-4a84-9b96-27f7d1b113d0/ENCFF016UWL.fastq.gz experiment not submitted to GEO ENCFF772GVP fastq reads ENCSR302LIV ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF987EVS 1778991610 Bing Ren, UCSD bb0c7275394f5e81081b68050f4c5fa9 https://www.encodeproject.org/files/ENCFF772GVP/@@download/ENCFF772GVP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/db11896a-863b-44cb-8e9b-f6fe8d231605/ENCFF772GVP.fastq.gz experiment not submitted to GEO ENCFF929LOH bam alignments ENCSR302LIV ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF016UWL, ENCFF409BPW 3338046887 Anshul Kundaje, Stanford 1f99398460baf67c82109202f77a17e7 https://www.encodeproject.org/files/ENCFF929LOH/@@download/ENCFF929LOH.bam mm10 released s3://encode-public/2017/04/25/0ae10908-10a6-4437-82d8-ecec1fd227cd/ENCFF929LOH.bam experiment not submitted to GEO ENCFF848NLJ bam alignments ENCSR302LIV ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF772GVP, ENCFF987EVS 2511001262 Anshul Kundaje, Stanford ebe9fc10c7e30206e306c0de3691ecab https://www.encodeproject.org/files/ENCFF848NLJ/@@download/ENCFF848NLJ.bam mm10 released s3://encode-public/2017/04/25/dd60262f-9389-4213-9af1-9e9528f40506/ENCFF848NLJ.bam experiment not submitted to GEO ENCFF451OAM bigWig signal p-value ENCSR302LIV ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF929LOH 514219997 Anshul Kundaje, Stanford 170be18e51595f45c8f8bcb19880dfe6 https://www.encodeproject.org/files/ENCFF451OAM/@@download/ENCFF451OAM.bigWig mm10 released s3://encode-public/2017/04/25/534b82fb-f573-4506-bcd1-e9dde9861352/ENCFF451OAM.bigWig experiment not submitted to GEO ENCFF183HKJ bigWig signal p-value ENCSR302LIV ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF848NLJ 401056041 Anshul Kundaje, Stanford 48970b729db07c76f62435e8352c9808 https://www.encodeproject.org/files/ENCFF183HKJ/@@download/ENCFF183HKJ.bigWig mm10 released s3://encode-public/2017/04/25/9791c002-07b5-47eb-9c8e-5971ab82ce91/ENCFF183HKJ.bigWig experiment not submitted to GEO ENCFF643SRL bigWig fold change over control ENCSR302LIV ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF929LOH 721888912 Anshul Kundaje, Stanford ef36e26a4e2437f8911fcb03c4652014 https://www.encodeproject.org/files/ENCFF643SRL/@@download/ENCFF643SRL.bigWig mm10 released s3://encode-public/2017/04/26/4c788ddd-8372-44bc-b3ff-b6f49fa1ecec/ENCFF643SRL.bigWig experiment not submitted to GEO ENCFF051QSE bigWig fold change over control ENCSR302LIV ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF848NLJ 537504603 Anshul Kundaje, Stanford 93b305a1b9f46ec12edfc1d5dda711d7 https://www.encodeproject.org/files/ENCFF051QSE/@@download/ENCFF051QSE.bigWig mm10 released s3://encode-public/2017/04/26/2f8734f8-5b62-4dc2-9d64-38f2acdc8c5d/ENCFF051QSE.bigWig experiment not submitted to GEO ENCFF104GCO fastq reads ENCSR358MOW ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF737HFT 981842974 Bing Ren, UCSD 810fb19350b0f678df94b8f85a74c6b5 https://www.encodeproject.org/files/ENCFF104GCO/@@download/ENCFF104GCO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/dd3b343f-0009-4c07-ba42-109d47f86bef/ENCFF104GCO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF166ANK fastq reads ENCSR358MOW ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF512CMK 879187424 Bing Ren, UCSD 61758ce8f446b769896d280ee288c940 https://www.encodeproject.org/files/ENCFF166ANK/@@download/ENCFF166ANK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/1b4c219b-ba04-4986-931a-474c765168f3/ENCFF166ANK.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF512CMK fastq reads ENCSR358MOW ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF166ANK 961745053 Bing Ren, UCSD f5ea9e23ed436e28115d1100731043ea https://www.encodeproject.org/files/ENCFF512CMK/@@download/ENCFF512CMK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/25314edb-fa8c-490d-b522-51ed1f4b7f1b/ENCFF512CMK.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF737HFT fastq reads ENCSR358MOW ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF104GCO 1066900566 Bing Ren, UCSD 963b3ee317fda67e9588de2eb46bf425 https://www.encodeproject.org/files/ENCFF737HFT/@@download/ENCFF737HFT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/8d80766d-e78e-4a2f-b64d-d2b1b15af4ec/ENCFF737HFT.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF724ZGT fastq reads ENCSR261ICG ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF312YEC 1245699255 Bing Ren, UCSD e099b65384549f878b80778d683c66f4 https://www.encodeproject.org/files/ENCFF724ZGT/@@download/ENCFF724ZGT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/6df66cd5-98d0-457c-ba05-a158da78bac0/ENCFF724ZGT.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF322LEO fastq reads ENCSR261ICG ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF139WZE 966470435 Bing Ren, UCSD 9e14c4d62631aa836310b9008fc525e1 https://www.encodeproject.org/files/ENCFF322LEO/@@download/ENCFF322LEO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/a89147a1-7fcc-4ec7-9153-0f17b6a4291a/ENCFF322LEO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF312YEC fastq reads ENCSR261ICG ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF724ZGT 1345336515 Bing Ren, UCSD fa9b97752c5f831db063bdb03b0ecf0d https://www.encodeproject.org/files/ENCFF312YEC/@@download/ENCFF312YEC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/5b68adac-4220-4d77-b72f-b259a9903cec/ENCFF312YEC.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF139WZE fastq reads ENCSR261ICG ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF322LEO 925331637 Bing Ren, UCSD 2d73c93bf39a45a71a408ffb397e2281 https://www.encodeproject.org/files/ENCFF139WZE/@@download/ENCFF139WZE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/29cf294b-7a0e-49d1-a9bc-b78f1ef6ade2/ENCFF139WZE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF224TAO fastq reads ENCSR627OCR ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF577XAL 2085345251 Bing Ren, UCSD dcfe4837a70deedfd6800133f8f0cb0b https://www.encodeproject.org/files/ENCFF224TAO/@@download/ENCFF224TAO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/6a77ac80-6b21-4df6-ae56-fc314e17dbba/ENCFF224TAO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF872IZI fastq reads ENCSR627OCR ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF427HTC 1010989475 Bing Ren, UCSD 0761bf9e93a77af8f4fc4417bfa84b0e https://www.encodeproject.org/files/ENCFF872IZI/@@download/ENCFF872IZI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/626c564e-8f4b-443f-a437-cd05315cef94/ENCFF872IZI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF577XAL fastq reads ENCSR627OCR ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF224TAO 1878916604 Bing Ren, UCSD bcde319ebddcca40ba974ca816aeb6bb https://www.encodeproject.org/files/ENCFF577XAL/@@download/ENCFF577XAL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/55fd0e9f-8e06-4c6d-9753-e25093ab099f/ENCFF577XAL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF427HTC fastq reads ENCSR627OCR ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF872IZI 1122479011 Bing Ren, UCSD 43b41397bf13f38b09ba0dc6aa3ee7c8 https://www.encodeproject.org/files/ENCFF427HTC/@@download/ENCFF427HTC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/7720b75c-208e-4a34-8bec-043faea42d58/ENCFF427HTC.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF827RUE fastq reads ENCSR904UKR ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 6 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 40 paired-ended 2 ENCFF364YRE 2377554083 Manuel Garber, UMass c8888858859ab988475b020cacc5fb54 SRA:SRR5210440 https://www.encodeproject.org/files/ENCFF827RUE/@@download/ENCFF827RUE.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/a23153bd-10d2-48f8-a917-548556d068e4/ENCFF827RUE.fastq.gz unreplicated experiment ENCFF364YRE fastq reads ENCSR904UKR ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 6 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 40 paired-ended 1 ENCFF827RUE 2344214500 Manuel Garber, UMass 5889d2ffd9ea53bc1a1891a77387071c SRA:SRR5210440 https://www.encodeproject.org/files/ENCFF364YRE/@@download/ENCFF364YRE.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/7b4689aa-34d4-4675-ad89-7814bf25f9e1/ENCFF364YRE.fastq.gz unreplicated experiment ENCFF788XEN fastq reads ENCSR116SPR ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 30 minute DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 1 ENCFF107KTU 1048018488 Manuel Garber, UMass 06c7a711a38ddac5b2ef9e3f5df2aa17 SRA:SRR5210380 https://www.encodeproject.org/files/ENCFF788XEN/@@download/ENCFF788XEN.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/c912e44f-b2d6-4f7b-810e-082e56927473/ENCFF788XEN.fastq.gz ENCFF107KTU fastq reads ENCSR116SPR ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 30 minute DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 2 ENCFF788XEN 1068774052 Manuel Garber, UMass 174335ed0960762e712774a977bf418e SRA:SRR5210380 https://www.encodeproject.org/files/ENCFF107KTU/@@download/ENCFF107KTU.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/d6336268-6764-4263-9570-a4b11033db60/ENCFF107KTU.fastq.gz ENCFF275ONY fastq reads ENCSR116SPR ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 30 minute DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 2 1 42 paired-ended 1 ENCFF523EGM 1745175453 Manuel Garber, UMass 38a0c62f9150a74450bbe218d449c195 SRA:SRR5210381 https://www.encodeproject.org/files/ENCFF275ONY/@@download/ENCFF275ONY.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/01b27053-3235-4034-a5e8-795212068132/ENCFF275ONY.fastq.gz ENCFF523EGM fastq reads ENCSR116SPR ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 30 minute DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 2 1 42 paired-ended 2 ENCFF275ONY 1829514806 Manuel Garber, UMass bdd320bee6eaf29818a7931ba1ca818e SRA:SRR5210381 https://www.encodeproject.org/files/ENCFF523EGM/@@download/ENCFF523EGM.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/36b59d4c-e954-4dcd-b576-aa0ba587b5c1/ENCFF523EGM.fastq.gz ENCFF847GIG fastq reads ENCSR208NBF ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 2 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 40 paired-ended 2 ENCFF062BFO 4650698156 Manuel Garber, UMass 7a466e73af819b921217379af3b04fbc SRA:SRR5210391 https://www.encodeproject.org/files/ENCFF847GIG/@@download/ENCFF847GIG.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/6cf53761-1e1f-4321-9bdd-e5de0f6da85c/ENCFF847GIG.fastq.gz unreplicated experiment ENCFF062BFO fastq reads ENCSR208NBF ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 2 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 40 paired-ended 1 ENCFF847GIG 4557863000 Manuel Garber, UMass 5bd405b8b4d1287582689473ea51e112 SRA:SRR5210391 https://www.encodeproject.org/files/ENCFF062BFO/@@download/ENCFF062BFO.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/c64a9785-df0b-4c2c-830e-57abc4f024ed/ENCFF062BFO.fastq.gz unreplicated experiment ENCFF608JIC fastq reads ENCSR059IHA ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 30 minute DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 40 paired-ended 2 ENCFF437RPD 3127710133 Manuel Garber, UMass 0d1c0c49bce62be6c819cfab307a469c SRA:SRR5210376 https://www.encodeproject.org/files/ENCFF608JIC/@@download/ENCFF608JIC.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/1d9555af-d9e5-4801-87fd-2fb1a71a461c/ENCFF608JIC.fastq.gz unreplicated experiment ENCFF437RPD fastq reads ENCSR059IHA ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 30 minute DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 40 paired-ended 1 ENCFF608JIC 2946100662 Manuel Garber, UMass c4adb2ada456bd759ffcb429552600a2 SRA:SRR5210376 https://www.encodeproject.org/files/ENCFF437RPD/@@download/ENCFF437RPD.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/05678572-49ec-40da-9bd0-53c90ef7afbd/ENCFF437RPD.fastq.gz unreplicated experiment ENCFF703BZC fastq reads ENCSR515CDW ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 2 ENCFF502PHC 1978216648 Michael Snyder, Stanford d06b011ead318644f418c3e30b81337b https://www.encodeproject.org/files/ENCFF703BZC/@@download/ENCFF703BZC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/07/5dcc0a00-a5c6-4d72-8652-a5bc5f1431aa/ENCFF703BZC.fastq.gz experiment not submitted to GEO ENCFF502PHC fastq reads ENCSR515CDW ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 1 ENCFF703BZC 1938330598 Michael Snyder, Stanford 719cc23817f9dd6f1177eb58eaeaf781 https://www.encodeproject.org/files/ENCFF502PHC/@@download/ENCFF502PHC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/07/dc574103-0697-4e31-b5b1-01cdff59432c/ENCFF502PHC.fastq.gz experiment not submitted to GEO ENCFF388DNI bam alignments ENCSR515CDW ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF502PHC, ENCFF703BZC 1770560274 Anshul Kundaje, Stanford 4cf2ad0354b8ee7c8ed72f68f6afdc5e https://www.encodeproject.org/files/ENCFF388DNI/@@download/ENCFF388DNI.bam GRCh38 released s3://encode-public/2017/04/01/907c4933-783a-4b0a-8bd1-ae79dbdce5f6/ENCFF388DNI.bam experiment not submitted to GEO ENCFF074XBT bigWig signal p-value ENCSR515CDW ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF388DNI 222922851 Anshul Kundaje, Stanford 65ee908808e00042f36ec2ae37597c78 https://www.encodeproject.org/files/ENCFF074XBT/@@download/ENCFF074XBT.bigWig GRCh38 released s3://encode-public/2017/04/01/f9ee6bb2-edde-47e7-b05f-3c2eb54b920a/ENCFF074XBT.bigWig experiment not submitted to GEO ENCFF481FBE bigWig fold change over control ENCSR515CDW ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF388DNI 280944585 Anshul Kundaje, Stanford f3955da1bcecb9a937b7f9ef210ec656 https://www.encodeproject.org/files/ENCFF481FBE/@@download/ENCFF481FBE.bigWig GRCh38 released s3://encode-public/2017/04/01/c8668d38-e2c4-4b6c-95c2-ca8fc3fc1b47/ENCFF481FBE.bigWig experiment not submitted to GEO ENCFF258GFE fastq reads ENCSR068YGC ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF826YDW 869889383 Bing Ren, UCSD 47e5e6fef8a850611c052588774749e6 https://www.encodeproject.org/files/ENCFF258GFE/@@download/ENCFF258GFE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/7147b5d1-c0e0-40c9-abfd-be1e265fdad7/ENCFF258GFE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF753WMG fastq reads ENCSR068YGC ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF031SEH 975912286 Bing Ren, UCSD 87f27ba91f24cd01a835184bfc40aa13 https://www.encodeproject.org/files/ENCFF753WMG/@@download/ENCFF753WMG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/fcc51183-3e53-43de-baf6-1f44c150ed50/ENCFF753WMG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF826YDW fastq reads ENCSR068YGC ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF258GFE 793167103 Bing Ren, UCSD fc0eac84acbac77dc1b5256381e61de9 https://www.encodeproject.org/files/ENCFF826YDW/@@download/ENCFF826YDW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/e5136da2-7607-4163-8823-8f062029726a/ENCFF826YDW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF031SEH fastq reads ENCSR068YGC ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF753WMG 1069351913 Bing Ren, UCSD 599082d63efa3f4b5085555017fcf766 https://www.encodeproject.org/files/ENCFF031SEH/@@download/ENCFF031SEH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/f32a0d2f-3a2d-4342-bcd6-8f95289dabaf/ENCFF031SEH.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF769SYG fastq reads ENCSR384JBF ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF948TDP 1677901727 Bing Ren, UCSD d685fd84cf42007ba64e095a22411727 https://www.encodeproject.org/files/ENCFF769SYG/@@download/ENCFF769SYG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/496370cc-0588-4301-84a7-2d2ed2193ace/ENCFF769SYG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF227ATX fastq reads ENCSR384JBF ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF307UMX 1551766807 Bing Ren, UCSD cde5b708451d7659960aad45d4acbc9e https://www.encodeproject.org/files/ENCFF227ATX/@@download/ENCFF227ATX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/5ee4b9ab-ca2a-4b49-a53d-214d834a1558/ENCFF227ATX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF948TDP fastq reads ENCSR384JBF ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF769SYG 1870924542 Bing Ren, UCSD 4454da9f7a5a7230b0e78921718efc6c https://www.encodeproject.org/files/ENCFF948TDP/@@download/ENCFF948TDP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/ab6b4484-6de1-43ab-a0e9-76b0f48731a2/ENCFF948TDP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF307UMX fastq reads ENCSR384JBF ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF227ATX 1713378956 Bing Ren, UCSD 812466c70ffc704f3eba554b09931cab https://www.encodeproject.org/files/ENCFF307UMX/@@download/ENCFF307UMX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/bbd1e4e2-8311-4fd6-90ae-45547e499fe7/ENCFF307UMX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF034PTL fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 2 ENCFF377GEJ 2273695445 Michael Snyder, Stanford 196df0eb35d4fe80de6b6d6b5f4fe769 https://www.encodeproject.org/files/ENCFF034PTL/@@download/ENCFF034PTL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/a599758e-d9bf-4405-ad3e-8a518a63ebd3/ENCFF034PTL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF935YRP fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 2 ENCFF583LQV 2898466732 Michael Snyder, Stanford 2bc4b5992cd57cc9695f4c268440dd5c https://www.encodeproject.org/files/ENCFF935YRP/@@download/ENCFF935YRP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/6e416ebb-2530-444d-b760-12949d799f1d/ENCFF935YRP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF330JDC fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 1 ENCFF279JTO 2709533141 Michael Snyder, Stanford 2b44663e571400ea2ce2177f5a31f6bd https://www.encodeproject.org/files/ENCFF330JDC/@@download/ENCFF330JDC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/249cfd8a-4550-48ae-afb8-bfb16772bd4d/ENCFF330JDC.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF265XDK fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 2 ENCFF575ZMR 2455899238 Michael Snyder, Stanford 82d09880621656196aa13d1ca321d747 https://www.encodeproject.org/files/ENCFF265XDK/@@download/ENCFF265XDK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/89c97d37-18ee-4d0f-9e68-824d7484518f/ENCFF265XDK.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF076WQW fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 1 ENCFF679AOR 474751728 Michael Snyder, Stanford 3f1ba880c4351183191888491db0f933 https://www.encodeproject.org/files/ENCFF076WQW/@@download/ENCFF076WQW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d29e3c36-4d60-4ea0-a4d8-f5f41cfe2100/ENCFF076WQW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF573OUJ fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 2 ENCFF840XUI 1270253966 Michael Snyder, Stanford 1cc572f2850ac7c3475bf40e07e99471 https://www.encodeproject.org/files/ENCFF573OUJ/@@download/ENCFF573OUJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/acddf8d9-4b02-42b6-bbfc-dab8461886e9/ENCFF573OUJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF951AVL fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 2 ENCFF929UBK 1577834092 Michael Snyder, Stanford 8587c053dfc041fd70d1e74eecffcccf https://www.encodeproject.org/files/ENCFF951AVL/@@download/ENCFF951AVL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/f5c38c6d-2803-4567-96f6-f1b631084885/ENCFF951AVL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF840XUI fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 1 ENCFF573OUJ 1208005514 Michael Snyder, Stanford 273578d9fc97e2e82925b4e4a444f1cf https://www.encodeproject.org/files/ENCFF840XUI/@@download/ENCFF840XUI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/5eb5ac7b-0bf6-471e-ae8f-7d8e64dead87/ENCFF840XUI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF981IIF fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 1 ENCFF860BKN 624188335 Michael Snyder, Stanford 40f41db85cabcac4bb49d9b38d1841ff https://www.encodeproject.org/files/ENCFF981IIF/@@download/ENCFF981IIF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/16b0f457-c235-4594-b385-57520d9a78b1/ENCFF981IIF.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF575ZMR fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 1 ENCFF265XDK 2251608082 Michael Snyder, Stanford 6bc04e326dfe1ac845a9f392d6cd41b0 https://www.encodeproject.org/files/ENCFF575ZMR/@@download/ENCFF575ZMR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/b16d7b9b-6920-485a-8a46-bbbe722fa02b/ENCFF575ZMR.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF679AOR fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 2 ENCFF076WQW 497022051 Michael Snyder, Stanford a709f22089ed490d471877b93b773504 https://www.encodeproject.org/files/ENCFF679AOR/@@download/ENCFF679AOR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/45a508ec-0e05-4587-9633-a12e1394a466/ENCFF679AOR.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF377GEJ fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 1 ENCFF034PTL 2094404924 Michael Snyder, Stanford 8bda8eaeb08d2d8c468047b608246160 https://www.encodeproject.org/files/ENCFF377GEJ/@@download/ENCFF377GEJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/a403f5fe-ed12-4332-875d-b3e4b6ea8cfb/ENCFF377GEJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF583LQV fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 1 ENCFF935YRP 2781923460 Michael Snyder, Stanford 35980f862930b433afb9a3d4cb87cd68 https://www.encodeproject.org/files/ENCFF583LQV/@@download/ENCFF583LQV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/2c1f57ac-f0e4-4fa3-a201-dac0635accd2/ENCFF583LQV.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF929UBK fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 1 ENCFF951AVL 1457341079 Michael Snyder, Stanford 5f33a67c428e75c616aabf1c5e43904b https://www.encodeproject.org/files/ENCFF929UBK/@@download/ENCFF929UBK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/78346f52-8116-47c7-94aa-3c5bf4a72548/ENCFF929UBK.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF860BKN fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 2 ENCFF981IIF 685102803 Michael Snyder, Stanford aeee6f212bc73977492660a51a77278b https://www.encodeproject.org/files/ENCFF860BKN/@@download/ENCFF860BKN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/6b229343-deee-49bd-b700-43b4b662b1ac/ENCFF860BKN.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF279JTO fastq reads ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 2 ENCFF330JDC 2834207478 Michael Snyder, Stanford df9696d897f851015d526174e5903086 https://www.encodeproject.org/files/ENCFF279JTO/@@download/ENCFF279JTO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/98c50cd8-c6e0-4c2c-9ae2-b35f2b9c6524/ENCFF279JTO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF764CQI bam alignments ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 2 ENCFF034PTL, ENCFF076WQW, ENCFF279JTO, ENCFF330JDC, ENCFF377GEJ, ENCFF583LQV, ENCFF679AOR, ENCFF860BKN, ENCFF935YRP, ENCFF981IIF 8978121538 Anshul Kundaje, Stanford 514eff5889ef06fea099c4927c5287cb https://www.encodeproject.org/files/ENCFF764CQI/@@download/ENCFF764CQI.bam GRCh38 released s3://encode-public/2017/04/01/133a1563-9cd6-4d49-853e-c88f2c03d4de/ENCFF764CQI.bam mismatched file status, experiment not submitted to GEO ENCFF468QNB bam alignments ENCSR677MJF ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 0 day DNA False 2017-10-10 GGR 1 ENCFF265XDK, ENCFF573OUJ, ENCFF575ZMR, ENCFF840XUI, ENCFF929UBK, ENCFF951AVL 5105968738 Anshul Kundaje, Stanford 8e9697775587a9d0fb853f0f91158976 https://www.encodeproject.org/files/ENCFF468QNB/@@download/ENCFF468QNB.bam GRCh38 released s3://encode-public/2017/04/01/5cf565bd-8bbf-43d1-bb7d-86eb7d0cb058/ENCFF468QNB.bam mismatched file status, experiment not submitted to GEO ENCFF545MGJ fastq reads ENCSR363SKQ ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF310DVL 1479473079 Bing Ren, UCSD b785dbdf83b3c9e46e3e9f74317bab75 https://www.encodeproject.org/files/ENCFF545MGJ/@@download/ENCFF545MGJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/ec81d68d-8dd2-4cb6-9f38-513b57dff889/ENCFF545MGJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF528WNO fastq reads ENCSR363SKQ ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF836EJZ 759794304 Bing Ren, UCSD 6256e282e7e94c0e17efcf2846762aec https://www.encodeproject.org/files/ENCFF528WNO/@@download/ENCFF528WNO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/cfabde46-d583-4d35-8da2-4c755c2b324a/ENCFF528WNO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF310DVL fastq reads ENCSR363SKQ ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF545MGJ 1372919250 Bing Ren, UCSD f0167c60941e3eff83f1526d48224767 https://www.encodeproject.org/files/ENCFF310DVL/@@download/ENCFF310DVL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/5aace67e-5df9-48ea-ba78-becfe5232caf/ENCFF310DVL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF836EJZ fastq reads ENCSR363SKQ ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF528WNO 711541489 Bing Ren, UCSD 0a332901dba5261a19411419aa5c9d35 https://www.encodeproject.org/files/ENCFF836EJZ/@@download/ENCFF836EJZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/dabe1b56-f426-426a-9223-f4a2759bd1d5/ENCFF836EJZ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF755EQG fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 1 ENCFF369RBA 2387994144 Michael Snyder, Stanford 14a82603f4f5ab6e0cb4f1710c744bb0 https://www.encodeproject.org/files/ENCFF755EQG/@@download/ENCFF755EQG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/038add2b-95cf-42bf-bf04-5d76cdb6c761/ENCFF755EQG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF369RBA fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 2 ENCFF755EQG 2530964914 Michael Snyder, Stanford 537f96777c28f6ac908d2c6ce4da9323 https://www.encodeproject.org/files/ENCFF369RBA/@@download/ENCFF369RBA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/f132b235-5886-4cb6-84c9-8ffbaa24739b/ENCFF369RBA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF187KNA fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 2 ENCFF366NKD 1858809476 Michael Snyder, Stanford ce4d396664155156aac30fbf21407d94 https://www.encodeproject.org/files/ENCFF187KNA/@@download/ENCFF187KNA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/b4c78c8a-8118-4e14-a7b7-be53b26da3a9/ENCFF187KNA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF779OLZ fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 2 ENCFF049CDO 524844748 Michael Snyder, Stanford 105d7d8493b406d3bd933acbde89385c https://www.encodeproject.org/files/ENCFF779OLZ/@@download/ENCFF779OLZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/844a4268-c0e5-40f4-aa43-3a1fb2456a81/ENCFF779OLZ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF717TCR fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 2 6 76 paired-ended 2 ENCFF649INK 701318901 Michael Snyder, Stanford 3ac2c2957ba7b91b4bb4755a7da96550 https://www.encodeproject.org/files/ENCFF717TCR/@@download/ENCFF717TCR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d2b88b19-c85d-4355-8e73-f6e4f0151ef3/ENCFF717TCR.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF806ING fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 2 ENCFF860NIO 1873679691 Michael Snyder, Stanford d90c037085bec2c31c04fa69ba9ad5e5 https://www.encodeproject.org/files/ENCFF806ING/@@download/ENCFF806ING.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/0b37b6b7-59cf-44fe-8f1a-b9b9d5efeb53/ENCFF806ING.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF049CDO fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 1 ENCFF779OLZ 480151444 Michael Snyder, Stanford fa1b7975f0dcb8bb24a3ee63664d3c68 https://www.encodeproject.org/files/ENCFF049CDO/@@download/ENCFF049CDO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/c4aa1976-1212-4716-8bbf-bdb8c51bf6c6/ENCFF049CDO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF332XHE fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 1 ENCFF285LLW 1971018720 Michael Snyder, Stanford a66e2beccb6d0a56dfd37b9553e0a478 https://www.encodeproject.org/files/ENCFF332XHE/@@download/ENCFF332XHE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/bff7d004-8336-42a5-97a5-abcc362d2574/ENCFF332XHE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF285LLW fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 2 ENCFF332XHE 2054440353 Michael Snyder, Stanford 177ecb15d6ac7eaf82ac4c40593679e5 https://www.encodeproject.org/files/ENCFF285LLW/@@download/ENCFF285LLW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/14fe0e4a-ec60-4849-8c02-dfab0b7e9a1f/ENCFF285LLW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF860NIO fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 1 ENCFF806ING 1782236963 Michael Snyder, Stanford 8f7a7a3a0832be22f41bf03ffc9dd232 https://www.encodeproject.org/files/ENCFF860NIO/@@download/ENCFF860NIO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/bc0d0df3-0035-48bf-b4f4-2ef8f36b1b8f/ENCFF860NIO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF649INK fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 2 6 76 paired-ended 1 ENCFF717TCR 636411784 Michael Snyder, Stanford f47c42d9c6889d7720574cafe94f8a9b https://www.encodeproject.org/files/ENCFF649INK/@@download/ENCFF649INK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/ff1b28a4-9814-4ab7-8465-a9ab4e453f10/ENCFF649INK.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF034CVJ fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 1 ENCFF628GSL 2121276081 Michael Snyder, Stanford 4dd4ca4c85ab41abe5bd4b704114b9d4 https://www.encodeproject.org/files/ENCFF034CVJ/@@download/ENCFF034CVJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/12f66969-6536-4d23-b196-98d7c784331b/ENCFF034CVJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF366NKD fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 1 ENCFF187KNA 1787855549 Michael Snyder, Stanford 9ec93818fa060f017405f9dfd22332a3 https://www.encodeproject.org/files/ENCFF366NKD/@@download/ENCFF366NKD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/7f3c4c60-64e0-46a9-bc5a-861b9f47c5d7/ENCFF366NKD.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF994ULH fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 2 ENCFF113PKL 1964109318 Michael Snyder, Stanford d5c0f11932cd3201b61ea8369593160b https://www.encodeproject.org/files/ENCFF994ULH/@@download/ENCFF994ULH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/e3b3f4c2-40e8-44e4-92a2-722e1052b30c/ENCFF994ULH.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF452ZYB fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 2 ENCFF594GXY 2019814549 Michael Snyder, Stanford 7ad08e18eef44a2a18223dd20e58c08d https://www.encodeproject.org/files/ENCFF452ZYB/@@download/ENCFF452ZYB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/072440c2-d30f-4cb6-ba06-7e3238c19700/ENCFF452ZYB.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF628GSL fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 2 ENCFF034CVJ 2249596130 Michael Snyder, Stanford 3e1234191874a1b06abf96e395b7242a https://www.encodeproject.org/files/ENCFF628GSL/@@download/ENCFF628GSL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/9bc9e7b1-6502-4192-b2aa-779a92b40780/ENCFF628GSL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF556NKW fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 2 ENCFF036AEW 2265688714 Michael Snyder, Stanford 0a84f22760541ebd8a387497296c8e4f https://www.encodeproject.org/files/ENCFF556NKW/@@download/ENCFF556NKW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/aac11078-3803-4fbf-b0af-ba06f3519aad/ENCFF556NKW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF036AEW fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 1 ENCFF556NKW 2181704161 Michael Snyder, Stanford 37271f6f4a3a57584434e677cb68bbca https://www.encodeproject.org/files/ENCFF036AEW/@@download/ENCFF036AEW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/a7a3bcaf-c9fc-4cd9-b8e9-52f9df303294/ENCFF036AEW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF113PKL fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 1 ENCFF994ULH 1805903794 Michael Snyder, Stanford da9a13d4c6d076556db41673cd2a07db https://www.encodeproject.org/files/ENCFF113PKL/@@download/ENCFF113PKL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/80975bac-0cb8-4a25-b68e-9ff17ab510bf/ENCFF113PKL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF594GXY fastq reads ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 1 ENCFF452ZYB 1833366942 Michael Snyder, Stanford d840ce5963563e710a510d294446cdaa https://www.encodeproject.org/files/ENCFF594GXY/@@download/ENCFF594GXY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/76bf5644-ba7b-41ba-ad51-4b24c2b0e227/ENCFF594GXY.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF372HEU bam alignments ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 1 ENCFF034CVJ, ENCFF036AEW, ENCFF187KNA, ENCFF366NKD, ENCFF369RBA, ENCFF556NKW, ENCFF628GSL, ENCFF755EQG 5630561670 Anshul Kundaje, Stanford 45ad4f64967355285cdc1126d503a8bf https://www.encodeproject.org/files/ENCFF372HEU/@@download/ENCFF372HEU.bam GRCh38 released s3://encode-public/2017/04/01/4686eddb-bfef-420c-8870-20a1e02d5a0b/ENCFF372HEU.bam mismatched file status, experiment not submitted to GEO ENCFF739KYO bam alignments ENCSR939WVU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4.5 day DNA False 2017-10-10 GGR 2 ENCFF049CDO, ENCFF113PKL, ENCFF285LLW, ENCFF332XHE, ENCFF452ZYB, ENCFF594GXY, ENCFF649INK, ENCFF717TCR, ENCFF779OLZ, ENCFF806ING, ENCFF860NIO, ENCFF994ULH 7058108554 Anshul Kundaje, Stanford eb43e8635a6a3be8f5b4ea02a9993983 https://www.encodeproject.org/files/ENCFF739KYO/@@download/ENCFF739KYO.bam GRCh38 released s3://encode-public/2017/04/01/036d4162-f25a-412e-91dc-24898c0d16ad/ENCFF739KYO.bam mismatched file status, experiment not submitted to GEO ENCFF859GMX fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 1 ENCFF160AIC 2623376145 Michael Snyder, Stanford d91117c0963d682a71f123e687b08533 https://www.encodeproject.org/files/ENCFF859GMX/@@download/ENCFF859GMX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/7503d724-7a98-4934-9c62-e178965f55bc/ENCFF859GMX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF590DAW fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 2 ENCFF931GOA 2908974544 Michael Snyder, Stanford 5508dff681f7d04c5ad6a04058208823 https://www.encodeproject.org/files/ENCFF590DAW/@@download/ENCFF590DAW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/95995a0c-e120-4999-9817-b4fc377a312b/ENCFF590DAW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF733BMQ fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 1 ENCFF705WCP 960923691 Michael Snyder, Stanford 791c617c65c9891b598ee745a4877b4b https://www.encodeproject.org/files/ENCFF733BMQ/@@download/ENCFF733BMQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/ea043a40-a53b-4117-a5d0-c3e1d3fc7d17/ENCFF733BMQ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF301DOO fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 1 5 76 paired-ended 1 ENCFF061PNY 544093592 Michael Snyder, Stanford 08a653bca5c95a010d2ff88b19844002 https://www.encodeproject.org/files/ENCFF301DOO/@@download/ENCFF301DOO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/3893a75c-0eed-4311-b7d2-7e250cfffcb7/ENCFF301DOO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF061PNY fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 1 5 76 paired-ended 2 ENCFF301DOO 589175190 Michael Snyder, Stanford a1c70bcaefd83bdbaba2639f3e9cebec https://www.encodeproject.org/files/ENCFF061PNY/@@download/ENCFF061PNY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/e72025aa-e2e1-4a92-a3c4-fe9ffcf3a998/ENCFF061PNY.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF127WYM fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 1 6 76 paired-ended 2 ENCFF629ULU 351593135 Michael Snyder, Stanford b9cc8a71f2c09762c8311bdc30c28c30 https://www.encodeproject.org/files/ENCFF127WYM/@@download/ENCFF127WYM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/bf83f013-2e6e-4d2a-bb06-a156e3f6df73/ENCFF127WYM.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF417FSB fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 1 ENCFF095GXA 1880874756 Michael Snyder, Stanford b01341f25e4c07e971fbda6217840190 https://www.encodeproject.org/files/ENCFF417FSB/@@download/ENCFF417FSB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/682b417b-9696-403d-ab2d-06d2df569fc4/ENCFF417FSB.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF108BMP fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 1 ENCFF330EMX 1854535166 Michael Snyder, Stanford b68dea4a063ed8df6a8e37bcffa3b1a3 https://www.encodeproject.org/files/ENCFF108BMP/@@download/ENCFF108BMP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/6f226ff1-c454-4c10-a141-f7b433e025bd/ENCFF108BMP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF923RCA fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 2 ENCFF097KAV 1188931313 Michael Snyder, Stanford 646912e98a0f4ba8229ff2ec60e69c6a https://www.encodeproject.org/files/ENCFF923RCA/@@download/ENCFF923RCA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/66e68a28-e6dd-47ac-bcc1-0be186982396/ENCFF923RCA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF884HTT fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 2 ENCFF791IPF 983430336 Michael Snyder, Stanford 45b12c19f5060822c749d4244c572a51 https://www.encodeproject.org/files/ENCFF884HTT/@@download/ENCFF884HTT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/8de6371a-81d5-4566-8c27-076927dfd2d1/ENCFF884HTT.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF398EZJ fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 2 ENCFF245AMP 1857954918 Michael Snyder, Stanford d1035e5abdf28f7bf4bfd8e40ab5f0c3 https://www.encodeproject.org/files/ENCFF398EZJ/@@download/ENCFF398EZJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/853c5cb7-2764-45a6-bd6a-5e52c0d3a21f/ENCFF398EZJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF160AIC fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 2 ENCFF859GMX 2663845726 Michael Snyder, Stanford 3aec59d94c488f20c86b9736b83e12e3 https://www.encodeproject.org/files/ENCFF160AIC/@@download/ENCFF160AIC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d3835ba7-b0e7-4cb6-beee-b7b7716d309f/ENCFF160AIC.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF097KAV fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 1 ENCFF923RCA 1166961109 Michael Snyder, Stanford 827537c3eca35a290081d9110e008c47 https://www.encodeproject.org/files/ENCFF097KAV/@@download/ENCFF097KAV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/c04180a4-ae9f-4ed0-a52b-c99521eb40df/ENCFF097KAV.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF095GXA fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 2 ENCFF417FSB 2033758790 Michael Snyder, Stanford afe65099cac1d32c3dd09cc8314b7afd https://www.encodeproject.org/files/ENCFF095GXA/@@download/ENCFF095GXA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/6d7930aa-f8ef-42bc-8a8d-3c9669c91e86/ENCFF095GXA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF791IPF fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 1 ENCFF884HTT 936848547 Michael Snyder, Stanford 3a994b3d486e50a7b974f566111a32c5 https://www.encodeproject.org/files/ENCFF791IPF/@@download/ENCFF791IPF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/4103435a-cea0-4a02-bda9-16618e14def6/ENCFF791IPF.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF330EMX fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 2 ENCFF108BMP 2003810918 Michael Snyder, Stanford 5f8eafa2bf2d5cc1a0bf776aedb40050 https://www.encodeproject.org/files/ENCFF330EMX/@@download/ENCFF330EMX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/e3278079-9397-4e7c-adf8-c2e1806d24ec/ENCFF330EMX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF245AMP fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 1 ENCFF398EZJ 1862024936 Michael Snyder, Stanford 006ad056bee5f56e303b2e41dcb36b6f https://www.encodeproject.org/files/ENCFF245AMP/@@download/ENCFF245AMP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/dfb36257-cac2-4cf1-a40e-c5664870b38a/ENCFF245AMP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF705WCP fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 2 ENCFF733BMQ 1051560738 Michael Snyder, Stanford ed0a291f1c3558d122c72a42336383f5 https://www.encodeproject.org/files/ENCFF705WCP/@@download/ENCFF705WCP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/e53a39c4-1f02-461a-a006-51ef8dd01611/ENCFF705WCP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF629ULU fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 1 6 76 paired-ended 1 ENCFF127WYM 318396428 Michael Snyder, Stanford 81572beac028c2ea9f26ccdf48850bbc https://www.encodeproject.org/files/ENCFF629ULU/@@download/ENCFF629ULU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/da3fb5dd-614c-43d9-8de0-95e15d8a2230/ENCFF629ULU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF931GOA fastq reads ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 1 ENCFF590DAW 2641440177 Michael Snyder, Stanford a1cfc3e0f8622475ad0761a78b76ca9b https://www.encodeproject.org/files/ENCFF931GOA/@@download/ENCFF931GOA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/2053e25a-aff1-4d24-9c5e-6d4875d5b68d/ENCFF931GOA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF305PRP bam alignments ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 2 ENCFF095GXA, ENCFF417FSB, ENCFF590DAW, ENCFF705WCP, ENCFF733BMQ, ENCFF791IPF, ENCFF884HTT, ENCFF931GOA 3891922628 Anshul Kundaje, Stanford 14ddc32c592a4a688d90814e38033404 https://www.encodeproject.org/files/ENCFF305PRP/@@download/ENCFF305PRP.bam GRCh38 released s3://encode-public/2017/04/01/ba4baf64-5697-476b-b8a0-5f0bbe0a9a3e/ENCFF305PRP.bam mismatched file status, experiment not submitted to GEO ENCFF607XLB bam alignments ENCSR649RCV ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5 day DNA False 2017-10-10 GGR 1 ENCFF061PNY, ENCFF097KAV, ENCFF108BMP, ENCFF127WYM, ENCFF160AIC, ENCFF245AMP, ENCFF301DOO, ENCFF330EMX, ENCFF398EZJ, ENCFF629ULU, ENCFF859GMX, ENCFF923RCA 6030071037 Anshul Kundaje, Stanford 83e827cfb84a0e3f75736f64ddc4bfb3 https://www.encodeproject.org/files/ENCFF607XLB/@@download/ENCFF607XLB.bam GRCh38 released s3://encode-public/2017/04/01/f7088066-0ee3-457b-8c55-93df91ba717a/ENCFF607XLB.bam mismatched file status, experiment not submitted to GEO ENCFF893KQZ fastq reads ENCSR370QWN ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 0 ng/mL 0 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 75 paired-ended 1 ENCFF443HVZ 3151178953 Manuel Garber, UMass b4c25ecdcd7c6a5d6ecf0e239098bf7a SRA:SRR5210416 https://www.encodeproject.org/files/ENCFF893KQZ/@@download/ENCFF893KQZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/12/2e83fb0a-75c6-4356-bf37-3bf4279db641/ENCFF893KQZ.fastq.gz unreplicated experiment ENCFF443HVZ fastq reads ENCSR370QWN ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 0 ng/mL 0 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 75 paired-ended 2 ENCFF893KQZ 3143727464 Manuel Garber, UMass 66e9ee98943e14484cd27d9e1c8825b5 SRA:SRR5210416 https://www.encodeproject.org/files/ENCFF443HVZ/@@download/ENCFF443HVZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/12/2cd0215d-ce78-470d-887a-51da9330d637/ENCFF443HVZ.fastq.gz unreplicated experiment ENCFF171VCW fastq reads ENCSR679NRJ ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 1 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 50 paired-ended 1 ENCFF754HLI 1489105856 Manuel Garber, UMass fd7d9e6a9ea093a7918ad98ff26cdf92 SRA:SRR5210432 https://www.encodeproject.org/files/ENCFF171VCW/@@download/ENCFF171VCW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/12/9147ca7b-748a-4c24-ac8b-c3b8fccd0396/ENCFF171VCW.fastq.gz unreplicated experiment ENCFF754HLI fastq reads ENCSR679NRJ ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 1 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 50 paired-ended 2 ENCFF171VCW 1447849852 Manuel Garber, UMass 4c3e7ad7a558b57be94a3f6794b72701 SRA:SRR5210432 https://www.encodeproject.org/files/ENCFF754HLI/@@download/ENCFF754HLI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/12/f955f174-fd7a-4c28-8be0-1db077638c6c/ENCFF754HLI.fastq.gz unreplicated experiment ENCFF482SEV fastq reads ENCSR459AYS ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 2 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 40 paired-ended 1 ENCFF777VDM 3466876920 Manuel Garber, UMass 1b23f61dff57362f548bb37766463483 SRA:SRR5210397 https://www.encodeproject.org/files/ENCFF482SEV/@@download/ENCFF482SEV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/11/d9f343e9-ae32-4872-bd5c-d4e4c3ecc1a8/ENCFF482SEV.fastq.gz unreplicated experiment ENCFF777VDM fastq reads ENCSR459AYS ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 2 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 40 paired-ended 2 ENCFF482SEV 3564674601 Manuel Garber, UMass 0a3a271ea9a6297204439173b2107ae4 SRA:SRR5210397 https://www.encodeproject.org/files/ENCFF777VDM/@@download/ENCFF777VDM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/11/472cab6d-0c7f-4662-89cb-ce0f42b6f227/ENCFF777VDM.fastq.gz unreplicated experiment ENCFF809QSA fastq reads ENCSR589ROM ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 4 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 40 paired-ended 2 ENCFF920RAF 4477940046 Manuel Garber, UMass 832d39d2fe67f2250e694b7c4050dd81 SRA:SRR5210422 https://www.encodeproject.org/files/ENCFF809QSA/@@download/ENCFF809QSA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/11/e6f194ba-52f9-42ff-b04e-d9a93b0be816/ENCFF809QSA.fastq.gz unreplicated experiment ENCFF920RAF fastq reads ENCSR589ROM ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 4 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 40 paired-ended 1 ENCFF809QSA 4385475189 Manuel Garber, UMass 157aa676e83bf342b647ac3b9621ba39 SRA:SRR5210422 https://www.encodeproject.org/files/ENCFF920RAF/@@download/ENCFF920RAF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/11/8fdee243-1cc2-4519-8ee4-6cc3cd97047c/ENCFF920RAF.fastq.gz unreplicated experiment ENCFF609KWV fastq reads ENCSR926TFY ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 4 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 1 ENCFF293HLB 1874833881 Manuel Garber, UMass 6cf0965ca07fec281284eb77f42aae1b SRA:SRR5210449 https://www.encodeproject.org/files/ENCFF609KWV/@@download/ENCFF609KWV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/12/b1fb8c37-2842-4cc3-89d8-f078576d3f4b/ENCFF609KWV.fastq.gz unreplicated experiment ENCFF293HLB fastq reads ENCSR926TFY ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 4 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 2 ENCFF609KWV 1914333634 Manuel Garber, UMass 901269183606c9e0bb23ba1cc1bcb303 SRA:SRR5210449 https://www.encodeproject.org/files/ENCFF293HLB/@@download/ENCFF293HLB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/12/79c9ccc7-88b9-40eb-9b74-15b6a0438a96/ENCFF293HLB.fastq.gz unreplicated experiment ENCFF816JYL fastq reads ENCSR544YXV ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 1 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 75 paired-ended 1 ENCFF501KGG 3059135334 Manuel Garber, UMass 2a383934d07483365a80b903ecb4c48a SRA:SRR5210415 https://www.encodeproject.org/files/ENCFF816JYL/@@download/ENCFF816JYL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/12/697a7842-518c-419c-9170-0c0ed714e5e1/ENCFF816JYL.fastq.gz unreplicated experiment ENCFF501KGG fastq reads ENCSR544YXV ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 1 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 75 paired-ended 2 ENCFF816JYL 3062188002 Manuel Garber, UMass d1e6052ca68fd4ec12a3405f1c0657b3 SRA:SRR5210415 https://www.encodeproject.org/files/ENCFF501KGG/@@download/ENCFF501KGG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/12/40245f43-7194-4a68-ac7a-b46885cc37ac/ENCFF501KGG.fastq.gz unreplicated experiment ENCFF648IID fastq reads ENCSR926GDT ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 4 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 75 paired-ended 1 ENCFF927OET 4514272091 Manuel Garber, UMass 697eafe89c9f8edc1c6a33fb002dd5e6 SRA:SRR5210447 https://www.encodeproject.org/files/ENCFF648IID/@@download/ENCFF648IID.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/12/f95e1ce7-cf64-47c3-8692-bf667e08cc9c/ENCFF648IID.fastq.gz unreplicated experiment ENCFF927OET fastq reads ENCSR926GDT ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 4 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 75 paired-ended 2 ENCFF648IID 4474004763 Manuel Garber, UMass 407b685792bf313554ab4e9cc6205b2d SRA:SRR5210447 https://www.encodeproject.org/files/ENCFF927OET/@@download/ENCFF927OET.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/12/c214fbf7-9b12-4d8e-be4a-4fb06f3337af/ENCFF927OET.fastq.gz unreplicated experiment ENCFF954AIA fastq reads ENCSR156FDX ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 30 minute DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 1 ENCFF039BMZ 1531321974 Manuel Garber, UMass 6df0d43b8443d3ff3996e56324287ae4 SRA:SRR5210387 https://www.encodeproject.org/files/ENCFF954AIA/@@download/ENCFF954AIA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/12/46133e3d-5130-4f6b-9424-521b05449146/ENCFF954AIA.fastq.gz unreplicated experiment ENCFF039BMZ fastq reads ENCSR156FDX ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 30 minute DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 2 ENCFF954AIA 1568408817 Manuel Garber, UMass c85d027a07a1cae30fee168f637b864b SRA:SRR5210387 https://www.encodeproject.org/files/ENCFF039BMZ/@@download/ENCFF039BMZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/12/bc5f4044-c5d7-4c01-b252-d3f1aa36d59b/ENCFF039BMZ.fastq.gz unreplicated experiment ENCFF463PIR fastq reads ENCSR064IHX ATAC-seq CL:0000050 megakaryocyte-erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 48 single-ended 4758872907 Ross Hardison, PennState 8f50f4c5e8d9ef1481ac3b4cffe3847e https://www.encodeproject.org/files/ENCFF463PIR/@@download/ENCFF463PIR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/d300277b-8f48-4fba-bcbe-7f75d6fcc823/ENCFF463PIR.fastq.gz inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF360YBL fastq reads ENCSR064IHX ATAC-seq CL:0000050 megakaryocyte-erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 48 single-ended 4716086216 Ross Hardison, PennState 681b3653b86801927b0afb6747ff7c40 https://www.encodeproject.org/files/ENCFF360YBL/@@download/ENCFF360YBL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/13c71f85-d9eb-4839-9916-7e6ac1253798/ENCFF360YBL.fastq.gz inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF901IMU bam alignments ENCSR064IHX ATAC-seq CL:0000050 megakaryocyte-erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF463PIR 3570298973 Ross Hardison, PennState 79d343d73742d2a254a90e31c9b05eed https://www.encodeproject.org/files/ENCFF901IMU/@@download/ENCFF901IMU.bam mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/046542ee-e51a-4bf0-a80e-862ae392cd10/ENCFF901IMU.bam inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF776PKK bam alignments ENCSR064IHX ATAC-seq CL:0000050 megakaryocyte-erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF360YBL 3429247160 Ross Hardison, PennState 26d936162447efa58c6c4c9c98fc1366 https://www.encodeproject.org/files/ENCFF776PKK/@@download/ENCFF776PKK.bam mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/906d835f-e89e-470a-87b6-7844739fd492/ENCFF776PKK.bam inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF644USW bigWig signal of all reads ENCSR064IHX ATAC-seq CL:0000050 megakaryocyte-erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF901IMU 3431516139 Ross Hardison, PennState 2fcc00d4e311054592e54c1f4772dc65 https://www.encodeproject.org/files/ENCFF644USW/@@download/ENCFF644USW.bigWig mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/937ec240-91a9-4512-b049-4e0382ea4175/ENCFF644USW.bigWig inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF388MNB bigBed bed3+ peaks ENCSR064IHX ATAC-seq CL:0000050 megakaryocyte-erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF901IMU 2234398 Ross Hardison, PennState 843b973387a2905ef260043e10f4e40a https://www.encodeproject.org/files/ENCFF388MNB/@@download/ENCFF388MNB.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/81af9eaa-49d3-450c-9dbb-9311d6c887e7/ENCFF388MNB.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF809OAD bigBed narrowPeak open chromatin regions ENCSR064IHX ATAC-seq CL:0000050 megakaryocyte-erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF901IMU 12376510 Ross Hardison, PennState 59741ff5faa8e4fb7296f86ad76b3187 https://www.encodeproject.org/files/ENCFF809OAD/@@download/ENCFF809OAD.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/1efc7651-9ad2-4aca-a02a-0fdadfdc7900/ENCFF809OAD.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF265UYE bigWig signal of all reads ENCSR064IHX ATAC-seq CL:0000050 megakaryocyte-erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF776PKK 3306953046 Ross Hardison, PennState 567c9ebe44eaa563364ed9d4ab9f16cb https://www.encodeproject.org/files/ENCFF265UYE/@@download/ENCFF265UYE.bigWig mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/1667e6bb-af8f-4a5c-97a7-997112037c9c/ENCFF265UYE.bigWig inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF424JUQ bigBed narrowPeak open chromatin regions ENCSR064IHX ATAC-seq CL:0000050 megakaryocyte-erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF776PKK 8131044 Ross Hardison, PennState 93209101f6b78cb09a9e0feba20f74f3 https://www.encodeproject.org/files/ENCFF424JUQ/@@download/ENCFF424JUQ.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/67ff4148-d55a-4883-b25c-cac9bded7b31/ENCFF424JUQ.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF730FAI bigBed bed3+ peaks ENCSR064IHX ATAC-seq CL:0000050 megakaryocyte-erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF776PKK 2918811 Ross Hardison, PennState c2adab59e2fa30707a2d832dbe18232b https://www.encodeproject.org/files/ENCFF730FAI/@@download/ENCFF730FAI.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/1f0ee0a7-ef94-48e4-bcc7-d973004fedac/ENCFF730FAI.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF213SDI bigBed narrowPeak filtered regions ENCSR064IHX ATAC-seq CL:0000050 megakaryocyte-erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF790DJT, ENCFF809OAD 2933910 Ross Hardison, PennState 8b108c7bc1bd4b56a9865488a36db68c https://www.encodeproject.org/files/ENCFF213SDI/@@download/ENCFF213SDI.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/b9158828-84fe-4e36-b15c-c00a7a455164/ENCFF213SDI.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF681RSX bigBed bed3+ filtered peaks ENCSR064IHX ATAC-seq CL:0000050 megakaryocyte-erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF388MNB, ENCFF790DJT 2188191 Ross Hardison, PennState 5a2bd565ca3fa4093e52d722e64cd0f8 https://www.encodeproject.org/files/ENCFF681RSX/@@download/ENCFF681RSX.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/73035744-95ba-479a-a600-f7627d423699/ENCFF681RSX.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF415JOO bigBed bed3+ filtered peaks ENCSR064IHX ATAC-seq CL:0000050 megakaryocyte-erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF730FAI, ENCFF790DJT 2865802 Ross Hardison, PennState 74d5b6812813391f796ff7199ab1b33c https://www.encodeproject.org/files/ENCFF415JOO/@@download/ENCFF415JOO.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/7e26aa40-dc4a-4890-a25a-146b99303ffe/ENCFF415JOO.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF215AXG bigBed narrowPeak filtered regions ENCSR064IHX ATAC-seq CL:0000050 megakaryocyte-erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF424JUQ, ENCFF790DJT 3039739 Ross Hardison, PennState 5996419bce08eab28697687c5909c854 https://www.encodeproject.org/files/ENCFF215AXG/@@download/ENCFF215AXG.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/d8f2b602-bd1c-41ff-a003-5713aed598a7/ENCFF215AXG.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF593JVB fastq reads ENCSR064IHX ATAC-seq CL:0000050 megakaryocyte-erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 48 single-ended 587116969 Ross Hardison, PennState bec323b026903a29739f45b0c15d5c76 https://www.encodeproject.org/files/ENCFF593JVB/@@download/ENCFF593JVB.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/27/538919d9-8b53-4d2d-9f23-25fe4adbb02d/ENCFF593JVB.fastq.gz inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF994LJW bigWig fold change over control ENCSR064IHX ATAC-seq CL:0000050 megakaryocyte-erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF892LPL 416172901 Anshul Kundaje, Stanford e0802881b9db70ce60eebc9efc6d662c https://www.encodeproject.org/files/ENCFF994LJW/@@download/ENCFF994LJW.bigWig mm10 released s3://encode-public/2017/05/11/68969c96-bf50-4c04-aab0-e6261e798019/ENCFF994LJW.bigWig inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF892LPL bam alignments ENCSR064IHX ATAC-seq CL:0000050 megakaryocyte-erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF360YBL 1657841393 Anshul Kundaje, Stanford a4380eb7446e14d30a99768889e686f0 https://www.encodeproject.org/files/ENCFF892LPL/@@download/ENCFF892LPL.bam mm10 released s3://encode-public/2017/05/11/6578dae2-b846-4733-b888-b5998659466e/ENCFF892LPL.bam inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF831CZO bigWig signal p-value ENCSR064IHX ATAC-seq CL:0000050 megakaryocyte-erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF961NKZ 431078859 Anshul Kundaje, Stanford 6b4964a98adf3af8df92d559fd55c886 https://www.encodeproject.org/files/ENCFF831CZO/@@download/ENCFF831CZO.bigWig mm10 released s3://encode-public/2017/05/11/96e6e4cb-8f26-49c0-8d31-9d8fddf5521b/ENCFF831CZO.bigWig inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF691ETS bigWig signal p-value ENCSR064IHX ATAC-seq CL:0000050 megakaryocyte-erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF892LPL 415218485 Anshul Kundaje, Stanford 8c0b4e3ea71fa0a521f2010509469b29 https://www.encodeproject.org/files/ENCFF691ETS/@@download/ENCFF691ETS.bigWig mm10 released s3://encode-public/2017/05/11/8622ae3f-3162-4828-b8d7-e5f024c47ec6/ENCFF691ETS.bigWig inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF700IKY bigWig fold change over control ENCSR064IHX ATAC-seq CL:0000050 megakaryocyte-erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF961NKZ 458611283 Anshul Kundaje, Stanford df2fb762691860eb9fbe15613c4bc7d0 https://www.encodeproject.org/files/ENCFF700IKY/@@download/ENCFF700IKY.bigWig mm10 released s3://encode-public/2017/05/11/ae58e443-16fa-4287-90ba-4ebeda6c85b5/ENCFF700IKY.bigWig inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF961NKZ bam alignments ENCSR064IHX ATAC-seq CL:0000050 megakaryocyte-erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF463PIR, ENCFF593JVB 1791481490 Anshul Kundaje, Stanford 3c000380d562bb3e2b4d402c76bafa3d https://www.encodeproject.org/files/ENCFF961NKZ/@@download/ENCFF961NKZ.bam mm10 released s3://encode-public/2017/05/11/2d6a53cb-e093-45b7-81df-85694563f05f/ENCFF961NKZ.bam inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF066SZX bed narrowPeak replicated peaks ENCSR064IHX ATAC-seq CL:0000050 megakaryocyte-erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1, 2 ENCFF830ANG, ENCFF956VEV 7103117 Anshul Kundaje, Stanford 2944e92017bab7f580753e67e8727e8f https://www.encodeproject.org/files/ENCFF066SZX/@@download/ENCFF066SZX.bed.gz mm10 archived s3://encode-public/2017/05/11/25d19f17-d021-41eb-aa29-b6bfc8f35de8/ENCFF066SZX.bed.gz inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF528EDX bigBed narrowPeak replicated peaks ENCSR064IHX ATAC-seq CL:0000050 megakaryocyte-erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1, 2 ENCFF066SZX 15594841 Anshul Kundaje, Stanford c82b3b526ee89c86e19f21fa1a76882b https://www.encodeproject.org/files/ENCFF528EDX/@@download/ENCFF528EDX.bigBed mm10 archived s3://encode-public/2017/05/11/70939c91-ef98-4d9a-9c73-9dc92571dbba/ENCFF528EDX.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF757AOM fastq reads ENCSR914PYX ATAC-seq CL:0000049 common myeloid progenitor primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 48 single-ended 3498895980 Ross Hardison, PennState 8e29648fda16d1020e766225f1740c2b https://www.encodeproject.org/files/ENCFF757AOM/@@download/ENCFF757AOM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/9b076e06-a661-4da4-b518-8c216df996c9/ENCFF757AOM.fastq.gz inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF692NRE fastq reads ENCSR914PYX ATAC-seq CL:0000049 common myeloid progenitor primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 48 single-ended 3840666325 Ross Hardison, PennState f2e29c4417f620042fc5f1d6e6f6edd7 https://www.encodeproject.org/files/ENCFF692NRE/@@download/ENCFF692NRE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/1faeef0b-c739-47ef-9a91-cd73a17e1a1e/ENCFF692NRE.fastq.gz inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF711QAL bam alignments ENCSR914PYX ATAC-seq CL:0000049 common myeloid progenitor primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF692NRE 2781416749 Ross Hardison, PennState 1c457fa3074bd2a43080b53ced071a10 https://www.encodeproject.org/files/ENCFF711QAL/@@download/ENCFF711QAL.bam mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/28/d010926b-1e1a-45d7-896e-ae2f1f393144/ENCFF711QAL.bam inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF357GGO bigBed narrowPeak open chromatin regions ENCSR914PYX ATAC-seq CL:0000049 common myeloid progenitor primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF711QAL 7179197 Ross Hardison, PennState 5289ac1dbcbad9be9d9c6784910762c5 https://www.encodeproject.org/files/ENCFF357GGO/@@download/ENCFF357GGO.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/28/22d598a8-3f4b-4a5e-839b-832b9e707bc1/ENCFF357GGO.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF605ETD bigWig signal of all reads ENCSR914PYX ATAC-seq CL:0000049 common myeloid progenitor primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF711QAL 3338142387 Ross Hardison, PennState 6070b2e60e764cfeae3aa905521aaa51 https://www.encodeproject.org/files/ENCFF605ETD/@@download/ENCFF605ETD.bigWig mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/28/fb385cd1-f9a8-4e6f-8f28-f60015360bb2/ENCFF605ETD.bigWig inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF647XIG bigBed bed3+ peaks ENCSR914PYX ATAC-seq CL:0000049 common myeloid progenitor primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF711QAL 3396274 Ross Hardison, PennState e7f5a0ccb48dfd3eedcecae81eeded2b https://www.encodeproject.org/files/ENCFF647XIG/@@download/ENCFF647XIG.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/28/230f7a36-b52c-4cac-9e01-21dc1f00969c/ENCFF647XIG.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF620WGW bam alignments ENCSR914PYX ATAC-seq CL:0000049 common myeloid progenitor primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF757AOM 2491087133 Ross Hardison, PennState 1c3db14f86f6eb57274b5cc0bd780478 https://www.encodeproject.org/files/ENCFF620WGW/@@download/ENCFF620WGW.bam mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/28/443f18b7-6fe4-4338-9f40-b49f05cca042/ENCFF620WGW.bam inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF977KCO bigWig signal of all reads ENCSR914PYX ATAC-seq CL:0000049 common myeloid progenitor primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF620WGW 3347026690 Ross Hardison, PennState c526ff5f8bb031b9169e42c21b95e441 https://www.encodeproject.org/files/ENCFF977KCO/@@download/ENCFF977KCO.bigWig mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/32b0aa2c-456f-4f15-bf98-70d1c0cc0b81/ENCFF977KCO.bigWig inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF908DVH bigBed bed3+ peaks ENCSR914PYX ATAC-seq CL:0000049 common myeloid progenitor primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF620WGW 3489552 Ross Hardison, PennState 3d02798d8c076d2f8c296588e5ef6e22 https://www.encodeproject.org/files/ENCFF908DVH/@@download/ENCFF908DVH.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/5cf8d26b-75e5-471a-b568-bfcbf447f594/ENCFF908DVH.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF830LPV bigBed narrowPeak open chromatin regions ENCSR914PYX ATAC-seq CL:0000049 common myeloid progenitor primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF620WGW 6979622 Ross Hardison, PennState a993baae5ac2de9493d778c7492c196d https://www.encodeproject.org/files/ENCFF830LPV/@@download/ENCFF830LPV.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/0ea2a012-f701-4dbc-a105-429f8416d1f4/ENCFF830LPV.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF832UUS bigBed bed3+ filtered peaks ENCSR914PYX ATAC-seq CL:0000049 common myeloid progenitor primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF647XIG, ENCFF790DJT 3346590 Ross Hardison, PennState b90efa1437a509a5696bc460f7ebd510 https://www.encodeproject.org/files/ENCFF832UUS/@@download/ENCFF832UUS.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/3278d90d-1acf-441f-89ad-fe547837b670/ENCFF832UUS.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF413IPF bigBed narrowPeak filtered regions ENCSR914PYX ATAC-seq CL:0000049 common myeloid progenitor primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF357GGO, ENCFF790DJT 3212181 Ross Hardison, PennState fc9ed15758bb654c2e470be5e43dfdd8 https://www.encodeproject.org/files/ENCFF413IPF/@@download/ENCFF413IPF.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/7b822c1a-d05f-4c2d-aeb7-4071856d67b7/ENCFF413IPF.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF343PTQ bigBed bed3+ filtered peaks ENCSR914PYX ATAC-seq CL:0000049 common myeloid progenitor primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF790DJT, ENCFF908DVH 3437928 Ross Hardison, PennState 82d33a7fced56fee938be18c5b92f6fb https://www.encodeproject.org/files/ENCFF343PTQ/@@download/ENCFF343PTQ.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/0cb87082-2453-4348-b8ee-6fa9c2153326/ENCFF343PTQ.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF894IUB bigBed narrowPeak filtered regions ENCSR914PYX ATAC-seq CL:0000049 common myeloid progenitor primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF790DJT, ENCFF830LPV 3207533 Ross Hardison, PennState a4b8df2d679d11a4edc1b4b77aacc8f5 https://www.encodeproject.org/files/ENCFF894IUB/@@download/ENCFF894IUB.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/9582015c-e68a-4a6e-9d9d-995c0754b659/ENCFF894IUB.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF731TRW fastq reads ENCSR914PYX ATAC-seq CL:0000049 common myeloid progenitor primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 48 single-ended 1942375776 Ross Hardison, PennState f83f82295400f2a4b05954850a952e2e https://www.encodeproject.org/files/ENCFF731TRW/@@download/ENCFF731TRW.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/27/78f956a4-be1b-4954-b8b0-68b5d372edf4/ENCFF731TRW.fastq.gz inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF192KFZ bigWig signal p-value ENCSR914PYX ATAC-seq CL:0000049 common myeloid progenitor primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF955MIX 213202569 Anshul Kundaje, Stanford e09c491527cae8de2cb51e177ea30432 https://www.encodeproject.org/files/ENCFF192KFZ/@@download/ENCFF192KFZ.bigWig mm10 released s3://encode-public/2017/05/11/bcb11f1b-2f21-473e-8af6-52a55affc447/ENCFF192KFZ.bigWig inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF897JHD bigWig signal p-value ENCSR914PYX ATAC-seq CL:0000049 common myeloid progenitor primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF478FHR 335084403 Anshul Kundaje, Stanford 93da92b118fb97679e6b57fccafb6db0 https://www.encodeproject.org/files/ENCFF897JHD/@@download/ENCFF897JHD.bigWig mm10 released s3://encode-public/2017/05/11/47c39984-47ff-49fb-93e2-5c1725b50735/ENCFF897JHD.bigWig inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF819UOE bigWig fold change over control ENCSR914PYX ATAC-seq CL:0000049 common myeloid progenitor primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF955MIX 233627370 Anshul Kundaje, Stanford a67fcd0c0ffdc71837cb268f39d74300 https://www.encodeproject.org/files/ENCFF819UOE/@@download/ENCFF819UOE.bigWig mm10 released s3://encode-public/2017/05/11/81e21c5c-45e1-406e-a63f-9f41270d28df/ENCFF819UOE.bigWig inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF955MIX bam alignments ENCSR914PYX ATAC-seq CL:0000049 common myeloid progenitor primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF757AOM 1144951732 Anshul Kundaje, Stanford 73ff3e0dd3251a098cd59d86a00b6daf https://www.encodeproject.org/files/ENCFF955MIX/@@download/ENCFF955MIX.bam mm10 released s3://encode-public/2017/05/11/b4e2ecd3-6869-4d47-93fb-b9e8b5efe82a/ENCFF955MIX.bam inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF478FHR bam alignments ENCSR914PYX ATAC-seq CL:0000049 common myeloid progenitor primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF692NRE, ENCFF731TRW 1647746665 Anshul Kundaje, Stanford 4fb86eca37922cf7a424a38530a0863a https://www.encodeproject.org/files/ENCFF478FHR/@@download/ENCFF478FHR.bam mm10 released s3://encode-public/2017/05/11/815e9fb3-7f6d-42af-a75c-2e66b5eb3329/ENCFF478FHR.bam inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF705VCO bigWig fold change over control ENCSR914PYX ATAC-seq CL:0000049 common myeloid progenitor primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF478FHR 396496331 Anshul Kundaje, Stanford b5a0647ff61594eb626f12888961e6c2 https://www.encodeproject.org/files/ENCFF705VCO/@@download/ENCFF705VCO.bigWig mm10 released s3://encode-public/2017/05/11/162b69ed-8e30-4708-8e35-1e24b7581c82/ENCFF705VCO.bigWig inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF380YFS bed narrowPeak replicated peaks ENCSR914PYX ATAC-seq CL:0000049 common myeloid progenitor primary cell Mus musculus DNA False 2016-03-30 ENCODE 1, 2 ENCFF335WUZ, ENCFF908LDG 7888850 Anshul Kundaje, Stanford 731ae8dce953e5fc955fc2f857902456 https://www.encodeproject.org/files/ENCFF380YFS/@@download/ENCFF380YFS.bed.gz mm10 archived s3://encode-public/2017/05/11/8c578630-b7d1-4a0a-9cd4-7d41cb1598c1/ENCFF380YFS.bed.gz inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF604EQL bigBed narrowPeak replicated peaks ENCSR914PYX ATAC-seq CL:0000049 common myeloid progenitor primary cell Mus musculus DNA False 2016-03-30 ENCODE 1, 2 ENCFF380YFS 17292595 Anshul Kundaje, Stanford f4fe7f191efc9cb85b75e69da6188a22 https://www.encodeproject.org/files/ENCFF604EQL/@@download/ENCFF604EQL.bigBed mm10 archived s3://encode-public/2017/05/11/406f9b7b-68e3-4e48-8ab8-02723e73ee1e/ENCFF604EQL.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF217JOA fastq reads ENCSR453AWR ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 48 single-ended 3235500981 Ross Hardison, PennState aaa76a4bce603a69821c86b796201c27 https://www.encodeproject.org/files/ENCFF217JOA/@@download/ENCFF217JOA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/8cd8c01d-1cec-4e18-b4ad-9256eb393d50/ENCFF217JOA.fastq.gz inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF621CAV fastq reads ENCSR453AWR ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 48 single-ended 3861474192 Ross Hardison, PennState 061cceb2747d349c7fb43425a7f59350 https://www.encodeproject.org/files/ENCFF621CAV/@@download/ENCFF621CAV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/db068433-6770-42b7-b6ba-a5238dc59cfa/ENCFF621CAV.fastq.gz inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF250YAL bam alignments ENCSR453AWR ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF621CAV 2753850870 Ross Hardison, PennState 47c9aaf2e54a496cb7889afc05f36796 https://www.encodeproject.org/files/ENCFF250YAL/@@download/ENCFF250YAL.bam mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/15/8c40d78c-9957-480e-8bb2-f8a32280b8b9/ENCFF250YAL.bam inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF079QTM bigWig signal of all reads ENCSR453AWR ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF250YAL 3771738978 Ross Hardison, PennState e69692c936f922a02f7848d1630abc79 https://www.encodeproject.org/files/ENCFF079QTM/@@download/ENCFF079QTM.bigWig mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/15/d0d874ec-2b9e-4111-b7f5-4911c3da8318/ENCFF079QTM.bigWig inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF301DHG bigBed bed3+ peaks ENCSR453AWR ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF250YAL 2037622 Ross Hardison, PennState d9319a600d8f8bbeeac22a27b39befdb https://www.encodeproject.org/files/ENCFF301DHG/@@download/ENCFF301DHG.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/15/76236467-0144-4801-a12f-593b2f6f432c/ENCFF301DHG.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF662DYG bigBed bed3+ filtered peaks ENCSR453AWR ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF301DHG, ENCFF790DJT 1996640 Ross Hardison, PennState 0f9a29147a56da499c55932692659d52 https://www.encodeproject.org/files/ENCFF662DYG/@@download/ENCFF662DYG.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/22/6e566c1f-fddb-4764-a901-0d2e765243dd/ENCFF662DYG.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF648KJW bigBed narrowPeak filtered regions ENCSR453AWR ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF038TUF, ENCFF790DJT 2646917 Ross Hardison, PennState 486d1220b99cb7114039df64067e8e69 https://www.encodeproject.org/files/ENCFF648KJW/@@download/ENCFF648KJW.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/22/b591a947-2198-41e4-b421-78bbca817caf/ENCFF648KJW.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF038TUF bigBed narrowPeak open chromatin regions ENCSR453AWR ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF250YAL 15102548 Ross Hardison, PennState fb66dc1fae6ef1f328d5c4e237ab6c7b https://www.encodeproject.org/files/ENCFF038TUF/@@download/ENCFF038TUF.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/22/8f41c7f1-0828-4ca7-be27-a990dac8d033/ENCFF038TUF.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF594LDF bigWig signal of all reads ENCSR453AWR ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF958EPJ 3500417135 Ross Hardison, PennState 8e997fea40285164360869a878b396d9 https://www.encodeproject.org/files/ENCFF594LDF/@@download/ENCFF594LDF.bigWig mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/24/4af4fc35-4735-4950-9eec-0844dc832cca/ENCFF594LDF.bigWig inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF552UXZ bigBed bed3+ peaks ENCSR453AWR ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF958EPJ 1887266 Ross Hardison, PennState af660cca41f0d6b980d864521fe56767 https://www.encodeproject.org/files/ENCFF552UXZ/@@download/ENCFF552UXZ.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/24/3064922e-d0aa-4d75-9e7c-5bad412924a0/ENCFF552UXZ.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF480LTE bigBed narrowPeak filtered regions ENCSR453AWR ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF420UEO, ENCFF790DJT 2613496 Ross Hardison, PennState ada02cd6e785030decab8349b33d2f39 https://www.encodeproject.org/files/ENCFF480LTE/@@download/ENCFF480LTE.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/24/0c18a146-09d6-47f8-af98-18a0fa0da6be/ENCFF480LTE.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF958EPJ bam alignments ENCSR453AWR ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF217JOA 2224398197 Ross Hardison, PennState 4568f39d42aa0d5df46d22edf337a392 https://www.encodeproject.org/files/ENCFF958EPJ/@@download/ENCFF958EPJ.bam mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/24/26981f53-63b3-402b-ae35-ea3a3fd77449/ENCFF958EPJ.bam inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF420UEO bigBed narrowPeak open chromatin regions ENCSR453AWR ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF958EPJ 6267435 Ross Hardison, PennState 9fb75c89926ec456bcb63c3b3c3d2046 https://www.encodeproject.org/files/ENCFF420UEO/@@download/ENCFF420UEO.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/24/7c4cd31d-160a-4bf3-bec4-53a2b632b8ad/ENCFF420UEO.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF255IVU bigBed bed3+ filtered peaks ENCSR453AWR ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF552UXZ, ENCFF790DJT 1836453 Ross Hardison, PennState c4507139d738bb971b0032dd3df52676 https://www.encodeproject.org/files/ENCFF255IVU/@@download/ENCFF255IVU.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/24/91a9fa07-59c8-42bd-b54b-80e4d07ca2e3/ENCFF255IVU.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF125NOO fastq reads ENCSR453AWR ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 48 single-ended 5275708591 Ross Hardison, PennState 91c11f11d9e316850c3611e5bbf863ef https://www.encodeproject.org/files/ENCFF125NOO/@@download/ENCFF125NOO.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/27/12c5b560-fb88-4186-9d1b-b9433ea78b91/ENCFF125NOO.fastq.gz inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF193HSD bigWig signal p-value ENCSR453AWR ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF680ZRI 113064181 Anshul Kundaje, Stanford 5fd4d12fec72df52056e2853c295271c https://www.encodeproject.org/files/ENCFF193HSD/@@download/ENCFF193HSD.bigWig mm10 released s3://encode-public/2017/05/11/388e33d6-8e82-4e60-bffb-6e82a1a5cb16/ENCFF193HSD.bigWig inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF351DEI bigWig signal p-value ENCSR453AWR ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF202OJI 209131131 Anshul Kundaje, Stanford a337975e3940b8c532595e153d849d77 https://www.encodeproject.org/files/ENCFF351DEI/@@download/ENCFF351DEI.bigWig mm10 released s3://encode-public/2017/05/11/375df4df-ac30-4227-8378-1a5a10384a24/ENCFF351DEI.bigWig inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF680ZRI bam alignments ENCSR453AWR ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF217JOA 800606203 Anshul Kundaje, Stanford 3d3f878f67c5d1ab665480e099be63b3 https://www.encodeproject.org/files/ENCFF680ZRI/@@download/ENCFF680ZRI.bam mm10 released s3://encode-public/2017/05/11/2f3e1cd2-93ff-4fdd-ac1f-fe269e9f5d03/ENCFF680ZRI.bam inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF202OJI bam alignments ENCSR453AWR ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF125NOO, ENCFF621CAV 1014631988 Anshul Kundaje, Stanford cdd9b3b66565df1c024cbdf24a4b991c https://www.encodeproject.org/files/ENCFF202OJI/@@download/ENCFF202OJI.bam mm10 released s3://encode-public/2017/05/11/0b937ff3-f220-4e05-8564-7a88add887bc/ENCFF202OJI.bam inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF102EHE bigWig fold change over control ENCSR453AWR ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF680ZRI 166684785 Anshul Kundaje, Stanford e22d8bad8d06c18bad033c8f18489482 https://www.encodeproject.org/files/ENCFF102EHE/@@download/ENCFF102EHE.bigWig mm10 released s3://encode-public/2017/05/11/86ce9946-0ee3-4cd6-bbfd-8a2de8897611/ENCFF102EHE.bigWig inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF564GWQ bigWig fold change over control ENCSR453AWR ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF202OJI 226736234 Anshul Kundaje, Stanford 71c44da09f2300ed2a2f9ac92b799165 https://www.encodeproject.org/files/ENCFF564GWQ/@@download/ENCFF564GWQ.bigWig mm10 released s3://encode-public/2017/05/11/12367923-80f7-4be2-a2de-8ac51540fe6a/ENCFF564GWQ.bigWig inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF190DGJ bed narrowPeak replicated peaks ENCSR453AWR ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1, 2 ENCFF732OVB, ENCFF831CWI 6029053 Anshul Kundaje, Stanford 8daf794ce026e79ee9fb0c78b1692dad https://www.encodeproject.org/files/ENCFF190DGJ/@@download/ENCFF190DGJ.bed.gz mm10 archived s3://encode-public/2017/05/11/c7ea00fa-ee8f-4e2b-a67e-6f6777dd18fb/ENCFF190DGJ.bed.gz inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF850ODF bigBed narrowPeak replicated peaks ENCSR453AWR ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1, 2 ENCFF190DGJ 12292844 Anshul Kundaje, Stanford da721aaa5612446addc90b94159bf457 https://www.encodeproject.org/files/ENCFF850ODF/@@download/ENCFF850ODF.bigBed mm10 archived s3://encode-public/2017/05/11/6746e061-c7a7-4e96-b556-3669efc4d059/ENCFF850ODF.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF525LKP fastq reads ENCSR901IEQ ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 4 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 50 paired-ended 1 ENCFF272DPK 1636389367 Manuel Garber, UMass b8e9b1c13e1a5efd4343fee0688392f8 SRA:SRR5210437 https://www.encodeproject.org/files/ENCFF525LKP/@@download/ENCFF525LKP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/12/09aae47e-c140-4e99-b8c2-0776f398281d/ENCFF525LKP.fastq.gz unreplicated experiment ENCFF272DPK fastq reads ENCSR901IEQ ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 4 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 50 paired-ended 2 ENCFF525LKP 1599945479 Manuel Garber, UMass 7db271c108a40a34bc08ca9cdf9104c9 SRA:SRR5210437 https://www.encodeproject.org/files/ENCFF272DPK/@@download/ENCFF272DPK.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/12/3fc9bf7b-b5f3-4353-b5ea-9affeb22aab9/ENCFF272DPK.fastq.gz unreplicated experiment ENCFF395GJQ fastq reads ENCSR329XFZ ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 30 minute DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 2 ENCFF543XVG 1599644013 Manuel Garber, UMass 2ce40ed9dd1eeab1990a803e0a15c925 SRA:SRR5210408 https://www.encodeproject.org/files/ENCFF395GJQ/@@download/ENCFF395GJQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/410a9ae0-b049-4346-9afa-9bbef9e833c6/ENCFF395GJQ.fastq.gz unreplicated experiment ENCFF543XVG fastq reads ENCSR329XFZ ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 30 minute DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 1 ENCFF395GJQ 1546569522 Manuel Garber, UMass 21286dfe62d5775732baa51b78dc407f SRA:SRR5210408 https://www.encodeproject.org/files/ENCFF543XVG/@@download/ENCFF543XVG.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/1e9f3a6d-422f-4f04-a80d-5bd515ffd0fe/ENCFF543XVG.fastq.gz unreplicated experiment ENCFF864WLQ fastq reads ENCSR605EGR ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 30 minute DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 40 paired-ended 1 ENCFF811EZO 2889603570 Manuel Garber, UMass 930bcd3879506246144a8cb98d960e0a SRA:SRR5210431 https://www.encodeproject.org/files/ENCFF864WLQ/@@download/ENCFF864WLQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/11/8fba8077-0604-4a22-bf66-5e06a263dc8e/ENCFF864WLQ.fastq.gz unreplicated experiment ENCFF811EZO fastq reads ENCSR605EGR ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 30 minute DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 40 paired-ended 2 ENCFF864WLQ 2949115036 Manuel Garber, UMass 0796839849f2e453916bde428d17d608 SRA:SRR5210431 https://www.encodeproject.org/files/ENCFF811EZO/@@download/ENCFF811EZO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/11/455cd9fe-d21e-41de-8cdf-0e0723b97b20/ENCFF811EZO.fastq.gz unreplicated experiment ENCFF351SMA fastq reads ENCSR290AUK ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 4 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 1 ENCFF748DPF 1193912820 Manuel Garber, UMass cd8136a15747210d61be96f1447114d6 SRA:SRR5210409 https://www.encodeproject.org/files/ENCFF351SMA/@@download/ENCFF351SMA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/11/a41f16ca-3b0a-494b-a053-5da6ac1b2ffd/ENCFF351SMA.fastq.gz unreplicated experiment ENCFF748DPF fastq reads ENCSR290AUK ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 4 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 2 ENCFF351SMA 1238582566 Manuel Garber, UMass 425680a62666c57f6ed9383eeaba5262 SRA:SRR5210409 https://www.encodeproject.org/files/ENCFF748DPF/@@download/ENCFF748DPF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/11/3116f8e3-846e-4ce7-befc-6b3aba448623/ENCFF748DPF.fastq.gz unreplicated experiment ENCFF688ONY fastq reads ENCSR940QJU ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 0 ng/mL 0 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 50 paired-ended 1 ENCFF195YXP 733489437 Manuel Garber, UMass ddbd3ed3694cc1f6772cfb01f3cfa924 SRA:SRR5210450 https://www.encodeproject.org/files/ENCFF688ONY/@@download/ENCFF688ONY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/12/8698e2f7-bc4b-473c-91f8-54c15e9660a8/ENCFF688ONY.fastq.gz unreplicated experiment ENCFF195YXP fastq reads ENCSR940QJU ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 0 ng/mL 0 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 50 paired-ended 2 ENCFF688ONY 709326247 Manuel Garber, UMass 290fdc961daec49b9fe0d80b274012b8 SRA:SRR5210450 https://www.encodeproject.org/files/ENCFF195YXP/@@download/ENCFF195YXP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/12/c7cad049-0fa5-43df-8b29-e9d80a07e01f/ENCFF195YXP.fastq.gz unreplicated experiment ENCFF915LFI fastq reads ENCSR204FCV ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 0 ng/mL 0 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 2 ENCFF760BUN 1570370287 Manuel Garber, UMass a65753362752a1237491d78926e7193a SRA:SRR5210390 https://www.encodeproject.org/files/ENCFF915LFI/@@download/ENCFF915LFI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/12/b35170f8-5c85-4312-a75e-78c0a16e6b72/ENCFF915LFI.fastq.gz unreplicated experiment ENCFF760BUN fastq reads ENCSR204FCV ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 0 ng/mL 0 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 1 ENCFF915LFI 1534649629 Manuel Garber, UMass dd07ee317c4cdc87a62e9363a23c2a97 SRA:SRR5210390 https://www.encodeproject.org/files/ENCFF760BUN/@@download/ENCFF760BUN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/12/e3fdd96e-5358-4f6f-b441-fad99fa8fc4b/ENCFF760BUN.fastq.gz unreplicated experiment ENCFF173INV fastq reads ENCSR131CHJ ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 2 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 1 ENCFF322IZC 1556609280 Manuel Garber, UMass bf2fb74904fc32fe7cc9e137bb5159ff SRA:SRR5210386 https://www.encodeproject.org/files/ENCFF173INV/@@download/ENCFF173INV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/12/c6e1ba35-f57d-4d2b-8ce6-729e91f2a164/ENCFF173INV.fastq.gz unreplicated experiment ENCFF322IZC fastq reads ENCSR131CHJ ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 2 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 2 ENCFF173INV 1606994224 Manuel Garber, UMass 05509816cd3e05120758a733f8d53073 SRA:SRR5210386 https://www.encodeproject.org/files/ENCFF322IZC/@@download/ENCFF322IZC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/12/7153833b-e9bb-43f6-9b49-9b86dcf07951/ENCFF322IZC.fastq.gz unreplicated experiment ENCFF409BRJ fastq reads ENCSR535NOD ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 2 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 75 paired-ended 2 ENCFF636ZQV 3988059490 Manuel Garber, UMass 599a429ca18e57a591b0c211a1d5222c SRA:SRR5210410 https://www.encodeproject.org/files/ENCFF409BRJ/@@download/ENCFF409BRJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/12/40f1bec1-4553-435d-8a34-aec24d4e17c1/ENCFF409BRJ.fastq.gz unreplicated experiment ENCFF636ZQV fastq reads ENCSR535NOD ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 2 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 75 paired-ended 1 ENCFF409BRJ 3944273464 Manuel Garber, UMass 355913b6713804fb9ec497a3f6efa324 SRA:SRR5210410 https://www.encodeproject.org/files/ENCFF636ZQV/@@download/ENCFF636ZQV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/12/2890057d-6fc9-42c3-ac85-df52e6448279/ENCFF636ZQV.fastq.gz unreplicated experiment ENCFF395EDU fastq reads ENCSR023QZX ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF100YMT 1549863236 Bing Ren, UCSD 8cf7e2c78fe47cd873243577fb72a216 https://www.encodeproject.org/files/ENCFF395EDU/@@download/ENCFF395EDU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/53d392d1-637b-441f-ae30-b2b92a724008/ENCFF395EDU.fastq.gz experiment not submitted to GEO ENCFF117TPW fastq reads ENCSR023QZX ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF340WOK 1471210006 Bing Ren, UCSD e29dd5c16efcc85fafb80a9c7b64fc57 https://www.encodeproject.org/files/ENCFF117TPW/@@download/ENCFF117TPW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/3e69b335-96aa-4b33-bced-963f7545c9b1/ENCFF117TPW.fastq.gz experiment not submitted to GEO ENCFF100YMT fastq reads ENCSR023QZX ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF395EDU 1705555673 Bing Ren, UCSD 1a8859926ee8adbdb5e01e6dccdc9d3f https://www.encodeproject.org/files/ENCFF100YMT/@@download/ENCFF100YMT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/f9e4a538-fa97-40dd-b941-59fe39d9a87a/ENCFF100YMT.fastq.gz experiment not submitted to GEO ENCFF340WOK fastq reads ENCSR023QZX ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF117TPW 1323312045 Bing Ren, UCSD 1b1d00fe10560694e1c45d47b1339d03 https://www.encodeproject.org/files/ENCFF340WOK/@@download/ENCFF340WOK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/9b94c90e-e213-4941-b637-e22f0b2029c0/ENCFF340WOK.fastq.gz experiment not submitted to GEO ENCFF477SZP bam alignments ENCSR023QZX ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF100YMT, ENCFF395EDU 3075325653 Anshul Kundaje, Stanford 7ccf12e464e084146f35b7fc0ef20347 https://www.encodeproject.org/files/ENCFF477SZP/@@download/ENCFF477SZP.bam mm10 released s3://encode-public/2017/04/25/30bc2883-34a2-4181-8f37-2318d38af0dc/ENCFF477SZP.bam experiment not submitted to GEO ENCFF036RNM bam alignments ENCSR023QZX ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF117TPW, ENCFF340WOK 2792394720 Anshul Kundaje, Stanford d8bbef5ffb288296f0bae860427c15b0 https://www.encodeproject.org/files/ENCFF036RNM/@@download/ENCFF036RNM.bam mm10 released s3://encode-public/2017/04/25/4217c05c-ffb1-4a68-9dec-2e251a42a379/ENCFF036RNM.bam experiment not submitted to GEO ENCFF015HCS bigWig signal p-value ENCSR023QZX ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF036RNM 622280927 Anshul Kundaje, Stanford 6f00027fdeb18034bc14757e390beda0 https://www.encodeproject.org/files/ENCFF015HCS/@@download/ENCFF015HCS.bigWig mm10 released s3://encode-public/2017/04/25/fbcf0a66-6e34-4634-8725-a77920d71b48/ENCFF015HCS.bigWig experiment not submitted to GEO ENCFF661PFM bigWig signal p-value ENCSR023QZX ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF477SZP 521235846 Anshul Kundaje, Stanford 3e6111dbbcba271ebbcbf599c6a992b3 https://www.encodeproject.org/files/ENCFF661PFM/@@download/ENCFF661PFM.bigWig mm10 released s3://encode-public/2017/04/25/10b207e4-332e-4102-a165-7820ae40e06f/ENCFF661PFM.bigWig experiment not submitted to GEO ENCFF314AXY bigWig fold change over control ENCSR023QZX ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF477SZP 729339275 Anshul Kundaje, Stanford fd1dd4b6d81884244cbd89e510dfc5dc https://www.encodeproject.org/files/ENCFF314AXY/@@download/ENCFF314AXY.bigWig mm10 released s3://encode-public/2017/04/26/d6baac07-d6f6-4f2f-a370-d46ac7844f97/ENCFF314AXY.bigWig experiment not submitted to GEO ENCFF446XWP bigWig fold change over control ENCSR023QZX ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF036RNM 653884217 Anshul Kundaje, Stanford 85e59018bdba950719a1fc5e9b26ec72 https://www.encodeproject.org/files/ENCFF446XWP/@@download/ENCFF446XWP.bigWig mm10 released s3://encode-public/2017/04/26/bf4dca6a-9afd-4ec1-aeb6-429a8aa480ce/ENCFF446XWP.bigWig experiment not submitted to GEO ENCFF138HKP fastq reads ENCSR548QCP ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF565VHZ 5678959108 Michael Snyder, Stanford 487fa54ae6bf19e5251b363d73dec54c https://www.encodeproject.org/files/ENCFF138HKP/@@download/ENCFF138HKP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/0af4466d-5f85-42dc-a686-dfa250baf5a1/ENCFF138HKP.fastq.gz experiment not submitted to GEO ENCFF565VHZ fastq reads ENCSR548QCP ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF138HKP 5557180504 Michael Snyder, Stanford 3eb3d5424ed9397857bb37d0fc2bf8a1 https://www.encodeproject.org/files/ENCFF565VHZ/@@download/ENCFF565VHZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/3ddbc587-8f6d-469d-bd37-4611e0cbd0c4/ENCFF565VHZ.fastq.gz experiment not submitted to GEO ENCFF708JOG bigWig signal p-value ENCSR548QCP ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF482HAC 1563955436 Anshul Kundaje, Stanford 9238466c441d636e0916d6a7eddbc7f2 https://www.encodeproject.org/files/ENCFF708JOG/@@download/ENCFF708JOG.bigWig GRCh38 released s3://encode-public/2016/12/22/06d1ae70-d3b2-4d6a-ba25-6a6b6dce7be7/ENCFF708JOG.bigWig experiment not submitted to GEO ENCFF482HAC bam alignments ENCSR548QCP ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF138HKP, ENCFF565VHZ 6914098757 Anshul Kundaje, Stanford d4f7475b0ad3a206602bd9604c21c778 https://www.encodeproject.org/files/ENCFF482HAC/@@download/ENCFF482HAC.bam GRCh38 released s3://encode-public/2016/12/22/4fbfffed-e79f-4583-b165-120fd0b8152f/ENCFF482HAC.bam experiment not submitted to GEO ENCFF598ODG bigWig fold change over control ENCSR548QCP ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF482HAC 1646633659 Anshul Kundaje, Stanford cfc503c5acd206cfacf06d6933b6a826 https://www.encodeproject.org/files/ENCFF598ODG/@@download/ENCFF598ODG.bigWig GRCh38 released s3://encode-public/2016/12/22/cbcb99ea-2019-447c-8017-6bef74bc3d78/ENCFF598ODG.bigWig experiment not submitted to GEO ENCFF692TFU fastq reads ENCSR237VSF ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 0 ng/mL 0 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 40 paired-ended 2 ENCFF932NHC 2338603269 Manuel Garber, UMass 2077bd0c8299aa3da81bc0982891998f SRA:SRR5210398 https://www.encodeproject.org/files/ENCFF692TFU/@@download/ENCFF692TFU.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/c8fe70b8-c808-4b6e-8ef2-62cce124ea32/ENCFF692TFU.fastq.gz unreplicated experiment ENCFF932NHC fastq reads ENCSR237VSF ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 0 ng/mL 0 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 40 paired-ended 1 ENCFF692TFU 2171303895 Manuel Garber, UMass b1a0d5ccab2ed0d68a1e8eca020d0f10 SRA:SRR5210398 https://www.encodeproject.org/files/ENCFF932NHC/@@download/ENCFF932NHC.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/c7b99d53-4e86-46b8-9a62-295840b1af96/ENCFF932NHC.fastq.gz unreplicated experiment ENCFF185IWQ fastq reads ENCSR876SYO ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF050LTK 992777996 Bing Ren, UCSD 347dc464dd5e32e7559cc8f89477b2fe https://www.encodeproject.org/files/ENCFF185IWQ/@@download/ENCFF185IWQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/1885482d-e0ff-42e7-92b5-07bf0a475e35/ENCFF185IWQ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF043JPE fastq reads ENCSR876SYO ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF369BHN 1153243808 Bing Ren, UCSD 8c31260d27c4f8ab05aab78c624a8c5a https://www.encodeproject.org/files/ENCFF043JPE/@@download/ENCFF043JPE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/c4851c41-a518-48a1-9a05-c07103036df3/ENCFF043JPE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF050LTK fastq reads ENCSR876SYO ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF185IWQ 1073989044 Bing Ren, UCSD f80dc47ef546d16066b7d61087281532 https://www.encodeproject.org/files/ENCFF050LTK/@@download/ENCFF050LTK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/bc2daa28-99a2-4f35-b05a-d62261828c82/ENCFF050LTK.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF369BHN fastq reads ENCSR876SYO ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF043JPE 1060264800 Bing Ren, UCSD c85d7d7642df4eb6f5942a0f47fb4727 https://www.encodeproject.org/files/ENCFF369BHN/@@download/ENCFF369BHN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/a4e5301a-3b30-436b-9ca2-cb93ab92bc1b/ENCFF369BHN.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF595ZAG fastq reads ENCSR765MXG ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF815MRL 1306312607 Michael Snyder, Stanford 75a8bea0d172a0c26326d5318f100d39 https://www.encodeproject.org/files/ENCFF595ZAG/@@download/ENCFF595ZAG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/5d8044a0-b294-4cfb-a4b0-a25b63a06830/ENCFF595ZAG.fastq.gz experiment not submitted to GEO ENCFF348WZH fastq reads ENCSR765MXG ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF830DYJ 4515804277 Michael Snyder, Stanford 21d008d86c9e937c2e67621fdd4be2d9 https://www.encodeproject.org/files/ENCFF348WZH/@@download/ENCFF348WZH.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/dfe3ac0d-3576-4efd-bf33-eac3f3446286/ENCFF348WZH.fastq.gz experiment not submitted to GEO ENCFF830DYJ fastq reads ENCSR765MXG ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF348WZH 4815052910 Michael Snyder, Stanford 74fef33eef06c33bb89d82a2e71d84e5 https://www.encodeproject.org/files/ENCFF830DYJ/@@download/ENCFF830DYJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/291f2798-bcb9-4a5a-94f8-0cc3628bc1a8/ENCFF830DYJ.fastq.gz experiment not submitted to GEO ENCFF815MRL fastq reads ENCSR765MXG ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF595ZAG 1262891570 Michael Snyder, Stanford 75ad9febab0da21a786a9fee91b3b35e https://www.encodeproject.org/files/ENCFF815MRL/@@download/ENCFF815MRL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/c7a1b758-ac68-4238-b460-9c09f89330ec/ENCFF815MRL.fastq.gz experiment not submitted to GEO ENCFF829XME bam alignments ENCSR765MXG ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF348WZH, ENCFF595ZAG, ENCFF815MRL, ENCFF830DYJ 7331964483 Anshul Kundaje, Stanford 3cda4440912248ed7227e012d9755c8f https://www.encodeproject.org/files/ENCFF829XME/@@download/ENCFF829XME.bam GRCh38 released s3://encode-public/2016/12/22/585a6076-02d0-47ae-81ef-d89cfddfa98a/ENCFF829XME.bam experiment not submitted to GEO ENCFF998XTA bigWig signal p-value ENCSR765MXG ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF829XME 718805326 Anshul Kundaje, Stanford 13992ded817a01f7a84620985548a1b7 https://www.encodeproject.org/files/ENCFF998XTA/@@download/ENCFF998XTA.bigWig GRCh38 released s3://encode-public/2016/12/22/b025dcb4-751c-4233-a4ab-74312f88945a/ENCFF998XTA.bigWig experiment not submitted to GEO ENCFF791YDT bigWig fold change over control ENCSR765MXG ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF829XME 1014351149 Anshul Kundaje, Stanford 0cb5c3e492c21ebdb1aeef199081f684 https://www.encodeproject.org/files/ENCFF791YDT/@@download/ENCFF791YDT.bigWig GRCh38 released s3://encode-public/2016/12/22/3170247c-ab80-4a54-8d38-e4e08c63844f/ENCFF791YDT.bigWig experiment not submitted to GEO ENCFF703OJH fastq reads ENCSR490MSG ATAC-seq UBERON:0000992 ovary tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF272XCV 3652832702 Michael Snyder, Stanford a0139a9981fd1db0fcb19b2a91a54412 https://www.encodeproject.org/files/ENCFF703OJH/@@download/ENCFF703OJH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/31/ffc29e51-7ead-43c2-b517-c10bf570a08f/ENCFF703OJH.fastq.gz experiment not submitted to GEO ENCFF272XCV fastq reads ENCSR490MSG ATAC-seq UBERON:0000992 ovary tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF703OJH 3946547782 Michael Snyder, Stanford c37361781b964aefd6fe60bcfab31afb https://www.encodeproject.org/files/ENCFF272XCV/@@download/ENCFF272XCV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/31/04ed439d-b1e4-445e-8f6c-6a85177f032b/ENCFF272XCV.fastq.gz experiment not submitted to GEO ENCFF214JBF bigWig signal p-value ENCSR490MSG ATAC-seq UBERON:0000992 ovary tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF780JBA 1178268091 Anshul Kundaje, Stanford 861e9a45c563d5e7a3bdb4a116352c25 https://www.encodeproject.org/files/ENCFF214JBF/@@download/ENCFF214JBF.bigWig GRCh38 released s3://encode-public/2016/12/22/962c948a-b1ce-4be0-89d9-f10d47fc6f6e/ENCFF214JBF.bigWig experiment not submitted to GEO ENCFF780JBA bam alignments ENCSR490MSG ATAC-seq UBERON:0000992 ovary tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF272XCV, ENCFF703OJH 5174733758 Anshul Kundaje, Stanford ff95efef5fa1a63afb33a3b0d26bbe4d https://www.encodeproject.org/files/ENCFF780JBA/@@download/ENCFF780JBA.bam GRCh38 released s3://encode-public/2016/12/22/b4963faa-6fde-4ba9-be41-e27c4938ec0a/ENCFF780JBA.bam experiment not submitted to GEO ENCFF181UOS bigWig fold change over control ENCSR490MSG ATAC-seq UBERON:0000992 ovary tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF780JBA 1283961229 Anshul Kundaje, Stanford 244925712718c818a2ed987cf5df1dbf https://www.encodeproject.org/files/ENCFF181UOS/@@download/ENCFF181UOS.bigWig GRCh38 released s3://encode-public/2016/12/22/bb1a6a49-24a9-4694-96ed-c6bd4220ae7e/ENCFF181UOS.bigWig experiment not submitted to GEO ENCFF518FPU fastq reads ENCSR096JCC ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF754FRO 1213124079 Bing Ren, UCSD ce31e6b5f66f497e645ba06405f371ab https://www.encodeproject.org/files/ENCFF518FPU/@@download/ENCFF518FPU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/98cfcc52-6b3e-4be3-8fe0-caeb1351a40b/ENCFF518FPU.fastq.gz experiment not submitted to GEO ENCFF754FRO fastq reads ENCSR096JCC ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF518FPU 1339861524 Bing Ren, UCSD 917952f02687ba652ab47005e2b21d5d https://www.encodeproject.org/files/ENCFF754FRO/@@download/ENCFF754FRO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/55b389c5-670f-49a9-ab55-9cc4efb95e3b/ENCFF754FRO.fastq.gz experiment not submitted to GEO ENCFF458XRA fastq reads ENCSR096JCC ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF882GWB 1677474959 Bing Ren, UCSD 35060897086862a6b968d3ee7e8fc1e3 https://www.encodeproject.org/files/ENCFF458XRA/@@download/ENCFF458XRA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/9ced17ab-f4b1-404f-b916-bfab02cac70e/ENCFF458XRA.fastq.gz experiment not submitted to GEO ENCFF882GWB fastq reads ENCSR096JCC ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF458XRA 1844272986 Bing Ren, UCSD e370517a5b89d4aee60b358103e53234 https://www.encodeproject.org/files/ENCFF882GWB/@@download/ENCFF882GWB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/04c8bc37-4f34-4825-955f-cedb0dba4ced/ENCFF882GWB.fastq.gz experiment not submitted to GEO ENCFF222REZ bam alignments ENCSR096JCC ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF518FPU, ENCFF754FRO 2607123926 Anshul Kundaje, Stanford 3e2c14bcc9590d10589310afff1f98ba https://www.encodeproject.org/files/ENCFF222REZ/@@download/ENCFF222REZ.bam mm10 released s3://encode-public/2017/04/25/eea5e77c-a122-48b0-a655-73cb1222884a/ENCFF222REZ.bam experiment not submitted to GEO ENCFF060SRR bam alignments ENCSR096JCC ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF458XRA, ENCFF882GWB 3746200279 Anshul Kundaje, Stanford 2513ecb5d42a5f70af5c7de899caff62 https://www.encodeproject.org/files/ENCFF060SRR/@@download/ENCFF060SRR.bam mm10 released s3://encode-public/2017/04/25/44f2522e-dbdb-43e9-b677-43ba5bd50a8c/ENCFF060SRR.bam experiment not submitted to GEO ENCFF428QAF bigWig fold change over control ENCSR096JCC ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF222REZ 593577729 Anshul Kundaje, Stanford 1492d3fa360517a5a419bc97ad006107 https://www.encodeproject.org/files/ENCFF428QAF/@@download/ENCFF428QAF.bigWig mm10 released s3://encode-public/2017/04/25/db4881d9-9f2e-4e34-bd48-606493225e51/ENCFF428QAF.bigWig experiment not submitted to GEO ENCFF726WLC bigWig signal p-value ENCSR096JCC ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF060SRR 711677049 Anshul Kundaje, Stanford 5f783354de68e42f8c19798cdd09e551 https://www.encodeproject.org/files/ENCFF726WLC/@@download/ENCFF726WLC.bigWig mm10 released s3://encode-public/2017/04/25/83387bb6-c140-4d72-8fff-0ce74918466f/ENCFF726WLC.bigWig experiment not submitted to GEO ENCFF456SBJ bigWig signal p-value ENCSR096JCC ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF222REZ 535382867 Anshul Kundaje, Stanford 74ab1846dac67cf07f2a625831ad6c4c https://www.encodeproject.org/files/ENCFF456SBJ/@@download/ENCFF456SBJ.bigWig mm10 released s3://encode-public/2017/04/25/56150674-4eb0-417c-8dc1-7e8dce588504/ENCFF456SBJ.bigWig experiment not submitted to GEO ENCFF242FBC bigWig fold change over control ENCSR096JCC ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF060SRR 889715032 Anshul Kundaje, Stanford dc0c444160394f56d69e80b4d2371a76 https://www.encodeproject.org/files/ENCFF242FBC/@@download/ENCFF242FBC.bigWig mm10 released s3://encode-public/2017/04/25/814a196e-2fe1-4263-91b3-668ab451fce6/ENCFF242FBC.bigWig experiment not submitted to GEO ENCFF272PIN fastq reads ENCSR017RQC ATAC-seq UBERON:0001211 Peyer's patch tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 1 ENCFF735IXH 3798722636 Michael Snyder, Stanford f84d974dfda1131920cc4cbe00535b49 https://www.encodeproject.org/files/ENCFF272PIN/@@download/ENCFF272PIN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/28/1e93bd48-64ee-4400-b9c4-800c6e94f60d/ENCFF272PIN.fastq.gz experiment not submitted to GEO ENCFF735IXH fastq reads ENCSR017RQC ATAC-seq UBERON:0001211 Peyer's patch tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 2 ENCFF272PIN 4157015822 Michael Snyder, Stanford b8703b2542cd234b9e976a93bca5f2d6 https://www.encodeproject.org/files/ENCFF735IXH/@@download/ENCFF735IXH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/28/04cf9e72-59bb-4601-891a-0475b82e8175/ENCFF735IXH.fastq.gz experiment not submitted to GEO ENCFF319VDG bigWig signal p-value ENCSR017RQC ATAC-seq UBERON:0001211 Peyer's patch tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF782KTJ 926884548 Anshul Kundaje, Stanford e8b34cd931cce6f2a1d4be4c0cb5c0b5 https://www.encodeproject.org/files/ENCFF319VDG/@@download/ENCFF319VDG.bigWig GRCh38 released s3://encode-public/2017/02/09/f7a0a7d7-ca87-4386-9a00-58f3940b941c/ENCFF319VDG.bigWig experiment not submitted to GEO ENCFF782KTJ bam alignments ENCSR017RQC ATAC-seq UBERON:0001211 Peyer's patch tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF272PIN, ENCFF735IXH 5336882597 Anshul Kundaje, Stanford 3df362ac9137f20604f669ba2514d092 https://www.encodeproject.org/files/ENCFF782KTJ/@@download/ENCFF782KTJ.bam GRCh38 released s3://encode-public/2017/02/09/1f59a6a5-54ab-4513-b5e4-c068efacef9f/ENCFF782KTJ.bam experiment not submitted to GEO ENCFF911QNT bigWig fold change over control ENCSR017RQC ATAC-seq UBERON:0001211 Peyer's patch tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF782KTJ 1303933418 Anshul Kundaje, Stanford 177213812b391db22d2590c7cff738d7 https://www.encodeproject.org/files/ENCFF911QNT/@@download/ENCFF911QNT.bigWig GRCh38 released s3://encode-public/2017/02/09/52583366-9008-46f6-abbd-bd6928981501/ENCFF911QNT.bigWig experiment not submitted to GEO ENCFF747ZCB fastq reads ENCSR382RUC ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF236CXJ 2293808068 Bing Ren, UCSD 338fbbd3c77cb4856f7c4546bbcd829b https://www.encodeproject.org/files/ENCFF747ZCB/@@download/ENCFF747ZCB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/cc1ddb92-986f-4dec-b1ad-a9e80b38e1ac/ENCFF747ZCB.fastq.gz experiment not submitted to GEO ENCFF315TMY fastq reads ENCSR382RUC ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF752YLN 1657350732 Bing Ren, UCSD c8b01481196dfdc0bf44df6cfa1b7fc9 https://www.encodeproject.org/files/ENCFF315TMY/@@download/ENCFF315TMY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/9861895e-8199-4b7a-8c3d-1a6ad52f30d8/ENCFF315TMY.fastq.gz experiment not submitted to GEO ENCFF752YLN fastq reads ENCSR382RUC ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF315TMY 1799992844 Bing Ren, UCSD f6903d36357f4d81ffa8418adc2ec372 https://www.encodeproject.org/files/ENCFF752YLN/@@download/ENCFF752YLN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/185900c8-481d-4737-b7ee-88b049561c74/ENCFF752YLN.fastq.gz experiment not submitted to GEO ENCFF236CXJ fastq reads ENCSR382RUC ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF747ZCB 2482353972 Bing Ren, UCSD 4dc7b79a9015079d2c4cf096a36cbc67 https://www.encodeproject.org/files/ENCFF236CXJ/@@download/ENCFF236CXJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/a83166bd-22b3-48b6-bf2a-bbd5279c2329/ENCFF236CXJ.fastq.gz experiment not submitted to GEO ENCFF788FML bam alignments ENCSR382RUC ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF236CXJ, ENCFF747ZCB 4580027188 Anshul Kundaje, Stanford 71886ba3f2ed6beb593cfa158e0f9796 https://www.encodeproject.org/files/ENCFF788FML/@@download/ENCFF788FML.bam mm10 released s3://encode-public/2017/04/25/176ce488-244b-4e5e-b1b5-75257bc6593f/ENCFF788FML.bam experiment not submitted to GEO ENCFF879AYI bam alignments ENCSR382RUC ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF315TMY, ENCFF752YLN 3333680777 Anshul Kundaje, Stanford 891c90615e92000c6861e1dc91a61875 https://www.encodeproject.org/files/ENCFF879AYI/@@download/ENCFF879AYI.bam mm10 released s3://encode-public/2017/04/25/49f38240-dfb4-4acd-8c41-d7ccbb2e59ff/ENCFF879AYI.bam experiment not submitted to GEO ENCFF492PHS bigWig signal p-value ENCSR382RUC ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF879AYI 609083217 Anshul Kundaje, Stanford 14bfd9cca1b440951ebdaaa86c547d0b https://www.encodeproject.org/files/ENCFF492PHS/@@download/ENCFF492PHS.bigWig mm10 released s3://encode-public/2017/04/25/288c6782-4e82-46ee-a195-5c29f0ed3f48/ENCFF492PHS.bigWig experiment not submitted to GEO ENCFF964FDT bigWig signal p-value ENCSR382RUC ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF788FML 685375911 Anshul Kundaje, Stanford 547d6524d9f32a6ce94cb9353dc6288f https://www.encodeproject.org/files/ENCFF964FDT/@@download/ENCFF964FDT.bigWig mm10 released s3://encode-public/2017/04/25/7a7d68fa-7d8e-4c93-9a59-86f2e9ab5753/ENCFF964FDT.bigWig experiment not submitted to GEO ENCFF246HHN bigWig fold change over control ENCSR382RUC ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF879AYI 730503285 Anshul Kundaje, Stanford f1d3f8b1d594a82ee461d074d21b6bfc https://www.encodeproject.org/files/ENCFF246HHN/@@download/ENCFF246HHN.bigWig mm10 released s3://encode-public/2017/04/26/c45be4e8-13ff-48d4-b85e-127d6e2d50cd/ENCFF246HHN.bigWig experiment not submitted to GEO ENCFF889QAK bigWig fold change over control ENCSR382RUC ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF788FML 1023892204 Anshul Kundaje, Stanford 809be05d9eaf9624d9894ac2ca877210 https://www.encodeproject.org/files/ENCFF889QAK/@@download/ENCFF889QAK.bigWig mm10 released s3://encode-public/2017/04/26/d9fbb98e-6ace-4d52-aa74-fa6f533b41a3/ENCFF889QAK.bigWig experiment not submitted to GEO ENCFF388RQI fastq reads ENCSR724UJS ATAC-seq CL:0000815 regulatory T cell primary cell Mus musculus DNA False 2017-03-07 GGR 1 2 50 paired-ended 2 ENCFF047KQJ 1941621594 Christina Leslie, MSKCC 5d195edb01388fb39d8d51b688e9ced6 https://www.encodeproject.org/files/ENCFF388RQI/@@download/ENCFF388RQI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/05/b970576b-c3d6-4b9e-b9d9-b983f85533e9/ENCFF388RQI.fastq.gz experiment not submitted to GEO, missing donor unreplicated experiment ENCFF047KQJ fastq reads ENCSR724UJS ATAC-seq CL:0000815 regulatory T cell primary cell Mus musculus DNA False 2017-03-07 GGR 1 2 50 paired-ended 1 ENCFF388RQI 1914287496 Christina Leslie, MSKCC fc63e58e3da0804cd9b059203868252c https://www.encodeproject.org/files/ENCFF047KQJ/@@download/ENCFF047KQJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/05/d100de1f-1eb9-4b8c-bf57-c2f8499a538d/ENCFF047KQJ.fastq.gz experiment not submitted to GEO, missing donor unreplicated experiment ENCFF175VOD fastq reads ENCSR724UJS ATAC-seq CL:0000815 regulatory T cell primary cell Mus musculus DNA False 2017-03-07 GGR 1 1 50 paired-ended 1 ENCFF447BGX 809414402 Christina Leslie, MSKCC 73696a097286917fd29d36838cb07f75 https://www.encodeproject.org/files/ENCFF175VOD/@@download/ENCFF175VOD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/05/2aa465ec-d479-4bae-b8d4-1750de8fd695/ENCFF175VOD.fastq.gz experiment not submitted to GEO, missing donor unreplicated experiment ENCFF447BGX fastq reads ENCSR724UJS ATAC-seq CL:0000815 regulatory T cell primary cell Mus musculus DNA False 2017-03-07 GGR 1 1 50 paired-ended 2 ENCFF175VOD 822029347 Christina Leslie, MSKCC e8848a826c6ba69e91e096dfe9f3066b https://www.encodeproject.org/files/ENCFF447BGX/@@download/ENCFF447BGX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/05/3959ebc1-449a-442f-8a3c-8ff1701a1825/ENCFF447BGX.fastq.gz experiment not submitted to GEO, missing donor unreplicated experiment ENCFF053CGD bam alignments ENCSR724UJS ATAC-seq CL:0000815 regulatory T cell primary cell Mus musculus DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF175VOD, ENCFF447BGX 845814951 Christina Leslie, MSKCC b95e11987f66b0a89c594714270d3f90 https://www.encodeproject.org/files/ENCFF053CGD/@@download/ENCFF053CGD.bam mm10 released s3://encode-public/2016/12/05/a7b7e6e4-59e3-4c92-8d5a-15c350bb8712/ENCFF053CGD.bam experiment not submitted to GEO, missing donor unreplicated experiment ENCFF557JSA bam alignments ENCSR724UJS ATAC-seq CL:0000815 regulatory T cell primary cell Mus musculus DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF047KQJ, ENCFF388RQI 1832990430 Christina Leslie, MSKCC d9e05f1e2d90cd0249ab12f7f809f4c3 https://www.encodeproject.org/files/ENCFF557JSA/@@download/ENCFF557JSA.bam mm10 released s3://encode-public/2016/12/05/73a96dd2-80a6-4a6d-9f97-f649477c8793/ENCFF557JSA.bam experiment not submitted to GEO, missing donor unreplicated experiment ENCFF520GRD bed narrowPeak peaks ENCSR724UJS ATAC-seq CL:0000815 regulatory T cell primary cell Mus musculus DNA False 2017-03-07 GGR 1 ENCFF053CGD, ENCFF557JSA 2050735 Christina Leslie, MSKCC e5aa20cb8442d3fbe5713385a39daf93 https://www.encodeproject.org/files/ENCFF520GRD/@@download/ENCFF520GRD.bed.gz mm10 released s3://encode-public/2017/01/09/64ba6861-4723-447e-b007-00b34e7870f9/ENCFF520GRD.bed.gz experiment not submitted to GEO, missing donor unreplicated experiment ENCFF049NKX fastq reads ENCSR584AXZ ATAC-seq UBERON:0001621 coronary artery tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 1 ENCFF089IIY 2754227386 Michael Snyder, Stanford d89e83d5b0cd7f22331d0d1545eb6472 https://www.encodeproject.org/files/ENCFF049NKX/@@download/ENCFF049NKX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/02/07/c8911e03-5602-438b-a0b8-23ec99a6b40e/ENCFF049NKX.fastq.gz experiment not submitted to GEO ENCFF089IIY fastq reads ENCSR584AXZ ATAC-seq UBERON:0001621 coronary artery tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 2 ENCFF049NKX 3103212538 Michael Snyder, Stanford 98c020b0a3e2df82628aea2a2031c1bc https://www.encodeproject.org/files/ENCFF089IIY/@@download/ENCFF089IIY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/02/07/f40b5563-3c7e-4421-9ca9-5a2c1ce2d9f9/ENCFF089IIY.fastq.gz experiment not submitted to GEO ENCFF900AMT bam alignments ENCSR584AXZ ATAC-seq UBERON:0001621 coronary artery tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF049NKX, ENCFF089IIY 3558635153 Anshul Kundaje, Stanford 6e5209e69ac99a480c574dff7a13fde3 https://www.encodeproject.org/files/ENCFF900AMT/@@download/ENCFF900AMT.bam GRCh38 released s3://encode-public/2017/04/01/778b9ad2-9caf-4b89-9755-dfb406e6ef91/ENCFF900AMT.bam experiment not submitted to GEO ENCFF352UTD bigWig fold change over control ENCSR584AXZ ATAC-seq UBERON:0001621 coronary artery tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF900AMT 844031676 Anshul Kundaje, Stanford 72945b4e5b9d66bd5f31aa52fb6c1717 https://www.encodeproject.org/files/ENCFF352UTD/@@download/ENCFF352UTD.bigWig GRCh38 released s3://encode-public/2017/04/01/da1fc720-854c-4eb9-b1f2-ed5d5dc474b6/ENCFF352UTD.bigWig experiment not submitted to GEO ENCFF068PMK bigWig signal p-value ENCSR584AXZ ATAC-seq UBERON:0001621 coronary artery tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF900AMT 661335861 Anshul Kundaje, Stanford 24bf8a46a7dad7908927a4f95d7c400d https://www.encodeproject.org/files/ENCFF068PMK/@@download/ENCFF068PMK.bigWig GRCh38 released s3://encode-public/2017/04/01/2121a1fb-b47b-4906-9c46-fae691b34b2a/ENCFF068PMK.bigWig experiment not submitted to GEO ENCFF176IZG fastq reads ENCSR609OHJ ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF599TJR 2417817118 Bing Ren, UCSD 24eebed0eb2cb031d05d0d67f373ac02 https://www.encodeproject.org/files/ENCFF176IZG/@@download/ENCFF176IZG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/436d9167-7b99-45bd-95d9-ba83a788f7e4/ENCFF176IZG.fastq.gz experiment not submitted to GEO ENCFF957VLH fastq reads ENCSR609OHJ ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF999IJT 1748269555 Bing Ren, UCSD d375e5eea521e0638c727d3e3a4b3b21 https://www.encodeproject.org/files/ENCFF957VLH/@@download/ENCFF957VLH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/d939e0b1-0d49-4703-8b44-4ddcfa888bad/ENCFF957VLH.fastq.gz experiment not submitted to GEO ENCFF999IJT fastq reads ENCSR609OHJ ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF957VLH 1880796060 Bing Ren, UCSD d48829b89549efaf9d55477d4a3420c2 https://www.encodeproject.org/files/ENCFF999IJT/@@download/ENCFF999IJT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/eaeeaac1-dfb5-4a10-ae3c-f3537d82a02d/ENCFF999IJT.fastq.gz experiment not submitted to GEO ENCFF599TJR fastq reads ENCSR609OHJ ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF176IZG 2282679080 Bing Ren, UCSD be3288a9e40c30a086c2b72a7cecdb9e https://www.encodeproject.org/files/ENCFF599TJR/@@download/ENCFF599TJR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/4ac0b021-7dd9-4c52-b9ac-fbfd4bebf139/ENCFF599TJR.fastq.gz experiment not submitted to GEO ENCFF109LQF bam alignments ENCSR609OHJ ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF957VLH, ENCFF999IJT 2395571578 Anshul Kundaje, Stanford d2b987bfff97412de5f064890cf80204 https://www.encodeproject.org/files/ENCFF109LQF/@@download/ENCFF109LQF.bam mm10 released s3://encode-public/2017/04/25/5af4d354-86d4-44bf-a2f0-85a83bf97312/ENCFF109LQF.bam experiment not submitted to GEO ENCFF146ZCO bam alignments ENCSR609OHJ ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF176IZG, ENCFF599TJR 3266937266 Anshul Kundaje, Stanford 71839e5154096cfb8f1768a591a77631 https://www.encodeproject.org/files/ENCFF146ZCO/@@download/ENCFF146ZCO.bam mm10 released s3://encode-public/2017/04/25/1d0f8ddb-53af-48a9-ae2c-720a25f513e9/ENCFF146ZCO.bam experiment not submitted to GEO ENCFF932IWY bigWig signal p-value ENCSR609OHJ ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF146ZCO 478119888 Anshul Kundaje, Stanford 94ce80af6ddc3405bd918ccdb9738c20 https://www.encodeproject.org/files/ENCFF932IWY/@@download/ENCFF932IWY.bigWig mm10 released s3://encode-public/2017/04/25/854a8fbf-3b51-4656-8f10-277afccea0c5/ENCFF932IWY.bigWig experiment not submitted to GEO ENCFF087IDL bigWig signal p-value ENCSR609OHJ ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF109LQF 373308280 Anshul Kundaje, Stanford 90ab15332c673cd389d411f39a78b2c0 https://www.encodeproject.org/files/ENCFF087IDL/@@download/ENCFF087IDL.bigWig mm10 released s3://encode-public/2017/04/25/0633d8cc-5843-4e29-bc0c-574fd5c82595/ENCFF087IDL.bigWig experiment not submitted to GEO ENCFF770CQD bigWig fold change over control ENCSR609OHJ ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF146ZCO 620622604 Anshul Kundaje, Stanford 723e69f3ef6c037d5e26597093e09f8f https://www.encodeproject.org/files/ENCFF770CQD/@@download/ENCFF770CQD.bigWig mm10 released s3://encode-public/2017/04/26/e050dbec-2f6c-40fa-b60b-41a195a5d51b/ENCFF770CQD.bigWig experiment not submitted to GEO ENCFF736XMG bigWig fold change over control ENCSR609OHJ ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF109LQF 460962287 Anshul Kundaje, Stanford b05232d23b95389eeb0a77db0e387e7b https://www.encodeproject.org/files/ENCFF736XMG/@@download/ENCFF736XMG.bigWig mm10 released s3://encode-public/2017/04/26/7778667a-f27a-41d9-b737-1e8daa2768aa/ENCFF736XMG.bigWig experiment not submitted to GEO ENCFF341MYG fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 1 1 76 paired-ended 1 ENCFF248EJF 3501113327 Will Greenleaf, Stanford ffe98eb6998d9ddda373c349f6cc6729 https://www.encodeproject.org/files/ENCFF341MYG/@@download/ENCFF341MYG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/08/012e0e5f-7b03-470b-bd30-2a348495b7cd/ENCFF341MYG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF248EJF fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 1 1 76 paired-ended 2 ENCFF341MYG 3593718973 Will Greenleaf, Stanford 57c4855bdca63ca181bfbe99b8be4f02 https://www.encodeproject.org/files/ENCFF248EJF/@@download/ENCFF248EJF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/12/08/958ae920-0104-42e5-989a-deecb024b9e7/ENCFF248EJF.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF368TYI fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 1 2 76 paired-ended 2 ENCFF106QGY 3164429011 Michael Snyder, Stanford c321c8d03fb08b12672498cfc0b98802 https://www.encodeproject.org/files/ENCFF368TYI/@@download/ENCFF368TYI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d0c9e797-6f17-41c9-b624-681265608f2a/ENCFF368TYI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF193RRC fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 2 2 76 paired-ended 1 ENCFF886FSC 1611532931 Michael Snyder, Stanford fa14dde9735705fed98a81d0c6678a5e https://www.encodeproject.org/files/ENCFF193RRC/@@download/ENCFF193RRC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/5d762681-1c32-41e7-96e6-40e5bb8a35aa/ENCFF193RRC.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF734PEQ fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 2 5 76 paired-ended 2 ENCFF927LSG 970302879 Michael Snyder, Stanford 21739a4b7c8885a79a91cb9b915c74ba https://www.encodeproject.org/files/ENCFF734PEQ/@@download/ENCFF734PEQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/5c995252-029b-4cc4-9ccf-7c24cb5f57de/ENCFF734PEQ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF573UXK fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 2 3 76 paired-ended 2 ENCFF366DFI 1804751579 Michael Snyder, Stanford a1eedc5fd80f38a7105888f9ba1a16f3 https://www.encodeproject.org/files/ENCFF573UXK/@@download/ENCFF573UXK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/22d573a3-4e9f-4c5f-8ac9-8bb8136e97fe/ENCFF573UXK.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF106QGY fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 1 2 76 paired-ended 1 ENCFF368TYI 2899441457 Michael Snyder, Stanford 152ada3f35103d85e83850f59589f11c https://www.encodeproject.org/files/ENCFF106QGY/@@download/ENCFF106QGY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/2b4521c2-e02d-4fe8-bf7d-c7f677885549/ENCFF106QGY.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF859BDM fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 2 1 76 paired-ended 1 ENCFF007USV 1924924647 Michael Snyder, Stanford 3f16fec0a21fe1f1eb89c0aa25a4b59e https://www.encodeproject.org/files/ENCFF859BDM/@@download/ENCFF859BDM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/02f91e73-39fa-47b2-ab37-9f2743a3531d/ENCFF859BDM.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF007USV fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 2 1 76 paired-ended 2 ENCFF859BDM 1986291766 Michael Snyder, Stanford eef5de58c73001d12133b3820c3fa22d https://www.encodeproject.org/files/ENCFF007USV/@@download/ENCFF007USV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/1a6578e9-df78-4643-922a-9d4447cd3bd0/ENCFF007USV.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF886FSC fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 2 2 76 paired-ended 2 ENCFF193RRC 1766722922 Michael Snyder, Stanford 4fcd83171ff48133e4e04c57c3e61e9c https://www.encodeproject.org/files/ENCFF886FSC/@@download/ENCFF886FSC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/dd830b91-ddbd-448a-986b-3b2ee2d1b171/ENCFF886FSC.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF366DFI fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 2 3 76 paired-ended 1 ENCFF573UXK 1726278899 Michael Snyder, Stanford 1350bd904b0c31ce06eb76d7e01287b9 https://www.encodeproject.org/files/ENCFF366DFI/@@download/ENCFF366DFI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/01b59897-2c97-4f9b-8dbe-53335dafe3f4/ENCFF366DFI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF751XTV fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 2 4 76 paired-ended 1 ENCFF590SYZ 957278098 Michael Snyder, Stanford 9aba84ad81981f0a347332d685873469 https://www.encodeproject.org/files/ENCFF751XTV/@@download/ENCFF751XTV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/8f539cce-f9a5-4bef-a918-ea35330b549b/ENCFF751XTV.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF590SYZ fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 2 4 76 paired-ended 2 ENCFF751XTV 1059572957 Michael Snyder, Stanford ec87b23626ec65fb499c11f9edf29396 https://www.encodeproject.org/files/ENCFF590SYZ/@@download/ENCFF590SYZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/c83495ac-7405-455f-9c08-952660a64091/ENCFF590SYZ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF927LSG fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 2 5 76 paired-ended 1 ENCFF734PEQ 883471477 Michael Snyder, Stanford 235fa4af5558e8083e7f971378b42432 https://www.encodeproject.org/files/ENCFF927LSG/@@download/ENCFF927LSG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d8fe263c-ffb5-4af9-ae32-8792791b3707/ENCFF927LSG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF641SFZ fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 2 6 76 paired-ended 1 ENCFF031ARQ 665922538 Michael Snyder, Stanford 991b274b4dfa91413e4bd3fead368c66 https://www.encodeproject.org/files/ENCFF641SFZ/@@download/ENCFF641SFZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/92e9bb3b-bc49-43f4-81d9-f51fbc5bb8d5/ENCFF641SFZ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF031ARQ fastq reads ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 2 6 76 paired-ended 2 ENCFF641SFZ 699048325 Michael Snyder, Stanford e242ec737b8303896a799209c9b26915 https://www.encodeproject.org/files/ENCFF031ARQ/@@download/ENCFF031ARQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/c924cd45-7eb1-46dd-8680-8a8955470a10/ENCFF031ARQ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF111ULL bam alignments ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 2 ENCFF007USV, ENCFF031ARQ, ENCFF193RRC, ENCFF366DFI, ENCFF573UXK, ENCFF590SYZ, ENCFF641SFZ, ENCFF734PEQ, ENCFF751XTV, ENCFF859BDM, ENCFF886FSC, ENCFF927LSG 8570702736 Anshul Kundaje, Stanford 976019fd12858da7effcf54c6e214f95 https://www.encodeproject.org/files/ENCFF111ULL/@@download/ENCFF111ULL.bam GRCh38 released s3://encode-public/2017/04/01/ebbdc35b-c4fe-4144-b065-5907b4d5ccef/ENCFF111ULL.bam mismatched file status, experiment not submitted to GEO ENCFF654ZNI bam alignments ENCSR356KRQ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens DNA False 2017-10-10 GGR 1 ENCFF106QGY, ENCFF248EJF, ENCFF341MYG, ENCFF368TYI 6616747220 Anshul Kundaje, Stanford e5c93c60ef7853ba301ff20bdcfc2374 https://www.encodeproject.org/files/ENCFF654ZNI/@@download/ENCFF654ZNI.bam GRCh38 released s3://encode-public/2017/04/01/42efc584-da9a-492a-a17f-83b62f1ac58b/ENCFF654ZNI.bam mismatched file status, experiment not submitted to GEO ENCFF891RRQ fastq reads ENCSR308HPZ ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF924KBV 2283012648 Michael Snyder, Stanford cff1f490abb99540bc15c0ba8f87cf79 https://www.encodeproject.org/files/ENCFF891RRQ/@@download/ENCFF891RRQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/a93bc50b-2b79-4515-af52-d5757c69f36d/ENCFF891RRQ.fastq.gz experiment not submitted to GEO ENCFF556GHO fastq reads ENCSR308HPZ ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF260WLD 2280824550 Michael Snyder, Stanford 82be895523eab94834358ffcf0ef390f https://www.encodeproject.org/files/ENCFF556GHO/@@download/ENCFF556GHO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/b3e4cfae-b98e-4881-b121-6e49321f288c/ENCFF556GHO.fastq.gz experiment not submitted to GEO ENCFF924KBV fastq reads ENCSR308HPZ ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF891RRQ 2263310537 Michael Snyder, Stanford eadf51b4831439e8a440ff473846d4d6 https://www.encodeproject.org/files/ENCFF924KBV/@@download/ENCFF924KBV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/8ac51d4b-b4bc-4a40-a8bf-f3f8a41659e8/ENCFF924KBV.fastq.gz experiment not submitted to GEO ENCFF260WLD fastq reads ENCSR308HPZ ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF556GHO 2188029798 Michael Snyder, Stanford a7ed3403414ef0689af4f13b62bee39f https://www.encodeproject.org/files/ENCFF260WLD/@@download/ENCFF260WLD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/8a583cc7-7689-48c5-a341-219bc1da6824/ENCFF260WLD.fastq.gz experiment not submitted to GEO ENCFF478ARL bam alignments ENCSR308HPZ ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF260WLD, ENCFF556GHO, ENCFF891RRQ, ENCFF924KBV 6743440316 Anshul Kundaje, Stanford decab633621b3a7e0c858db007700752 https://www.encodeproject.org/files/ENCFF478ARL/@@download/ENCFF478ARL.bam GRCh38 released s3://encode-public/2016/12/22/d2d409ab-8867-4b40-a0b6-f573626a9d12/ENCFF478ARL.bam experiment not submitted to GEO ENCFF175EDN bigWig fold change over control ENCSR308HPZ ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF478ARL 997139775 Anshul Kundaje, Stanford a077e7231deabfcdf71855d117ab5ec3 https://www.encodeproject.org/files/ENCFF175EDN/@@download/ENCFF175EDN.bigWig GRCh38 released s3://encode-public/2016/12/22/7f9bb391-c035-4d43-bb58-776bcd06e66a/ENCFF175EDN.bigWig experiment not submitted to GEO ENCFF629BFT bigWig signal p-value ENCSR308HPZ ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF478ARL 961745421 Anshul Kundaje, Stanford 08b5b39c0eba9a6b6a193916bc96f8a5 https://www.encodeproject.org/files/ENCFF629BFT/@@download/ENCFF629BFT.bigWig GRCh38 released s3://encode-public/2016/12/22/995f9a05-a6d8-4917-a299-e5dd926a141d/ENCFF629BFT.bigWig experiment not submitted to GEO ENCFF112OMC fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 2 ENCFF571XQU 502156511 Michael Snyder, Stanford 1095558a4a6923e6c43213d3598c043e https://www.encodeproject.org/files/ENCFF112OMC/@@download/ENCFF112OMC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/cb100467-afae-40ce-8651-c03e4595550a/ENCFF112OMC.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF119DQL fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 2 ENCFF534QUD 2833832001 Michael Snyder, Stanford d47c40487a4261a5ef07a6584d470a25 https://www.encodeproject.org/files/ENCFF119DQL/@@download/ENCFF119DQL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/044cf122-8bfc-4b11-b3a1-187285ee9f9e/ENCFF119DQL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF712JSX fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 2 ENCFF762PDO 1481284571 Michael Snyder, Stanford 5d03afac4abeac17b64e36795a5d81a9 https://www.encodeproject.org/files/ENCFF712JSX/@@download/ENCFF712JSX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/8e03b06c-7bbd-4edc-bb9f-efe14684cf75/ENCFF712JSX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF210INV fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 1 ENCFF885ZCL 814671281 Michael Snyder, Stanford 3fa92d8a93c069e554d8e177c4f596c9 https://www.encodeproject.org/files/ENCFF210INV/@@download/ENCFF210INV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/3e153c88-5b92-4679-8502-1520c3211888/ENCFF210INV.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF999VMV fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 1 ENCFF911BFY 1354431095 Michael Snyder, Stanford 2f3900a9588a0975d8904751d50806dd https://www.encodeproject.org/files/ENCFF999VMV/@@download/ENCFF999VMV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/c2f1a440-9ed9-45a6-979c-294ba56e9c26/ENCFF999VMV.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF870CBM fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 1 ENCFF465NVI 1583861903 Michael Snyder, Stanford a31285db3ba6380f489c370b3ca0c5af https://www.encodeproject.org/files/ENCFF870CBM/@@download/ENCFF870CBM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/1e155936-0d9f-4fc0-b85b-f7c9b58cd625/ENCFF870CBM.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF465NVI fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 2 ENCFF870CBM 1753920668 Michael Snyder, Stanford c4b1e0753d8251c57f780b69733c8387 https://www.encodeproject.org/files/ENCFF465NVI/@@download/ENCFF465NVI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/83ffebb4-19b9-4291-89c3-b9cd4e0419a8/ENCFF465NVI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF911BFY fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 2 ENCFF999VMV 1380221057 Michael Snyder, Stanford da0dd9b33888c0ca56a8802469241275 https://www.encodeproject.org/files/ENCFF911BFY/@@download/ENCFF911BFY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/29c51599-7284-415e-a59d-794ea12bcb1d/ENCFF911BFY.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF571XQU fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 1 ENCFF112OMC 462736555 Michael Snyder, Stanford 3e0cb803e9c9f2e3c1d964062ddbbdf7 https://www.encodeproject.org/files/ENCFF571XQU/@@download/ENCFF571XQU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/601347a9-1ee2-4608-b77f-f498accb11ea/ENCFF571XQU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF762PDO fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 1 ENCFF712JSX 1399221520 Michael Snyder, Stanford b932a2386437ffb8dbdc75e360a8c06c https://www.encodeproject.org/files/ENCFF762PDO/@@download/ENCFF762PDO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/e9b54198-b90d-49da-9376-db176d359290/ENCFF762PDO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF146NGQ fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 2 ENCFF003LNW 2402279390 Michael Snyder, Stanford 4e94eb3acdaf7e063eb92a5bf449c912 https://www.encodeproject.org/files/ENCFF146NGQ/@@download/ENCFF146NGQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/988f6509-881a-46e7-815c-9e08e071ec60/ENCFF146NGQ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF885ZCL fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 2 ENCFF210INV 904831182 Michael Snyder, Stanford cb00913a1ecafb6fb41346041fd3024e https://www.encodeproject.org/files/ENCFF885ZCL/@@download/ENCFF885ZCL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/cd143d33-80fc-497f-979f-101c004649d9/ENCFF885ZCL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF003LNW fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 1 ENCFF146NGQ 2328542015 Michael Snyder, Stanford 17ba692d403f7874cdd2e51a4b8bb7db https://www.encodeproject.org/files/ENCFF003LNW/@@download/ENCFF003LNW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/fa6b0ec8-8498-45ed-a61a-d8707b2d2a2b/ENCFF003LNW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF909AYB fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 2 ENCFF312PBC 1290985697 Michael Snyder, Stanford 945690cad14c3831e45da69aaf60d835 https://www.encodeproject.org/files/ENCFF909AYB/@@download/ENCFF909AYB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/0f9c1017-85d2-47d0-9334-463f6d4c3e48/ENCFF909AYB.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF153VMV fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 1 ENCFF798VAO 1105250769 Michael Snyder, Stanford eb2e8828f0d4894a172ffd319ef968db https://www.encodeproject.org/files/ENCFF153VMV/@@download/ENCFF153VMV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/b544eb80-4ed6-4eac-a4e2-f4c2134f900f/ENCFF153VMV.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF798VAO fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 2 ENCFF153VMV 1169290377 Michael Snyder, Stanford d8f50ea9781877e1faef5817136a44be https://www.encodeproject.org/files/ENCFF798VAO/@@download/ENCFF798VAO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/11bc9028-56d3-4e0a-961e-d54620866d7a/ENCFF798VAO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF534QUD fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 1 ENCFF119DQL 2582517068 Michael Snyder, Stanford 4a76f28b3cd6c265d2bd10c074844ce9 https://www.encodeproject.org/files/ENCFF534QUD/@@download/ENCFF534QUD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/7b78d632-f853-4f04-b3ab-d4e8dfe65576/ENCFF534QUD.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF312PBC fastq reads ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 1 ENCFF909AYB 1222541807 Michael Snyder, Stanford 2fa930189276e89fdc02f1fc2783a6e4 https://www.encodeproject.org/files/ENCFF312PBC/@@download/ENCFF312PBC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/5773e101-778d-4018-ae3d-f71d2d00568e/ENCFF312PBC.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF784DSJ bam alignments ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 1 ENCFF112OMC, ENCFF119DQL, ENCFF534QUD, ENCFF571XQU, ENCFF712JSX, ENCFF762PDO, ENCFF911BFY, ENCFF999VMV 5408239897 Anshul Kundaje, Stanford c7684d330e854738dcd395f83da5260b https://www.encodeproject.org/files/ENCFF784DSJ/@@download/ENCFF784DSJ.bam GRCh38 released s3://encode-public/2017/04/01/154bd03b-69cd-47ff-9fc3-232fb4076f6b/ENCFF784DSJ.bam mismatched file status, experiment not submitted to GEO ENCFF592ALR bam alignments ENCSR158XTU ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2 day DNA False 2017-10-10 GGR 2 ENCFF003LNW, ENCFF146NGQ, ENCFF153VMV, ENCFF210INV, ENCFF312PBC, ENCFF465NVI, ENCFF798VAO, ENCFF870CBM, ENCFF885ZCL, ENCFF909AYB 7184536428 Anshul Kundaje, Stanford 74eb061fbb4052f5c0b05a628c03e272 https://www.encodeproject.org/files/ENCFF592ALR/@@download/ENCFF592ALR.bam GRCh38 released s3://encode-public/2017/04/01/acc615ee-13d2-4d7c-8418-89b991df739e/ENCFF592ALR.bam mismatched file status, experiment not submitted to GEO ENCFF993MCA fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 2 ENCFF010KDO 1595104451 Michael Snyder, Stanford a197d7a91f0c368c16952aa5dc656bc2 https://www.encodeproject.org/files/ENCFF993MCA/@@download/ENCFF993MCA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/425bf8ce-a81c-4193-909e-3d23a42029ce/ENCFF993MCA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF010KDO fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 1 ENCFF993MCA 1480949727 Michael Snyder, Stanford a29f9a4620a83fab3be46c03806dd3d0 https://www.encodeproject.org/files/ENCFF010KDO/@@download/ENCFF010KDO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/ab6d0a6d-c74d-408d-a5e2-aefc3aba0df9/ENCFF010KDO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF931NXT fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 2 ENCFF797YCO 2323576275 Michael Snyder, Stanford df502634262f7d1116ff373a74e64369 https://www.encodeproject.org/files/ENCFF931NXT/@@download/ENCFF931NXT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/b82975a1-219f-4269-898b-1900e8a1ee03/ENCFF931NXT.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF071PMP fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 1 ENCFF487SKL 370950411 Michael Snyder, Stanford edaaa7e306cf9341c75b05d17e67ab09 https://www.encodeproject.org/files/ENCFF071PMP/@@download/ENCFF071PMP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/694460a4-2a95-45ac-bd71-26de0d9aabe8/ENCFF071PMP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF460PKS fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 1 ENCFF054RBW 1733538701 Michael Snyder, Stanford 74a89253457757c6373209a690226421 https://www.encodeproject.org/files/ENCFF460PKS/@@download/ENCFF460PKS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/a552acef-7bd4-4afe-a340-c11138bff3a7/ENCFF460PKS.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF935RPJ fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 1 ENCFF292XLV 2326423266 Michael Snyder, Stanford 58bb02bb81086e9d81ea74bd63232628 https://www.encodeproject.org/files/ENCFF935RPJ/@@download/ENCFF935RPJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/74b7656d-74bb-4c50-a65a-53001acaefdf/ENCFF935RPJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF292XLV fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 2 ENCFF935RPJ 2575024492 Michael Snyder, Stanford da810fe21f936aff0fcf7546abdbb60f https://www.encodeproject.org/files/ENCFF292XLV/@@download/ENCFF292XLV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/8eab3a4f-74ce-4aea-8ffb-018a4f984b7d/ENCFF292XLV.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF804VOY fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 1 5 76 paired-ended 2 ENCFF728OAW 566349199 Michael Snyder, Stanford fad6c4b688ed059a2a2141eb7c45f4be https://www.encodeproject.org/files/ENCFF804VOY/@@download/ENCFF804VOY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/3dc7dcac-fb68-491e-8cf3-25cab6cc514b/ENCFF804VOY.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF487SKL fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 2 ENCFF071PMP 403641208 Michael Snyder, Stanford 66d3d258b694fed0e20f6276c7577f6c https://www.encodeproject.org/files/ENCFF487SKL/@@download/ENCFF487SKL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/8b004851-9199-4ba2-9c5e-c7bac90b1cfb/ENCFF487SKL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF054RBW fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 2 ENCFF460PKS 1787949363 Michael Snyder, Stanford 2c24312de6bbc8b13fb279cc429ed437 https://www.encodeproject.org/files/ENCFF054RBW/@@download/ENCFF054RBW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/e3de381a-cbc1-4525-bf3b-da5f00694cfd/ENCFF054RBW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF728OAW fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 1 5 76 paired-ended 1 ENCFF804VOY 518294811 Michael Snyder, Stanford 01c37ca2d1f06c2ddf32f47015b96460 https://www.encodeproject.org/files/ENCFF728OAW/@@download/ENCFF728OAW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/cbfbd363-568e-40a8-a869-7dbee9945a16/ENCFF728OAW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF797YCO fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 1 ENCFF931NXT 2179812542 Michael Snyder, Stanford 6990fd113a379078e7f7a0ade1ca9ccf https://www.encodeproject.org/files/ENCFF797YCO/@@download/ENCFF797YCO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/3309b777-275b-4e66-952c-2342efae2ddf/ENCFF797YCO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF985VCR fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 1 6 76 paired-ended 1 ENCFF386WNU 855624795 Michael Snyder, Stanford dc0c8b9058a50693af1de25ac568d0fe https://www.encodeproject.org/files/ENCFF985VCR/@@download/ENCFF985VCR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/f1f6ae5c-b212-48cd-8da5-cb4ae018e342/ENCFF985VCR.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF386WNU fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 1 6 76 paired-ended 2 ENCFF985VCR 902104235 Michael Snyder, Stanford 7d302f259fc042f191df8fe88e32f312 https://www.encodeproject.org/files/ENCFF386WNU/@@download/ENCFF386WNU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/b1940762-49d7-45b8-8d9f-ca30875f370b/ENCFF386WNU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF431IEL fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 2 ENCFF100VJF 3617118200 Michael Snyder, Stanford 0d096d42fb50a21a4debab3f00114234 https://www.encodeproject.org/files/ENCFF431IEL/@@download/ENCFF431IEL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/9226de17-0cd3-4d19-9d15-e921e1030ce1/ENCFF431IEL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF100VJF fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 1 ENCFF431IEL 3452243267 Michael Snyder, Stanford 4f8234d1aebf49ccd40cc28469857ed7 https://www.encodeproject.org/files/ENCFF100VJF/@@download/ENCFF100VJF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/51cbb97b-24a3-4f17-a8c8-e76021dfd181/ENCFF100VJF.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF531KZI fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 1 ENCFF735LIR 1748427932 Michael Snyder, Stanford 8cc38259e67c5e72a765bf6e9d7ee33e https://www.encodeproject.org/files/ENCFF531KZI/@@download/ENCFF531KZI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/14b61ec6-6e18-4aa8-a697-2de7a853522c/ENCFF531KZI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF388LWT fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 2 ENCFF410KQY 1100464059 Michael Snyder, Stanford 1845bef50fc1c1bb0c6b92c188f3d017 https://www.encodeproject.org/files/ENCFF388LWT/@@download/ENCFF388LWT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d9f43ffc-b511-4ffc-a6eb-d0b92e107ea4/ENCFF388LWT.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF735LIR fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 2 ENCFF531KZI 1907657703 Michael Snyder, Stanford abf150cc53f3bd720f56139a3331bf0f https://www.encodeproject.org/files/ENCFF735LIR/@@download/ENCFF735LIR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/7b1b92db-b3be-4c8a-ab25-81bc64cebb99/ENCFF735LIR.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF410KQY fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 1 ENCFF388LWT 1050737882 Michael Snyder, Stanford 981869ca228732cf967609a06493a747 https://www.encodeproject.org/files/ENCFF410KQY/@@download/ENCFF410KQY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/9188f850-c6aa-4d70-88ad-b82f4721f80c/ENCFF410KQY.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF167WAP fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 1 ENCFF213QMW 790748377 Michael Snyder, Stanford 441fb5e5eb93484fc24ffe2ef3280e87 https://www.encodeproject.org/files/ENCFF167WAP/@@download/ENCFF167WAP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/045b599e-1516-4a77-a759-31775d62981b/ENCFF167WAP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF213QMW fastq reads ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 2 ENCFF167WAP 836708485 Michael Snyder, Stanford d7c8e30726152c417d5a5081e0410b4c https://www.encodeproject.org/files/ENCFF213QMW/@@download/ENCFF213QMW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/7462fa5f-6c92-4ad0-83e4-4b33bdd39de9/ENCFF213QMW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF049DWX bam alignments ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 2 ENCFF100VJF, ENCFF167WAP, ENCFF213QMW, ENCFF292XLV, ENCFF388LWT, ENCFF410KQY, ENCFF431IEL, ENCFF531KZI, ENCFF735LIR, ENCFF935RPJ 7439056409 Anshul Kundaje, Stanford 61fad82e8f4d4db7bb1dbe1673444fb8 https://www.encodeproject.org/files/ENCFF049DWX/@@download/ENCFF049DWX.bam GRCh38 released s3://encode-public/2017/04/01/309d2453-095a-4f12-824d-c6dd7d1c064d/ENCFF049DWX.bam mismatched file status, experiment not submitted to GEO ENCFF429JLL bam alignments ENCSR460DKJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 3 day DNA False 2017-10-10 GGR 1 ENCFF010KDO, ENCFF054RBW, ENCFF071PMP, ENCFF386WNU, ENCFF460PKS, ENCFF487SKL, ENCFF728OAW, ENCFF797YCO, ENCFF804VOY, ENCFF931NXT, ENCFF985VCR, ENCFF993MCA 5846349534 Anshul Kundaje, Stanford 2ec3ea46e77c547aa29cb78bc9c2dce7 https://www.encodeproject.org/files/ENCFF429JLL/@@download/ENCFF429JLL.bam GRCh38 released s3://encode-public/2017/04/01/06a5b0be-0ae5-44f9-b744-58f4544b4f20/ENCFF429JLL.bam mismatched file status, experiment not submitted to GEO ENCFF521ITF fastq reads ENCSR851SBY ATAC-seq UBERON:0000945 stomach tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF346CDZ 4500653597 Michael Snyder, Stanford 64a38bff415be87efc61d2a63dacf8c4 https://www.encodeproject.org/files/ENCFF521ITF/@@download/ENCFF521ITF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/84d16288-9736-4af5-a298-3bdded655fa0/ENCFF521ITF.fastq.gz experiment not submitted to GEO ENCFF346CDZ fastq reads ENCSR851SBY ATAC-seq UBERON:0000945 stomach tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF521ITF 4736024950 Michael Snyder, Stanford 9b138d252f4515d7c6c96034d435e850 https://www.encodeproject.org/files/ENCFF346CDZ/@@download/ENCFF346CDZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/6574fe31-5766-40d6-94b0-16f9010884da/ENCFF346CDZ.fastq.gz experiment not submitted to GEO ENCFF675QOY bam alignments ENCSR851SBY ATAC-seq UBERON:0000945 stomach tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF346CDZ, ENCFF521ITF 5930910427 Anshul Kundaje, Stanford 85e4ba19db10cfa0f75dfd66f5ef0c61 https://www.encodeproject.org/files/ENCFF675QOY/@@download/ENCFF675QOY.bam GRCh38 released s3://encode-public/2016/12/22/205e2227-e2f8-489f-8ee3-acb6a996f8b6/ENCFF675QOY.bam experiment not submitted to GEO ENCFF368VLY bigWig signal p-value ENCSR851SBY ATAC-seq UBERON:0000945 stomach tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF675QOY 1174000349 Anshul Kundaje, Stanford ae7151d7a23e1dac715f1edc6ad738d0 https://www.encodeproject.org/files/ENCFF368VLY/@@download/ENCFF368VLY.bigWig GRCh38 released s3://encode-public/2016/12/22/a658590c-4964-4f9f-9c62-90d8a00fa6a2/ENCFF368VLY.bigWig experiment not submitted to GEO ENCFF415RKU bigWig fold change over control ENCSR851SBY ATAC-seq UBERON:0000945 stomach tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF675QOY 1385037599 Anshul Kundaje, Stanford 4248853c99a6b9e3b77159319300b7de https://www.encodeproject.org/files/ENCFF415RKU/@@download/ENCFF415RKU.bigWig GRCh38 released s3://encode-public/2016/12/22/c7634c18-a080-4b59-911f-582cb74191a6/ENCFF415RKU.bigWig experiment not submitted to GEO ENCFF844GGH fastq reads ENCSR984HFU ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 0 ng/mL 0 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 1 ENCFF202BGK 1653203083 Manuel Garber, UMass 021e03cde5702497664425ede33f0302 SRA:SRR5210456 https://www.encodeproject.org/files/ENCFF844GGH/@@download/ENCFF844GGH.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/8d11a769-4676-450a-a497-868d8116080a/ENCFF844GGH.fastq.gz ENCFF588NME fastq reads ENCSR984HFU ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 0 ng/mL 0 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 2 1 42 paired-ended 1 ENCFF004ISY 1453983843 Manuel Garber, UMass 47677c98a01c75a0fa2ab07add9e80f9 SRA:SRR5210457 https://www.encodeproject.org/files/ENCFF588NME/@@download/ENCFF588NME.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/d89da0d5-156c-4b9b-bd9e-bc798860c09f/ENCFF588NME.fastq.gz ENCFF202BGK fastq reads ENCSR984HFU ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 0 ng/mL 0 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 2 ENCFF844GGH 1686402129 Manuel Garber, UMass a712f3c5db2446ac08925a20745556eb SRA:SRR5210456 https://www.encodeproject.org/files/ENCFF202BGK/@@download/ENCFF202BGK.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/e2f126e9-4eb3-4916-af08-59f5614d1d51/ENCFF202BGK.fastq.gz ENCFF004ISY fastq reads ENCSR984HFU ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 0 ng/mL 0 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 2 1 42 paired-ended 2 ENCFF588NME 1534281105 Manuel Garber, UMass 19a6039c0dc5303714e642deddf5037b SRA:SRR5210457 https://www.encodeproject.org/files/ENCFF004ISY/@@download/ENCFF004ISY.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/97466934-d49f-427a-9199-7fcf16208744/ENCFF004ISY.fastq.gz ENCFF753PKM fastq reads ENCSR012YAB ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF635ZQL 1558575722 Bing Ren, UCSD f9074d43fd9af86cb57d0c8c16d7eee0 https://www.encodeproject.org/files/ENCFF753PKM/@@download/ENCFF753PKM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/831579a8-682b-49c6-8b31-d6f38743cd02/ENCFF753PKM.fastq.gz experiment not submitted to GEO ENCFF058UWO fastq reads ENCSR012YAB ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF163UHB 2725524873 Bing Ren, UCSD ff81dff07b1e705e8594a47b3f5720fa https://www.encodeproject.org/files/ENCFF058UWO/@@download/ENCFF058UWO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/6d81bd89-af38-4cf6-8a69-a3a140bd78c8/ENCFF058UWO.fastq.gz experiment not submitted to GEO ENCFF163UHB fastq reads ENCSR012YAB ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF058UWO 2999751023 Bing Ren, UCSD 858601b96008cdc2d8b8c0a0d17cb315 https://www.encodeproject.org/files/ENCFF163UHB/@@download/ENCFF163UHB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/1e4b1cbd-c0f5-4d00-961b-0e3fe8c564a3/ENCFF163UHB.fastq.gz experiment not submitted to GEO ENCFF635ZQL fastq reads ENCSR012YAB ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF753PKM 1720610733 Bing Ren, UCSD 4648c77fc569180992a118460a3a765b https://www.encodeproject.org/files/ENCFF635ZQL/@@download/ENCFF635ZQL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/9925f6e2-2a1f-4f54-8e08-a2f7e2830c35/ENCFF635ZQL.fastq.gz experiment not submitted to GEO ENCFF520IWZ bam alignments ENCSR012YAB ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF635ZQL, ENCFF753PKM 3206325511 Anshul Kundaje, Stanford 628ead5d5f50461cb1fd65f89041c08e https://www.encodeproject.org/files/ENCFF520IWZ/@@download/ENCFF520IWZ.bam mm10 released s3://encode-public/2017/04/25/cac90e8a-3d88-4212-b736-51b07611bb3e/ENCFF520IWZ.bam experiment not submitted to GEO ENCFF668ELB bam alignments ENCSR012YAB ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF058UWO, ENCFF163UHB 5453641094 Anshul Kundaje, Stanford 5d88c553aa37740dcf450a8c331085bd https://www.encodeproject.org/files/ENCFF668ELB/@@download/ENCFF668ELB.bam mm10 released s3://encode-public/2017/04/25/4260a188-93f4-4531-a6dd-a64823281ab4/ENCFF668ELB.bam experiment not submitted to GEO ENCFF342EKU bigWig signal p-value ENCSR012YAB ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF668ELB 816913187 Anshul Kundaje, Stanford 5494dcce3f04d328696b7b57494d7803 https://www.encodeproject.org/files/ENCFF342EKU/@@download/ENCFF342EKU.bigWig mm10 released s3://encode-public/2017/04/25/e91066b6-4d71-41d4-bd40-47d750d7eb79/ENCFF342EKU.bigWig experiment not submitted to GEO ENCFF585ROH bigWig signal p-value ENCSR012YAB ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF520IWZ 549655631 Anshul Kundaje, Stanford 836c2b6b8dbbec2ad0261250e96e6323 https://www.encodeproject.org/files/ENCFF585ROH/@@download/ENCFF585ROH.bigWig mm10 released s3://encode-public/2017/04/25/2ef157db-2fd3-43f1-9686-d096db8f12e7/ENCFF585ROH.bigWig experiment not submitted to GEO ENCFF908LJW bigWig fold change over control ENCSR012YAB ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF520IWZ 687441083 Anshul Kundaje, Stanford 0734320dd4616d61f4dac695153caa4f https://www.encodeproject.org/files/ENCFF908LJW/@@download/ENCFF908LJW.bigWig mm10 released s3://encode-public/2017/04/26/6a5183a0-241b-41eb-b5ce-c7f57e5c0ea5/ENCFF908LJW.bigWig experiment not submitted to GEO ENCFF745RFR bigWig fold change over control ENCSR012YAB ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF668ELB 1162472356 Anshul Kundaje, Stanford d1e3f20ce9fda1cdb99126e09de067d3 https://www.encodeproject.org/files/ENCFF745RFR/@@download/ENCFF745RFR.bigWig mm10 released s3://encode-public/2017/04/26/480896d7-4531-4330-ba21-7e0211ffda6d/ENCFF745RFR.bigWig experiment not submitted to GEO ENCFF709CLT fastq reads ENCSR662KNY ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF213OUA 1976420771 Bing Ren, UCSD 6110c05c5c513d3cdbc021e3cb98e5a8 https://www.encodeproject.org/files/ENCFF709CLT/@@download/ENCFF709CLT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/6a8b1000-d66f-4243-a1d6-dc3fe1a661c6/ENCFF709CLT.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF761JHA fastq reads ENCSR662KNY ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF181OVJ 1030159432 Bing Ren, UCSD 936384399e77c22406ded1a8446ec2a0 https://www.encodeproject.org/files/ENCFF761JHA/@@download/ENCFF761JHA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/d96af155-3e3f-4773-8719-a2911857c3f8/ENCFF761JHA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF181OVJ fastq reads ENCSR662KNY ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF761JHA 1107295304 Bing Ren, UCSD 6a8e1a6b43278d829b580899322c9821 https://www.encodeproject.org/files/ENCFF181OVJ/@@download/ENCFF181OVJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/5e65a5ab-802a-41e7-aa9f-58268601503a/ENCFF181OVJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF213OUA fastq reads ENCSR662KNY ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF709CLT 1822039841 Bing Ren, UCSD 2379b1079ffe07a68a1724d2f2866cec https://www.encodeproject.org/files/ENCFF213OUA/@@download/ENCFF213OUA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/e5f0058d-4dc5-4eb0-ae17-c8bb2e2dbf47/ENCFF213OUA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF812DSG fastq reads ENCSR670REK ATAC-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF493RBR 5060889366 Michael Snyder, Stanford 49d3a256fb6306ae1e31be50470ae8b7 https://www.encodeproject.org/files/ENCFF812DSG/@@download/ENCFF812DSG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/06791b3c-e51c-489c-ad09-2fe2775f082c/ENCFF812DSG.fastq.gz experiment not submitted to GEO ENCFF493RBR fastq reads ENCSR670REK ATAC-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF812DSG 5427803072 Michael Snyder, Stanford a67a9953e3e1f8893ba5d693f694688b https://www.encodeproject.org/files/ENCFF493RBR/@@download/ENCFF493RBR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/af8f03fa-a0f9-40d6-ac40-d2c3a2c5050a/ENCFF493RBR.fastq.gz experiment not submitted to GEO ENCFF765DRX bam alignments ENCSR670REK ATAC-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF493RBR, ENCFF812DSG 6921152296 Anshul Kundaje, Stanford 605d023cee3a7944c6553207ad7aaf5c https://www.encodeproject.org/files/ENCFF765DRX/@@download/ENCFF765DRX.bam GRCh38 released s3://encode-public/2016/12/22/138b6996-0115-4271-b89d-2f8b643fa3fb/ENCFF765DRX.bam experiment not submitted to GEO ENCFF979ESC bigWig signal p-value ENCSR670REK ATAC-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF765DRX 1281929307 Anshul Kundaje, Stanford 31db2e8ca316d3cbc8f395b98f724c57 https://www.encodeproject.org/files/ENCFF979ESC/@@download/ENCFF979ESC.bigWig GRCh38 released s3://encode-public/2016/12/22/bb761089-f1d6-48bf-9433-2448297ce4ac/ENCFF979ESC.bigWig experiment not submitted to GEO ENCFF801KAR bigWig fold change over control ENCSR670REK ATAC-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF765DRX 1394567006 Anshul Kundaje, Stanford 1f9b8ea7a454c342cdf54a17311645f0 https://www.encodeproject.org/files/ENCFF801KAR/@@download/ENCFF801KAR.bigWig GRCh38 released s3://encode-public/2016/12/22/c4868376-5115-4724-9253-32338181ace5/ENCFF801KAR.bigWig experiment not submitted to GEO ENCFF513OIA fastq reads ENCSR201FIW ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF579WLS 2600898558 Michael Snyder, Stanford 30c27e257dd39fc8b2a9c3f008401181 https://www.encodeproject.org/files/ENCFF513OIA/@@download/ENCFF513OIA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/31/aae354c5-87b4-49ce-a511-79503b768640/ENCFF513OIA.fastq.gz experiment not submitted to GEO ENCFF579WLS fastq reads ENCSR201FIW ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF513OIA 2282380806 Michael Snyder, Stanford 8d5669a480f51f5fa5afe262bbe07fc9 https://www.encodeproject.org/files/ENCFF579WLS/@@download/ENCFF579WLS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/31/be3ff425-0384-49f4-bdb9-091d0035f34e/ENCFF579WLS.fastq.gz experiment not submitted to GEO ENCFF961DZL bigWig signal p-value ENCSR201FIW ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF608BWH 441266896 Anshul Kundaje, Stanford 00ace193aa72622e1e49e306ecf41e73 https://www.encodeproject.org/files/ENCFF961DZL/@@download/ENCFF961DZL.bigWig GRCh38 released s3://encode-public/2016/12/22/5a494572-b8f3-4906-bb7f-3524ecf680d7/ENCFF961DZL.bigWig experiment not submitted to GEO ENCFF608BWH bam alignments ENCSR201FIW ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF513OIA, ENCFF579WLS 2526382808 Anshul Kundaje, Stanford 070ea04028bdbbc45dc9668b0670d324 https://www.encodeproject.org/files/ENCFF608BWH/@@download/ENCFF608BWH.bam GRCh38 released s3://encode-public/2016/12/22/94a12449-ac93-467b-817b-428f45c7193b/ENCFF608BWH.bam experiment not submitted to GEO ENCFF879PJS bigWig fold change over control ENCSR201FIW ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF608BWH 532861279 Anshul Kundaje, Stanford 349ff4df31226ff9c05fc342dc06bf0b https://www.encodeproject.org/files/ENCFF879PJS/@@download/ENCFF879PJS.bigWig GRCh38 released s3://encode-public/2016/12/22/d5d9669c-54fa-43ae-9234-03bcb4a36880/ENCFF879PJS.bigWig experiment not submitted to GEO ENCFF574UTU fastq reads ENCSR404LLJ ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF331PSK 5242203464 Michael Snyder, Stanford 83f571af0aabeed10d029b4aac9c340d https://www.encodeproject.org/files/ENCFF574UTU/@@download/ENCFF574UTU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/10a8796b-215d-4422-9ba6-7b459bc37f8b/ENCFF574UTU.fastq.gz experiment not submitted to GEO ENCFF331PSK fastq reads ENCSR404LLJ ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF574UTU 5532860576 Michael Snyder, Stanford 5f2ccf14efef4587835a1ea7503f6a9e https://www.encodeproject.org/files/ENCFF331PSK/@@download/ENCFF331PSK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/a450ae4c-3a1c-425e-9bdc-f0b4f9c58e2f/ENCFF331PSK.fastq.gz experiment not submitted to GEO ENCFF845HFA bam alignments ENCSR404LLJ ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF331PSK, ENCFF574UTU 5888079043 Anshul Kundaje, Stanford 40c3e35c8b35e787347144eaf46c5d81 https://www.encodeproject.org/files/ENCFF845HFA/@@download/ENCFF845HFA.bam GRCh38 released s3://encode-public/2016/12/22/a24528dc-e16f-4900-9962-4178eb293224/ENCFF845HFA.bam experiment not submitted to GEO ENCFF405HIP bigWig signal p-value ENCSR404LLJ ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF845HFA 1066107765 Anshul Kundaje, Stanford 9885966a101de9a96bf58c5dfb583a58 https://www.encodeproject.org/files/ENCFF405HIP/@@download/ENCFF405HIP.bigWig GRCh38 released s3://encode-public/2016/12/22/c1e5c4fe-738d-4124-b7c8-b17e82077dd2/ENCFF405HIP.bigWig experiment not submitted to GEO ENCFF031MAM bigWig fold change over control ENCSR404LLJ ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF845HFA 1156098937 Anshul Kundaje, Stanford 9473f0b404012d854c4cdf3e15250b74 https://www.encodeproject.org/files/ENCFF031MAM/@@download/ENCFF031MAM.bigWig GRCh38 released s3://encode-public/2016/12/22/047460d1-f305-4ea9-9961-0939f19c6025/ENCFF031MAM.bigWig experiment not submitted to GEO ENCFF672EYN fastq reads ENCSR460BUL ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF981BBK 1076811806 Bing Ren, UCSD a2c28a2984bc162534098cde1f58af91 https://www.encodeproject.org/files/ENCFF672EYN/@@download/ENCFF672EYN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/fa7de8bc-2963-4c55-8ff7-c9f6ad6d1de7/ENCFF672EYN.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF981BBK fastq reads ENCSR460BUL ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF672EYN 1141793451 Bing Ren, UCSD 50b5c49d6b2689b0d05e7c54431c7b11 https://www.encodeproject.org/files/ENCFF981BBK/@@download/ENCFF981BBK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/a87d6749-9c86-4a1f-92ed-208dc3c0b667/ENCFF981BBK.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF948NPO fastq reads ENCSR460BUL ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF634JLT 916744858 Bing Ren, UCSD 2a91da915ce5bfed8c39aaf72ef4e902 https://www.encodeproject.org/files/ENCFF948NPO/@@download/ENCFF948NPO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/26584339-87f3-4b46-ae94-5bdc8d16dd91/ENCFF948NPO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF634JLT fastq reads ENCSR460BUL ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF948NPO 978796372 Bing Ren, UCSD 53e0520f2f9967b14ee418db25cb7991 https://www.encodeproject.org/files/ENCFF634JLT/@@download/ENCFF634JLT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/8aaae454-7d41-4fe9-9241-2d5401546c81/ENCFF634JLT.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF331IGF fastq reads ENCSR176BYZ ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF409GTD 1355972395 Bing Ren, UCSD b293561964000c5f66cd7660da70ff19 https://www.encodeproject.org/files/ENCFF331IGF/@@download/ENCFF331IGF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/b2e76268-ce8f-4baf-9919-0480e334cae9/ENCFF331IGF.fastq.gz experiment not submitted to GEO ENCFF071AXB fastq reads ENCSR176BYZ ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF628CBN 1416368776 Bing Ren, UCSD 7ec7d5c6ad5ae2a8704ecf7daa12e4f9 https://www.encodeproject.org/files/ENCFF071AXB/@@download/ENCFF071AXB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/d2a01503-ad34-4a57-941d-c43b8169b765/ENCFF071AXB.fastq.gz experiment not submitted to GEO ENCFF628CBN fastq reads ENCSR176BYZ ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF071AXB 1572448820 Bing Ren, UCSD d8222f2958ed61b731cb9eb05974af54 https://www.encodeproject.org/files/ENCFF628CBN/@@download/ENCFF628CBN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/6a556014-5966-4f1d-aade-1d461eedac4e/ENCFF628CBN.fastq.gz experiment not submitted to GEO ENCFF409GTD fastq reads ENCSR176BYZ ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF331IGF 1500571078 Bing Ren, UCSD 1adad9cf882101b7911fa5ee92230803 https://www.encodeproject.org/files/ENCFF409GTD/@@download/ENCFF409GTD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/5c707d33-ff33-4103-911b-2c36c8606d88/ENCFF409GTD.fastq.gz experiment not submitted to GEO ENCFF751DXE bam alignments ENCSR176BYZ ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF331IGF, ENCFF409GTD 2952687787 Anshul Kundaje, Stanford 522b14ca4523838abcd108ab1bcb8b73 https://www.encodeproject.org/files/ENCFF751DXE/@@download/ENCFF751DXE.bam mm10 released s3://encode-public/2017/04/25/a5b0d28d-001e-405e-bcbe-d10816d7817b/ENCFF751DXE.bam experiment not submitted to GEO ENCFF842OQL bam alignments ENCSR176BYZ ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF071AXB, ENCFF628CBN 3046561924 Anshul Kundaje, Stanford 517c5104c3264b7d5c07c56b7b150098 https://www.encodeproject.org/files/ENCFF842OQL/@@download/ENCFF842OQL.bam mm10 released s3://encode-public/2017/04/25/41b11f59-bf2e-429b-82c0-35ea610ca948/ENCFF842OQL.bam experiment not submitted to GEO ENCFF256DRT bigWig signal p-value ENCSR176BYZ ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF751DXE 471127131 Anshul Kundaje, Stanford f9d7c9e46c97b124493eb9c6dbbf9c90 https://www.encodeproject.org/files/ENCFF256DRT/@@download/ENCFF256DRT.bigWig mm10 released s3://encode-public/2017/04/25/3a76d7d7-3dee-492c-ab19-1afe56d7b4d6/ENCFF256DRT.bigWig experiment not submitted to GEO ENCFF189DBP bigWig signal p-value ENCSR176BYZ ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF842OQL 602822656 Anshul Kundaje, Stanford c818cd54724469bb2fb7754a1f03521d https://www.encodeproject.org/files/ENCFF189DBP/@@download/ENCFF189DBP.bigWig mm10 released s3://encode-public/2017/04/25/1906d98a-cfc4-48a5-8957-43fa665af91a/ENCFF189DBP.bigWig experiment not submitted to GEO ENCFF321AYT bigWig fold change over control ENCSR176BYZ ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF842OQL 691892298 Anshul Kundaje, Stanford 77042ae8bb809bc08ba958b2e0de5fd1 https://www.encodeproject.org/files/ENCFF321AYT/@@download/ENCFF321AYT.bigWig mm10 released s3://encode-public/2017/04/26/ef226454-1230-4e88-ae77-5806afb68fd6/ENCFF321AYT.bigWig experiment not submitted to GEO ENCFF333KVG bigWig fold change over control ENCSR176BYZ ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF751DXE 686044071 Anshul Kundaje, Stanford 81debcd8e6b6e569f37d137335cba53e https://www.encodeproject.org/files/ENCFF333KVG/@@download/ENCFF333KVG.bigWig mm10 released s3://encode-public/2017/04/26/b54e2fcc-177a-4411-b8a4-2f4b7fee1401/ENCFF333KVG.bigWig experiment not submitted to GEO ENCFF325FCQ fastq reads ENCSR889WQX ATAC-seq UBERON:0001870 frontal cortex tissue Mus musculus DNA see document ATAC buffer True 2017-06-21 ENCODE 1 1 100 single-ended 944855003 Barbara Wold, Caltech 1c1540c64a3bbfa0a551ffc0055d1a5d https://www.encodeproject.org/files/ENCFF325FCQ/@@download/ENCFF325FCQ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/0aac1212-95a5-4675-bcd4-2db39d517ef8/ENCFF325FCQ.fastq.gz experiment not submitted to GEO ENCFF439VSY fastq reads ENCSR889WQX ATAC-seq UBERON:0001870 frontal cortex tissue Mus musculus DNA see document ATAC buffer True 2017-06-21 ENCODE 1 1 50 single-ended 1231432398 Barbara Wold, Caltech abee6d8e00e86e8e06d0b7586492b68c https://www.encodeproject.org/files/ENCFF439VSY/@@download/ENCFF439VSY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/03880a75-1537-402c-9cbd-e23fb1dee109/ENCFF439VSY.fastq.gz experiment not submitted to GEO ENCFF683IQS fastq reads ENCSR889WQX ATAC-seq UBERON:0001870 frontal cortex tissue Mus musculus DNA see document ATAC buffer True 2017-06-21 ENCODE 1 1 50 single-ended 1225366149 Barbara Wold, Caltech b79a80f9c4ee3fa7442f9f18d485cb37 https://www.encodeproject.org/files/ENCFF683IQS/@@download/ENCFF683IQS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/6b87eff1-ad28-4de8-9eb9-d622d0ee03e0/ENCFF683IQS.fastq.gz experiment not submitted to GEO ENCFF744CHW fastq reads ENCSR889WQX ATAC-seq UBERON:0001870 frontal cortex tissue Mus musculus DNA see document ATAC buffer True 2017-06-21 ENCODE 1 1 100 single-ended 948655017 Barbara Wold, Caltech 28be13767bb74ef6bf3a7e9bd8b7c62f https://www.encodeproject.org/files/ENCFF744CHW/@@download/ENCFF744CHW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/1365b477-3e46-403b-afdd-d05d64b2609b/ENCFF744CHW.fastq.gz experiment not submitted to GEO ENCFF992TSA fastq reads ENCSR889WQX ATAC-seq UBERON:0001870 frontal cortex tissue Mus musculus DNA see document ATAC buffer True 2017-06-21 ENCODE 2 1 50 single-ended 1499259101 Barbara Wold, Caltech ec85e10b2d25a492cd626a4c4d077c00 https://www.encodeproject.org/files/ENCFF992TSA/@@download/ENCFF992TSA.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/4f9e4b72-8acf-411e-a554-a0384f2d5455/ENCFF992TSA.fastq.gz experiment not submitted to GEO ENCFF463QCX fastq reads ENCSR889WQX ATAC-seq UBERON:0001870 frontal cortex tissue Mus musculus DNA see document ATAC buffer True 2017-06-21 ENCODE 2 1 50 single-ended 1506131825 Barbara Wold, Caltech 902a16d1a657a320543fa453f3f9e545 https://www.encodeproject.org/files/ENCFF463QCX/@@download/ENCFF463QCX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/3b070a44-65a5-4a04-a004-1af59740415b/ENCFF463QCX.fastq.gz experiment not submitted to GEO ENCFF615NHS bigWig fold change over control ENCSR889WQX ATAC-seq UBERON:0001870 frontal cortex tissue Mus musculus DNA see document ATAC buffer True 2017-06-21 ENCODE 2 ENCFF209VTX 539921351 Anshul Kundaje, Stanford b396ee87d778e726e86ed444630dbcb9 https://www.encodeproject.org/files/ENCFF615NHS/@@download/ENCFF615NHS.bigWig mm10 released s3://encode-public/2017/05/11/cd72958c-1d67-4aa3-adcb-2ed3b76c8b52/ENCFF615NHS.bigWig experiment not submitted to GEO ENCFF209VTX bam alignments ENCSR889WQX ATAC-seq UBERON:0001870 frontal cortex tissue Mus musculus DNA see document ATAC buffer True 2017-06-21 ENCODE 2 ENCFF463QCX, ENCFF992TSA 2079396942 Anshul Kundaje, Stanford e97a4a2b74218873a930fc084044e2fd https://www.encodeproject.org/files/ENCFF209VTX/@@download/ENCFF209VTX.bam mm10 released s3://encode-public/2017/05/11/831f76ab-a073-4d79-8e71-f9e278e4b47e/ENCFF209VTX.bam experiment not submitted to GEO ENCFF018VSA bam alignments ENCSR889WQX ATAC-seq UBERON:0001870 frontal cortex tissue Mus musculus DNA see document ATAC buffer True 2017-06-21 ENCODE 1 ENCFF325FCQ, ENCFF439VSY, ENCFF683IQS, ENCFF744CHW 1946579976 Anshul Kundaje, Stanford 3e760dcc54e494b19b5c216cfa3b1b0b https://www.encodeproject.org/files/ENCFF018VSA/@@download/ENCFF018VSA.bam mm10 released s3://encode-public/2017/05/11/b767efc8-a209-46a4-9872-19b01ab5c92c/ENCFF018VSA.bam experiment not submitted to GEO ENCFF524OLZ bigWig signal p-value ENCSR889WQX ATAC-seq UBERON:0001870 frontal cortex tissue Mus musculus DNA see document ATAC buffer True 2017-06-21 ENCODE 1 ENCFF018VSA 405741372 Anshul Kundaje, Stanford 7827b53f44762504501c68bcbe6df987 https://www.encodeproject.org/files/ENCFF524OLZ/@@download/ENCFF524OLZ.bigWig mm10 released s3://encode-public/2017/05/11/b106d274-7ee1-4402-be22-6db01497fa8b/ENCFF524OLZ.bigWig experiment not submitted to GEO ENCFF434BCH bigWig signal p-value ENCSR889WQX ATAC-seq UBERON:0001870 frontal cortex tissue Mus musculus DNA see document ATAC buffer True 2017-06-21 ENCODE 2 ENCFF209VTX 519247386 Anshul Kundaje, Stanford 386ea8e2ac1a36733cd1094c4654cd1f https://www.encodeproject.org/files/ENCFF434BCH/@@download/ENCFF434BCH.bigWig mm10 released s3://encode-public/2017/05/11/2b428c7e-22d9-4261-8130-327165e5a051/ENCFF434BCH.bigWig experiment not submitted to GEO ENCFF878HWK bigWig fold change over control ENCSR889WQX ATAC-seq UBERON:0001870 frontal cortex tissue Mus musculus DNA see document ATAC buffer True 2017-06-21 ENCODE 1 ENCFF018VSA 397183906 Anshul Kundaje, Stanford cb03d9c620e183e5f43de0f41a2297f0 https://www.encodeproject.org/files/ENCFF878HWK/@@download/ENCFF878HWK.bigWig mm10 released s3://encode-public/2017/05/11/d016db80-84dd-4b3c-a28d-b64fca530168/ENCFF878HWK.bigWig experiment not submitted to GEO ENCFF138HVL fastq reads ENCSR062SVK ATAC-seq UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 2 ENCFF496OHD 2875682471 Michael Snyder, Stanford c7811ebe0d0d1c14591e862fc26cf58b https://www.encodeproject.org/files/ENCFF138HVL/@@download/ENCFF138HVL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/31/59cc243e-bed6-4962-8c81-e65d8b4de8b8/ENCFF138HVL.fastq.gz experiment not submitted to GEO ENCFF496OHD fastq reads ENCSR062SVK ATAC-seq UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 1 ENCFF138HVL 2667937784 Michael Snyder, Stanford 4eed3b6b5945264ec0061ddc7fc71ac4 https://www.encodeproject.org/files/ENCFF496OHD/@@download/ENCFF496OHD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/31/4008008f-59bc-4ffc-a602-303f39a647d1/ENCFF496OHD.fastq.gz experiment not submitted to GEO ENCFF469OER bam alignments ENCSR062SVK ATAC-seq UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF138HVL, ENCFF496OHD 3477566868 Anshul Kundaje, Stanford c04ab5f2125e6de9e55a009a77f1e7d3 https://www.encodeproject.org/files/ENCFF469OER/@@download/ENCFF469OER.bam GRCh38 released s3://encode-public/2017/02/09/d5dc8824-f2e5-43e6-81a2-cb9a6d819692/ENCFF469OER.bam experiment not submitted to GEO ENCFF332HRH bigWig signal p-value ENCSR062SVK ATAC-seq UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF469OER 679669144 Anshul Kundaje, Stanford c80df3241083a2ad2d4ae55ca1fa8994 https://www.encodeproject.org/files/ENCFF332HRH/@@download/ENCFF332HRH.bigWig GRCh38 released s3://encode-public/2017/02/09/5defc10b-236f-4168-b1d5-4d59d3b8bb87/ENCFF332HRH.bigWig experiment not submitted to GEO ENCFF087LJV bigWig fold change over control ENCSR062SVK ATAC-seq UBERON:0006631 right atrium auricular region tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF469OER 823669949 Anshul Kundaje, Stanford 50d0795e9b53bb0ef53155460a7676ef https://www.encodeproject.org/files/ENCFF087LJV/@@download/ENCFF087LJV.bigWig GRCh38 released s3://encode-public/2017/02/09/23b92b3e-e771-40c4-bef2-e6b1a9a0f8fd/ENCFF087LJV.bigWig experiment not submitted to GEO ENCFF535AXY fastq reads ENCSR793RAV ATAC-seq CL:0000765 erythroblast primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 48 single-ended 4704929256 Ross Hardison, PennState c2c8c2b2ae3faa9f1d78cab1d0e10d50 https://www.encodeproject.org/files/ENCFF535AXY/@@download/ENCFF535AXY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/9a2d8eed-1d2c-43cc-9f14-d2fe6c0b19bc/ENCFF535AXY.fastq.gz inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF637MAT fastq reads ENCSR793RAV ATAC-seq CL:0000765 erythroblast primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 48 single-ended 3245656675 Ross Hardison, PennState 4bf73fd2476147ce5953056b0ab59b92 https://www.encodeproject.org/files/ENCFF637MAT/@@download/ENCFF637MAT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/4413fc87-9622-49c1-9346-11569999684b/ENCFF637MAT.fastq.gz inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF199ZJX bam alignments ENCSR793RAV ATAC-seq CL:0000765 erythroblast primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF535AXY 3478859739 Ross Hardison, PennState 29f6596a9b209a7962fc2860a788bd42 https://www.encodeproject.org/files/ENCFF199ZJX/@@download/ENCFF199ZJX.bam mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/dbb03055-c1d4-4693-af26-8f9daae64065/ENCFF199ZJX.bam inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF737AUE bigWig signal of all reads ENCSR793RAV ATAC-seq CL:0000765 erythroblast primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF199ZJX 3317403991 Ross Hardison, PennState 4276685f24c8a9db64b6e6960319d5dc https://www.encodeproject.org/files/ENCFF737AUE/@@download/ENCFF737AUE.bigWig mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/5ed2861e-a744-4e1c-b6f8-84368ed2a2d2/ENCFF737AUE.bigWig inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF624WTN bigBed bed3+ peaks ENCSR793RAV ATAC-seq CL:0000765 erythroblast primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF199ZJX 1565544 Ross Hardison, PennState f3f6e80308d0fd933fba63bcbec924b9 https://www.encodeproject.org/files/ENCFF624WTN/@@download/ENCFF624WTN.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/7c920a13-a9b1-43c2-a269-aa6b23101fe5/ENCFF624WTN.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF464HYB bigBed narrowPeak open chromatin regions ENCSR793RAV ATAC-seq CL:0000765 erythroblast primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF199ZJX 10563623 Ross Hardison, PennState 319d54ea53baacd398f5c59c18d9207e https://www.encodeproject.org/files/ENCFF464HYB/@@download/ENCFF464HYB.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/ef4e0f2e-1cd3-4d68-83fd-debde96d8e8b/ENCFF464HYB.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF492OQT bigBed bed3+ peaks ENCSR793RAV ATAC-seq CL:0000765 erythroblast primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF535OJU 1497213 Ross Hardison, PennState 5e6ae27bed86092c956614e8ab26f9fc https://www.encodeproject.org/files/ENCFF492OQT/@@download/ENCFF492OQT.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/540bd88c-4002-4f93-a1de-4853942d6d7a/ENCFF492OQT.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF938TDY bigBed narrowPeak open chromatin regions ENCSR793RAV ATAC-seq CL:0000765 erythroblast primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF535OJU 8892025 Ross Hardison, PennState 1dc75ca739ec8ed512fa88c3172ef3c4 https://www.encodeproject.org/files/ENCFF938TDY/@@download/ENCFF938TDY.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/eeb6d6b9-b489-42d9-bc0d-9368b230311f/ENCFF938TDY.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF535OJU bam alignments ENCSR793RAV ATAC-seq CL:0000765 erythroblast primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF637MAT 2459600631 Ross Hardison, PennState 139d676a87b61cf98bf51875ab384baf https://www.encodeproject.org/files/ENCFF535OJU/@@download/ENCFF535OJU.bam mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/e42cd632-b160-432b-936c-99ba97aa5c74/ENCFF535OJU.bam inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF851PQK bigWig signal of all reads ENCSR793RAV ATAC-seq CL:0000765 erythroblast primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF535OJU 3304369573 Ross Hardison, PennState 9ffab3f148dd15466fca770d5fbb8513 https://www.encodeproject.org/files/ENCFF851PQK/@@download/ENCFF851PQK.bigWig mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/397f1c56-a5b4-4c00-a5f6-70d2cb1d1a8a/ENCFF851PQK.bigWig inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF473NPR bigBed narrowPeak filtered regions ENCSR793RAV ATAC-seq CL:0000765 erythroblast primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF464HYB, ENCFF790DJT 2711213 Ross Hardison, PennState 4a18a6590d0e741077e296a93199b56a https://www.encodeproject.org/files/ENCFF473NPR/@@download/ENCFF473NPR.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/abb46de9-09ea-4a52-a583-ef8250217e82/ENCFF473NPR.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF181AMY bigBed bed3+ filtered peaks ENCSR793RAV ATAC-seq CL:0000765 erythroblast primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF624WTN, ENCFF790DJT 1527979 Ross Hardison, PennState 6ed3fb17550dcc191c0db915077dde6d https://www.encodeproject.org/files/ENCFF181AMY/@@download/ENCFF181AMY.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/7c047160-ef13-4d4e-80cc-0c5dab2e8dea/ENCFF181AMY.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF616EWK bigBed bed3+ filtered peaks ENCSR793RAV ATAC-seq CL:0000765 erythroblast primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF492OQT, ENCFF790DJT 1456885 Ross Hardison, PennState c9d9156ae22ca32f1b2fc1cfaa0dcbdc https://www.encodeproject.org/files/ENCFF616EWK/@@download/ENCFF616EWK.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/bed10289-0be9-4915-9ef5-5a7b5b74cad5/ENCFF616EWK.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF403LRA bigBed narrowPeak filtered regions ENCSR793RAV ATAC-seq CL:0000765 erythroblast primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF790DJT, ENCFF938TDY 2733620 Ross Hardison, PennState ed231861f60191fc51f5fe700fa5f74a https://www.encodeproject.org/files/ENCFF403LRA/@@download/ENCFF403LRA.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/f09d6607-49da-4f7b-923f-5d22f14445fc/ENCFF403LRA.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF971BVP fastq reads ENCSR793RAV ATAC-seq CL:0000765 erythroblast primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 48 single-ended 1314934805 Ross Hardison, PennState 273d322bc5174afb6c1e92076f96f804 https://www.encodeproject.org/files/ENCFF971BVP/@@download/ENCFF971BVP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/27/7c5ecdf8-f7e1-42a0-8a39-36fc87dda570/ENCFF971BVP.fastq.gz inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF054MKL bigWig signal p-value ENCSR793RAV ATAC-seq CL:0000765 erythroblast primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF908UZL 321301911 Anshul Kundaje, Stanford 09c9733c0e2a9380db6764c4dbf1901d https://www.encodeproject.org/files/ENCFF054MKL/@@download/ENCFF054MKL.bigWig mm10 released s3://encode-public/2017/05/11/6b00f95e-20c0-4294-b757-ca137696c3cf/ENCFF054MKL.bigWig inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF321OJD bigWig fold change over control ENCSR793RAV ATAC-seq CL:0000765 erythroblast primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF908UZL 360858700 Anshul Kundaje, Stanford 6211c711c0655b9d87c3d91d7bb2ba73 https://www.encodeproject.org/files/ENCFF321OJD/@@download/ENCFF321OJD.bigWig mm10 released s3://encode-public/2017/05/11/0843d242-13e2-48b8-9604-1ffb133b8a11/ENCFF321OJD.bigWig inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF355WKH bigWig signal p-value ENCSR793RAV ATAC-seq CL:0000765 erythroblast primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF186ZOY 335321346 Anshul Kundaje, Stanford db2505b7a8032b7e06e90064fa0d36e8 https://www.encodeproject.org/files/ENCFF355WKH/@@download/ENCFF355WKH.bigWig mm10 released s3://encode-public/2017/05/11/fcc621a7-193d-4fbc-8bd5-3ee74a92a767/ENCFF355WKH.bigWig inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF908UZL bam alignments ENCSR793RAV ATAC-seq CL:0000765 erythroblast primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF535AXY 1522106618 Anshul Kundaje, Stanford 9a67887780a5a6c349f4b0caac752d01 https://www.encodeproject.org/files/ENCFF908UZL/@@download/ENCFF908UZL.bam mm10 released s3://encode-public/2017/05/11/24944f6c-0aad-465f-a253-b0332567788a/ENCFF908UZL.bam inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF186ZOY bam alignments ENCSR793RAV ATAC-seq CL:0000765 erythroblast primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF637MAT, ENCFF971BVP 1517215056 Anshul Kundaje, Stanford fb51669ba73b405cd75056dc3d9af84e https://www.encodeproject.org/files/ENCFF186ZOY/@@download/ENCFF186ZOY.bam mm10 released s3://encode-public/2017/05/11/45ffcbe9-af7a-4f16-a95f-1a94f30b671a/ENCFF186ZOY.bam inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF469FBE bigWig fold change over control ENCSR793RAV ATAC-seq CL:0000765 erythroblast primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF186ZOY 377590314 Anshul Kundaje, Stanford fc85537fb57c80c4e6dd9e71c6d770b5 https://www.encodeproject.org/files/ENCFF469FBE/@@download/ENCFF469FBE.bigWig mm10 released s3://encode-public/2017/05/11/b963f357-bd4c-47e8-90dc-cde2145ca66d/ENCFF469FBE.bigWig inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF433SND fastq reads ENCSR823ZCR ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF478QWN 3726348180 Michael Snyder, Stanford 6b9843222fef677c7a96ebc2ef20fb25 https://www.encodeproject.org/files/ENCFF433SND/@@download/ENCFF433SND.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/31/30ba5f0e-ec10-47fe-a388-dced85cee674/ENCFF433SND.fastq.gz experiment not submitted to GEO ENCFF478QWN fastq reads ENCSR823ZCR ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF433SND 3548714114 Michael Snyder, Stanford 7b3b842d32a04a1555da61c43421464d https://www.encodeproject.org/files/ENCFF478QWN/@@download/ENCFF478QWN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/31/f8fbe750-1e4e-470e-b2ea-bb62d995d243/ENCFF478QWN.fastq.gz experiment not submitted to GEO ENCFF768UMR bam alignments ENCSR823ZCR ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF433SND, ENCFF478QWN 3913592389 Anshul Kundaje, Stanford 6413c5282c845cbba1fc64a54f9f3425 https://www.encodeproject.org/files/ENCFF768UMR/@@download/ENCFF768UMR.bam GRCh38 released s3://encode-public/2016/12/22/246f630f-baf8-4896-9e1b-79fe72d3f7a8/ENCFF768UMR.bam experiment not submitted to GEO ENCFF143RZI bigWig signal p-value ENCSR823ZCR ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF768UMR 954659909 Anshul Kundaje, Stanford 0b2c5f7718aa1ab7f3cf9738f4dacbac https://www.encodeproject.org/files/ENCFF143RZI/@@download/ENCFF143RZI.bigWig GRCh38 released s3://encode-public/2016/12/22/f088f922-9da6-4e38-abe6-72777ef0c253/ENCFF143RZI.bigWig experiment not submitted to GEO ENCFF500FTH bigWig fold change over control ENCSR823ZCR ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF768UMR 931105644 Anshul Kundaje, Stanford cf7743d3042c771f15b994298a058648 https://www.encodeproject.org/files/ENCFF500FTH/@@download/ENCFF500FTH.bigWig GRCh38 released s3://encode-public/2016/12/22/5b9d6f05-2956-4de9-856e-98eb36530ae5/ENCFF500FTH.bigWig experiment not submitted to GEO ENCFF171RXE fastq reads ENCSR389CLN ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF144HIW 1480294928 Bing Ren, UCSD b17110c86642aa7e5ef03f3044288da8 https://www.encodeproject.org/files/ENCFF171RXE/@@download/ENCFF171RXE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/ad744da2-bce2-45f6-8bf9-5158babcb9bb/ENCFF171RXE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF144HIW fastq reads ENCSR389CLN ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF171RXE 1632865667 Bing Ren, UCSD f3eb6faa947f7586315fa2cdea14feec https://www.encodeproject.org/files/ENCFF144HIW/@@download/ENCFF144HIW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/a361c9d8-de1a-4ab1-8682-2e98c0a61779/ENCFF144HIW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF763EEB fastq reads ENCSR389CLN ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF765QFH 1164641284 Bing Ren, UCSD 0a40f8edcfc94a64fa909234d75753b6 https://www.encodeproject.org/files/ENCFF763EEB/@@download/ENCFF763EEB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/a46084c9-54dd-4316-bba8-8a5bf1360635/ENCFF763EEB.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF765QFH fastq reads ENCSR389CLN ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF763EEB 1267174227 Bing Ren, UCSD 470b55e6800a0fda1452983f475e75ff https://www.encodeproject.org/files/ENCFF765QFH/@@download/ENCFF765QFH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/a092dc68-5306-4091-9c52-b4f307301aae/ENCFF765QFH.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF310FXX fastq reads ENCSR831KAH ATAC-seq UBERON:0001323 tibial nerve tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 1 ENCFF420VKK 2803874924 Michael Snyder, Stanford f927d0332ff9b5df185d7511c0987644 https://www.encodeproject.org/files/ENCFF310FXX/@@download/ENCFF310FXX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/02/07/017ffc63-a6b0-456d-801b-f505ba1688b9/ENCFF310FXX.fastq.gz experiment not submitted to GEO ENCFF420VKK fastq reads ENCSR831KAH ATAC-seq UBERON:0001323 tibial nerve tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 2 ENCFF310FXX 3142394987 Michael Snyder, Stanford cf5056ae35f6e9c9c8b2ecdd853596dd https://www.encodeproject.org/files/ENCFF420VKK/@@download/ENCFF420VKK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/02/07/f5162bff-d0ce-457d-912b-eb8757551201/ENCFF420VKK.fastq.gz experiment not submitted to GEO ENCFF277DNH bam alignments ENCSR831KAH ATAC-seq UBERON:0001323 tibial nerve tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF310FXX, ENCFF420VKK 3508048403 Anshul Kundaje, Stanford a2fe3e44d6625412b6cd94c7e7510844 https://www.encodeproject.org/files/ENCFF277DNH/@@download/ENCFF277DNH.bam GRCh38 released s3://encode-public/2017/04/01/40683d40-b345-46e6-b529-2173aa4583bf/ENCFF277DNH.bam experiment not submitted to GEO ENCFF685LTS bigWig signal p-value ENCSR831KAH ATAC-seq UBERON:0001323 tibial nerve tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF277DNH 727469476 Anshul Kundaje, Stanford a9fc549220386e55be6125516b9c743c https://www.encodeproject.org/files/ENCFF685LTS/@@download/ENCFF685LTS.bigWig GRCh38 released s3://encode-public/2017/04/01/51dcb959-0aa8-4afc-9a19-c8419a09cf18/ENCFF685LTS.bigWig experiment not submitted to GEO ENCFF233YYJ bigWig fold change over control ENCSR831KAH ATAC-seq UBERON:0001323 tibial nerve tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF277DNH 844022497 Anshul Kundaje, Stanford c547598fade459231099e29bb3f236c7 https://www.encodeproject.org/files/ENCFF233YYJ/@@download/ENCFF233YYJ.bigWig GRCh38 released s3://encode-public/2017/04/01/907d6e44-0093-4ce8-b8f0-ea3e57782498/ENCFF233YYJ.bigWig experiment not submitted to GEO ENCFF416BZL fastq reads ENCSR371KFW ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF473REG 853331193 Bing Ren, UCSD 09834c6d05f9c5b785fc2f68717f2460 https://www.encodeproject.org/files/ENCFF416BZL/@@download/ENCFF416BZL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/d96ff654-0fab-4875-83ea-33230a54bed7/ENCFF416BZL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF473REG fastq reads ENCSR371KFW ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF416BZL 777652351 Bing Ren, UCSD 5c3b3f3af4411d92f5cf7dbb72efd12e https://www.encodeproject.org/files/ENCFF473REG/@@download/ENCFF473REG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/08a010f5-5cba-4811-b4e2-6b51fd0f80af/ENCFF473REG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF304CCF fastq reads ENCSR371KFW ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF778FWU 644676390 Bing Ren, UCSD f53ef98dde2e07e4ea50839f0e4fbe9a https://www.encodeproject.org/files/ENCFF304CCF/@@download/ENCFF304CCF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/65826817-2da2-401c-92cb-d5f8a1ad80aa/ENCFF304CCF.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF778FWU fastq reads ENCSR371KFW ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF304CCF 706971969 Bing Ren, UCSD bde30c05ecac88faeb3d7a92c78c4dc0 https://www.encodeproject.org/files/ENCFF778FWU/@@download/ENCFF778FWU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/df3271d9-0329-4a47-8b69-6e8c598911d8/ENCFF778FWU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF064NKM fastq reads ENCSR552ABC ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF100SXY 663640757 Bing Ren, UCSD 014225fad446c819b1dd2497f53ddf07 https://www.encodeproject.org/files/ENCFF064NKM/@@download/ENCFF064NKM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/c5b4e159-1f81-4dcd-afb3-653d15fed551/ENCFF064NKM.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF100SXY fastq reads ENCSR552ABC ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF064NKM 605909358 Bing Ren, UCSD 6877eac1217863d1731abc9de9de43e8 https://www.encodeproject.org/files/ENCFF100SXY/@@download/ENCFF100SXY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/f4cb9845-443d-48b9-9945-2de63a9de8c3/ENCFF100SXY.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF406EUS fastq reads ENCSR552ABC ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF559NSG 479002443 Bing Ren, UCSD d4e9306f7aa68f0f10922903dd0d10a9 https://www.encodeproject.org/files/ENCFF406EUS/@@download/ENCFF406EUS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/4d9df519-7526-471a-86c7-91436952908c/ENCFF406EUS.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF559NSG fastq reads ENCSR552ABC ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF406EUS 526116227 Bing Ren, UCSD c21c3cb26621b3ab69cfd33c66dda716 https://www.encodeproject.org/files/ENCFF559NSG/@@download/ENCFF559NSG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/25ebd98b-7709-43b4-b234-d6157e573985/ENCFF559NSG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF214ASZ bam alignments ENCSR288YMH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF419RSJ, ENCFF420ZSO, GRCh38_no_alt_analysis_set_GCA_000001405.15 1183539727 Tim Reddy, Duke c8edde3650aa60236976d1cfce6212ef https://www.encodeproject.org/files/ENCFF214ASZ/@@download/ENCFF214ASZ.bam GRCh38 released s3://encode-public/2018/03/28/84b8a82d-4e89-42c0-ad9d-93007b726f73/ENCFF214ASZ.bam ENCFF210BHM bam alignments ENCSR288YMH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF358LJV, ENCFF419RSJ, GRCh38_no_alt_analysis_set_GCA_000001405.15 1195933190 Tim Reddy, Duke a9ee05a1a0b6e2edb478826a30cbc01b https://www.encodeproject.org/files/ENCFF210BHM/@@download/ENCFF210BHM.bam GRCh38 released s3://encode-public/2018/03/28/53c8e456-9923-45ed-b9e8-166f2814e8ca/ENCFF210BHM.bam ENCFF307NLG bed narrowPeak peaks ENCSR288YMH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF210BHM 2327333 Tim Reddy, Duke d7b60f39fc175af6b4377dd87af74b06 https://www.encodeproject.org/files/ENCFF307NLG/@@download/ENCFF307NLG.bed.gz GRCh38 released s3://encode-public/2018/03/28/cd864562-9d99-461e-863f-5ab74e50229e/ENCFF307NLG.bed.gz ENCFF995SZM bigBed narrowPeak peaks ENCSR288YMH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF307NLG 5124407 Tim Reddy, Duke 2a65eef79456d2d530309871a1e7695b https://www.encodeproject.org/files/ENCFF995SZM/@@download/ENCFF995SZM.bigBed GRCh38 released s3://encode-public/2018/03/28/e3f12847-f996-4207-b84c-e302886ec1ed/ENCFF995SZM.bigBed ENCFF590QJA bam alignments ENCSR288YMH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF419RSJ, ENCFF834KFX, GRCh38_no_alt_analysis_set_GCA_000001405.15 1124547652 Tim Reddy, Duke c34e324c47d5f3b9fcf9fb0211dcd6d1 https://www.encodeproject.org/files/ENCFF590QJA/@@download/ENCFF590QJA.bam GRCh38 released s3://encode-public/2018/03/28/5e16198b-208c-4d5b-9a8e-285b420ab39d/ENCFF590QJA.bam ENCFF301UHA bed narrowPeak peaks ENCSR288YMH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF590QJA 2445509 Tim Reddy, Duke f0f95ab2bda7edcf51bc865376b0aad3 https://www.encodeproject.org/files/ENCFF301UHA/@@download/ENCFF301UHA.bed.gz GRCh38 released s3://encode-public/2018/03/28/0ba2c595-e345-4bd3-a71d-53f5ed55c1bd/ENCFF301UHA.bed.gz ENCFF723BGR bed narrowPeak peaks ENCSR288YMH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF214ASZ 1473817 Tim Reddy, Duke 0d9834f8bdb64b9ac5737e7090fce80c https://www.encodeproject.org/files/ENCFF723BGR/@@download/ENCFF723BGR.bed.gz GRCh38 released s3://encode-public/2018/03/28/f3dd574b-3bd4-4a90-9121-77847a72b67c/ENCFF723BGR.bed.gz ENCFF517MNM bigBed narrowPeak peaks ENCSR288YMH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF723BGR 3473577 Tim Reddy, Duke 5ff8e45a55ba62b634d81350c7d2320f https://www.encodeproject.org/files/ENCFF517MNM/@@download/ENCFF517MNM.bigBed GRCh38 released s3://encode-public/2018/03/28/dcfea236-123e-4de2-ba7e-8203ba3e53da/ENCFF517MNM.bigBed ENCFF935RQC bigBed narrowPeak peaks ENCSR288YMH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF301UHA 5413312 Tim Reddy, Duke f1973a2657bb11fbbf177cac1ce0087c https://www.encodeproject.org/files/ENCFF935RQC/@@download/ENCFF935RQC.bigBed GRCh38 released s3://encode-public/2018/03/28/26551b9f-2ddf-450f-837a-9d00fdd2c771/ENCFF935RQC.bigBed ENCFF834KFX fastq reads ENCSR288YMH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 51 single-ended 2595475193 Tim Reddy, Duke fad3934af4c0a4995f447e2b4519a465 SRA:SRR7140578 https://www.encodeproject.org/files/ENCFF834KFX/@@download/ENCFF834KFX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/03/28/14f1205b-5793-4a8d-b21b-10c4185d81c7/ENCFF834KFX.fastq.gz ENCFF441ACT bigWig signal of unique reads ENCSR288YMH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF214ASZ 289759444 Tim Reddy, Duke 8328ccd35e5ddd8a675caa10a4a4a502 https://www.encodeproject.org/files/ENCFF441ACT/@@download/ENCFF441ACT.bigWig GRCh38 released s3://encode-public/2018/03/28/c04045c0-5196-49d1-8496-59bcbaf00b67/ENCFF441ACT.bigWig ENCFF420ZSO fastq reads ENCSR288YMH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 51 single-ended 2010229885 Tim Reddy, Duke b1da3c71ba78ddd5526f05bb9c030127 SRA:SRR7140577 https://www.encodeproject.org/files/ENCFF420ZSO/@@download/ENCFF420ZSO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/03/28/b3f26b9e-5e3b-4106-b03d-4585af980cca/ENCFF420ZSO.fastq.gz ENCFF144WKW bigWig signal of unique reads ENCSR288YMH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF210BHM 290306136 Tim Reddy, Duke 226d2b0443ff01b105c0c37878536ab7 https://www.encodeproject.org/files/ENCFF144WKW/@@download/ENCFF144WKW.bigWig GRCh38 released s3://encode-public/2018/03/28/13c30db8-2d35-44a0-ab49-0352a19fcdfa/ENCFF144WKW.bigWig ENCFF358LJV fastq reads ENCSR288YMH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 51 single-ended 1995384607 Tim Reddy, Duke 3abc9a9c8277d85e85287396e94b91e9 SRA:SRR7140579 https://www.encodeproject.org/files/ENCFF358LJV/@@download/ENCFF358LJV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/03/28/c51d7b66-0164-46e5-8d32-9db7324a25e7/ENCFF358LJV.fastq.gz ENCFF708JWC bigWig signal of unique reads ENCSR288YMH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 4 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF590QJA 284332567 Tim Reddy, Duke 56ae1b62f4ae42897b5a201d866ede59 https://www.encodeproject.org/files/ENCFF708JWC/@@download/ENCFF708JWC.bigWig GRCh38 released s3://encode-public/2018/03/28/0f1fc32e-a9a2-4493-bad1-1bcc02884da3/ENCFF708JWC.bigWig ENCFF597SLV bam alignments ENCSR220ASC ATAC-seq EFO:0001086 A549 cell line Homo sapiens DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF419RSJ, ENCFF793VAW, GRCh38_no_alt_analysis_set_GCA_000001405.15 1131793941 Tim Reddy, Duke 6101f9543f5f6d654a444f88c5c582d5 https://www.encodeproject.org/files/ENCFF597SLV/@@download/ENCFF597SLV.bam GRCh38 released s3://encode-public/2018/03/28/80fe92f4-59de-456d-a9b8-6e6f54a08831/ENCFF597SLV.bam ENCFF248HDS bam alignments ENCSR220ASC ATAC-seq EFO:0001086 A549 cell line Homo sapiens DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF224EAV, ENCFF419RSJ, GRCh38_no_alt_analysis_set_GCA_000001405.15 1031953181 Tim Reddy, Duke 140ca65927ee29aed79249e261ab3253 https://www.encodeproject.org/files/ENCFF248HDS/@@download/ENCFF248HDS.bam GRCh38 released s3://encode-public/2018/03/28/49343a07-6753-4b4c-bfe0-481cbf293b79/ENCFF248HDS.bam ENCFF978DQZ bam alignments ENCSR220ASC ATAC-seq EFO:0001086 A549 cell line Homo sapiens DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF022FVS, ENCFF419RSJ, GRCh38_no_alt_analysis_set_GCA_000001405.15 1019837909 Tim Reddy, Duke 99166845972fa74c9230ab6930578918 https://www.encodeproject.org/files/ENCFF978DQZ/@@download/ENCFF978DQZ.bam GRCh38 released s3://encode-public/2018/03/28/ad12db6a-dbe9-4695-a6b1-e38ddd463d3f/ENCFF978DQZ.bam ENCFF348ZZP bed narrowPeak peaks ENCSR220ASC ATAC-seq EFO:0001086 A549 cell line Homo sapiens DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF597SLV 2029847 Tim Reddy, Duke ebab6082085a4eac0936224756c65c49 https://www.encodeproject.org/files/ENCFF348ZZP/@@download/ENCFF348ZZP.bed.gz GRCh38 released s3://encode-public/2018/03/28/62564156-f954-49db-b5a3-c35486ad34f5/ENCFF348ZZP.bed.gz ENCFF550DRF bed narrowPeak peaks ENCSR220ASC ATAC-seq EFO:0001086 A549 cell line Homo sapiens DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF978DQZ 1820727 Tim Reddy, Duke 82d58531a10f80ca32454b5edd1f8815 https://www.encodeproject.org/files/ENCFF550DRF/@@download/ENCFF550DRF.bed.gz GRCh38 released s3://encode-public/2018/03/28/f6361d13-4c9c-47fc-ba31-3011b0572ea1/ENCFF550DRF.bed.gz ENCFF615OFN bigBed narrowPeak peaks ENCSR220ASC ATAC-seq EFO:0001086 A549 cell line Homo sapiens DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF348ZZP 4513495 Tim Reddy, Duke 539c7ebd8bf9160e121f7898bf7ec651 https://www.encodeproject.org/files/ENCFF615OFN/@@download/ENCFF615OFN.bigBed GRCh38 released s3://encode-public/2018/03/28/999e8c53-77be-45d2-ad80-883af215c0df/ENCFF615OFN.bigBed ENCFF801YCD bed narrowPeak peaks ENCSR220ASC ATAC-seq EFO:0001086 A549 cell line Homo sapiens DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF248HDS 2212453 Tim Reddy, Duke ae11fbdfa6aa5bee61b79a4977b8599b https://www.encodeproject.org/files/ENCFF801YCD/@@download/ENCFF801YCD.bed.gz GRCh38 released s3://encode-public/2018/03/28/19a18a74-2875-4cdc-93f3-47aef1764a7b/ENCFF801YCD.bed.gz ENCFF801MPJ bigBed narrowPeak peaks ENCSR220ASC ATAC-seq EFO:0001086 A549 cell line Homo sapiens DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF550DRF 3423794 Tim Reddy, Duke a2d66cd18f0972f4038c6a123df2d315 https://www.encodeproject.org/files/ENCFF801MPJ/@@download/ENCFF801MPJ.bigBed GRCh38 released s3://encode-public/2018/03/28/8f6c6958-f93c-4aad-8705-0779d27c6c96/ENCFF801MPJ.bigBed ENCFF103COS bigWig signal of unique reads ENCSR220ASC ATAC-seq EFO:0001086 A549 cell line Homo sapiens DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF597SLV 279678628 Tim Reddy, Duke 39f77a1675fd241331326858916bcd9b https://www.encodeproject.org/files/ENCFF103COS/@@download/ENCFF103COS.bigWig GRCh38 released s3://encode-public/2018/03/28/4dc9995d-bc88-4fc1-9112-47c15adcdfb6/ENCFF103COS.bigWig ENCFF070PUA bigBed narrowPeak peaks ENCSR220ASC ATAC-seq EFO:0001086 A549 cell line Homo sapiens DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF801YCD 4029536 Tim Reddy, Duke 4b267cd9842c66f79b99d59bf7db66ca https://www.encodeproject.org/files/ENCFF070PUA/@@download/ENCFF070PUA.bigBed GRCh38 released s3://encode-public/2018/03/28/8411b032-b66e-48b3-b8c9-55ee6038dd31/ENCFF070PUA.bigBed ENCFF631HEX bigWig signal of unique reads ENCSR220ASC ATAC-seq EFO:0001086 A549 cell line Homo sapiens DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF978DQZ 248855284 Tim Reddy, Duke 3deecf3b0d838aa2781371de371b22fe https://www.encodeproject.org/files/ENCFF631HEX/@@download/ENCFF631HEX.bigWig GRCh38 released s3://encode-public/2018/03/28/012c4ced-4674-46e0-975c-30d0beec3c0e/ENCFF631HEX.bigWig ENCFF957GCK bigWig signal of unique reads ENCSR220ASC ATAC-seq EFO:0001086 A549 cell line Homo sapiens DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF248HDS 261142343 Tim Reddy, Duke 1ed15012d076e8e26b8f31c986bdee8f https://www.encodeproject.org/files/ENCFF957GCK/@@download/ENCFF957GCK.bigWig GRCh38 released s3://encode-public/2018/03/28/aa1fdad1-cd25-4436-83ee-6a505d0eb39e/ENCFF957GCK.bigWig ENCFF022FVS fastq reads ENCSR220ASC ATAC-seq EFO:0001086 A549 cell line Homo sapiens DNA 0.01% digitonin False 2018-04-23 GGR 1 1 51 single-ended 2022679180 Tim Reddy, Duke 173ccbf65d340f9a5f49e3f7087ada99 SRA:SRR7140571 https://www.encodeproject.org/files/ENCFF022FVS/@@download/ENCFF022FVS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/03/28/289c587c-9025-4048-86f2-5d0eca510b03/ENCFF022FVS.fastq.gz ENCFF793VAW fastq reads ENCSR220ASC ATAC-seq EFO:0001086 A549 cell line Homo sapiens DNA 0.01% digitonin False 2018-04-23 GGR 2 1 51 single-ended 2247410359 Tim Reddy, Duke 322ef1b1edcbf854e02c914b5ab081c6 SRA:SRR7140572 https://www.encodeproject.org/files/ENCFF793VAW/@@download/ENCFF793VAW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/03/28/fcd337b8-eb68-41dd-be1f-c188446aa240/ENCFF793VAW.fastq.gz ENCFF224EAV fastq reads ENCSR220ASC ATAC-seq EFO:0001086 A549 cell line Homo sapiens DNA 0.01% digitonin False 2018-04-23 GGR 3 1 51 single-ended 2562556862 Tim Reddy, Duke 08a203d867a3360de92cf50d03837f20 SRA:SRR7140573 https://www.encodeproject.org/files/ENCFF224EAV/@@download/ENCFF224EAV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/03/28/a5e6b7cd-be1e-474d-a5a2-1ca5388fea29/ENCFF224EAV.fastq.gz ENCFF491IFC fastq reads ENCSR566LZT ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 0 ng/mL 0 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 1 ENCFF315MTM 1467182193 Manuel Garber, UMass 1ca0c5355bcba3ae58fae06069c18044 SRA:SRR5210428 https://www.encodeproject.org/files/ENCFF491IFC/@@download/ENCFF491IFC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/11/314369c5-fade-4c4b-b74e-4f256d087336/ENCFF491IFC.fastq.gz unreplicated experiment ENCFF315MTM fastq reads ENCSR566LZT ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 0 ng/mL 0 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 2 ENCFF491IFC 1512949963 Manuel Garber, UMass 78804d6a5495e6480b559e82ae2db067 SRA:SRR5210428 https://www.encodeproject.org/files/ENCFF315MTM/@@download/ENCFF315MTM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/11/9c0949ab-c5bb-4da8-a1f9-9afc7ec46ac6/ENCFF315MTM.fastq.gz unreplicated experiment ENCFF158EIU fastq reads ENCSR628SXX ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 2 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 1 ENCFF072GQY 1666227272 Manuel Garber, UMass f6d9bd5e945705042ed12821d4fa9ea4 SRA:SRR5210426 https://www.encodeproject.org/files/ENCFF158EIU/@@download/ENCFF158EIU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/11/c2830e10-5832-4104-9132-3ab78ad8a442/ENCFF158EIU.fastq.gz unreplicated experiment ENCFF072GQY fastq reads ENCSR628SXX ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 2 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 2 ENCFF158EIU 1710227690 Manuel Garber, UMass a8da62c1f148ad222bc3d5a0393e09a1 SRA:SRR5210426 https://www.encodeproject.org/files/ENCFF072GQY/@@download/ENCFF072GQY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/11/68752489-3267-4b9a-a60b-191873ce7731/ENCFF072GQY.fastq.gz unreplicated experiment ENCFF547LGZ fastq reads ENCSR648JJT ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 30 minute DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 40 paired-ended 1 ENCFF889PEO 3315656542 Manuel Garber, UMass db78ef942f8ea35305d7453cfbf32e93 SRA:SRR5210425 https://www.encodeproject.org/files/ENCFF547LGZ/@@download/ENCFF547LGZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/12/d2c3c062-8eae-409c-9572-2e746a1d548c/ENCFF547LGZ.fastq.gz unreplicated experiment ENCFF889PEO fastq reads ENCSR648JJT ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 30 minute DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 40 paired-ended 2 ENCFF547LGZ 3401435967 Manuel Garber, UMass 5099dc360fb5cbe27da63cb8b352cb97 SRA:SRR5210425 https://www.encodeproject.org/files/ENCFF889PEO/@@download/ENCFF889PEO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/10/12/e5c5da0d-544a-459f-88ef-b6aa225b99b6/ENCFF889PEO.fastq.gz unreplicated experiment ENCFF553SEZ fastq reads ENCSR260ZIV ATAC-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF493REK 4515715649 Michael Snyder, Stanford 994472d2391c632f844d25c3d53a07a2 https://www.encodeproject.org/files/ENCFF553SEZ/@@download/ENCFF553SEZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/bf8e242a-c2cf-461a-933b-7e79af275b93/ENCFF553SEZ.fastq.gz experiment not submitted to GEO ENCFF493REK fastq reads ENCSR260ZIV ATAC-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF553SEZ 4873502529 Michael Snyder, Stanford a9d199c8e48483068c4492700c38efed https://www.encodeproject.org/files/ENCFF493REK/@@download/ENCFF493REK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/b10dffc1-69ea-4a24-8757-46bd63ece4b3/ENCFF493REK.fastq.gz experiment not submitted to GEO ENCFF293BRN bam alignments ENCSR260ZIV ATAC-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF493REK, ENCFF553SEZ 6487854280 Anshul Kundaje, Stanford 9b9a096a6b2d848489645e596e31021b https://www.encodeproject.org/files/ENCFF293BRN/@@download/ENCFF293BRN.bam GRCh38 released s3://encode-public/2016/12/22/f58103f6-0847-4a3a-a2a6-9e7f7e857051/ENCFF293BRN.bam experiment not submitted to GEO ENCFF734RVU bigWig signal p-value ENCSR260ZIV ATAC-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF293BRN 1457330627 Anshul Kundaje, Stanford 4db273979ea7daff192b8a275eb06e2c https://www.encodeproject.org/files/ENCFF734RVU/@@download/ENCFF734RVU.bigWig GRCh38 released s3://encode-public/2016/12/22/c77aab6c-4ff9-4ff0-a58c-a54501a0773f/ENCFF734RVU.bigWig experiment not submitted to GEO ENCFF152NUP bigWig fold change over control ENCSR260ZIV ATAC-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF293BRN 1549011598 Anshul Kundaje, Stanford 6a1eaa3ccecdce280a2b7d617afac985 https://www.encodeproject.org/files/ENCFF152NUP/@@download/ENCFF152NUP.bigWig GRCh38 released s3://encode-public/2016/12/22/dd766d9e-dd13-4003-9ffb-a313272f63d1/ENCFF152NUP.bigWig experiment not submitted to GEO ENCFF166GCN fastq reads ENCSR211OCS ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF713VTW 1381378592 Bing Ren, UCSD b6e289d3dc5066675df4a08c4ae71bb0 https://www.encodeproject.org/files/ENCFF166GCN/@@download/ENCFF166GCN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/6128a5d0-6759-4097-b8dd-079ad1ff6e84/ENCFF166GCN.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF073BZO fastq reads ENCSR211OCS ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF470CPP 2059908695 Bing Ren, UCSD 01b7ad48ddae8f14a0556da91afcb2e4 https://www.encodeproject.org/files/ENCFF073BZO/@@download/ENCFF073BZO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/48a08184-30ce-476d-99d6-584d12edabf9/ENCFF073BZO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF713VTW fastq reads ENCSR211OCS ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF166GCN 1222027595 Bing Ren, UCSD 8298a5c1b0cd22a944ea3d4308ce2457 https://www.encodeproject.org/files/ENCFF713VTW/@@download/ENCFF713VTW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/dccaa327-3213-4f8d-9b4f-1904643b94b8/ENCFF713VTW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF470CPP fastq reads ENCSR211OCS ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF073BZO 1872912017 Bing Ren, UCSD e16fe3a46af6dd07943311ab1add26ce https://www.encodeproject.org/files/ENCFF470CPP/@@download/ENCFF470CPP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/6b5f5679-63b5-4025-abd4-26c094a11d66/ENCFF470CPP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF476NYE fastq reads ENCSR154BXN ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF680STO 1174999855 Bing Ren, UCSD 8a25c4ee7072d0683414662d840457ff https://www.encodeproject.org/files/ENCFF476NYE/@@download/ENCFF476NYE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/c73f43da-0705-4e12-b25d-1e3ab322ea7c/ENCFF476NYE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF867CGI fastq reads ENCSR154BXN ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF194BBQ 1638660355 Bing Ren, UCSD 0d800e8c69cd1924107e8e2e9d790a3b https://www.encodeproject.org/files/ENCFF867CGI/@@download/ENCFF867CGI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/9bd2f6b3-fd96-4203-bafe-2e06725edfd5/ENCFF867CGI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF194BBQ fastq reads ENCSR154BXN ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF867CGI 1515237228 Bing Ren, UCSD 6c12ef959a7f83bafe8c3a28eab878b2 https://www.encodeproject.org/files/ENCFF194BBQ/@@download/ENCFF194BBQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/78a40141-e8f1-4a48-9389-816da3f05668/ENCFF194BBQ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF680STO fastq reads ENCSR154BXN ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF476NYE 1069590471 Bing Ren, UCSD 579ffbabd6937fdf59a1f74964223fa5 https://www.encodeproject.org/files/ENCFF680STO/@@download/ENCFF680STO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/f722ebab-e168-4738-8870-82cb33e4d277/ENCFF680STO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF349HIL bam alignments ENCSR265ZXX ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF419RSJ, ENCFF610JYD, GRCh38_no_alt_analysis_set_GCA_000001405.15 1176432206 Tim Reddy, Duke 7c8021b8654a1e4a8ef043da45402d5a https://www.encodeproject.org/files/ENCFF349HIL/@@download/ENCFF349HIL.bam GRCh38 released s3://encode-public/2018/03/28/fa1e7335-5c7a-4609-b026-2ef121c514b4/ENCFF349HIL.bam ENCFF739AIR bam alignments ENCSR265ZXX ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF124LBK, ENCFF419RSJ, GRCh38_no_alt_analysis_set_GCA_000001405.15 1142521195 Tim Reddy, Duke 32530a385a5d1a663c89ae0a45c483e6 https://www.encodeproject.org/files/ENCFF739AIR/@@download/ENCFF739AIR.bam GRCh38 released s3://encode-public/2018/03/28/e9f04617-45b7-4707-9de3-7ce14814df41/ENCFF739AIR.bam ENCFF805SKX bed narrowPeak peaks ENCSR265ZXX ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF349HIL 1859150 Tim Reddy, Duke 0f52f09a501d25110d03c62276cb65f7 https://www.encodeproject.org/files/ENCFF805SKX/@@download/ENCFF805SKX.bed.gz GRCh38 released s3://encode-public/2018/03/28/14070d8e-5ce5-4c31-bec7-985361fa321e/ENCFF805SKX.bed.gz ENCFF714SLY bam alignments ENCSR265ZXX ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF115PAE, ENCFF419RSJ, GRCh38_no_alt_analysis_set_GCA_000001405.15 1071711227 Tim Reddy, Duke c03e3201ebe6e572c2d3dc9bc64af09d https://www.encodeproject.org/files/ENCFF714SLY/@@download/ENCFF714SLY.bam GRCh38 released s3://encode-public/2018/03/28/2d7a8662-e297-4085-80d1-b151d1420a32/ENCFF714SLY.bam ENCFF316KZZ bed narrowPeak peaks ENCSR265ZXX ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF739AIR 1971351 Tim Reddy, Duke 6bde9940debfaa424b2b9fafda5cd0c8 https://www.encodeproject.org/files/ENCFF316KZZ/@@download/ENCFF316KZZ.bed.gz GRCh38 released s3://encode-public/2018/03/28/ff5e8371-da36-4edc-94a7-840cdee0ab22/ENCFF316KZZ.bed.gz ENCFF013HFS bed narrowPeak peaks ENCSR265ZXX ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF714SLY 1694534 Tim Reddy, Duke 590afd2bc6548f26373e700150086bd5 https://www.encodeproject.org/files/ENCFF013HFS/@@download/ENCFF013HFS.bed.gz GRCh38 released s3://encode-public/2018/03/28/29629aa1-a451-41e7-825d-74ab520f0910/ENCFF013HFS.bed.gz ENCFF031ULO bigBed narrowPeak peaks ENCSR265ZXX ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF805SKX 4198209 Tim Reddy, Duke 0089e4f82ce860b71b6dd8bb468bd7fc https://www.encodeproject.org/files/ENCFF031ULO/@@download/ENCFF031ULO.bigBed GRCh38 released s3://encode-public/2018/03/28/4fb30756-e3a2-4603-b259-6d81274f9ab0/ENCFF031ULO.bigBed ENCFF959XUO bigBed narrowPeak peaks ENCSR265ZXX ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF013HFS 3856249 Tim Reddy, Duke 56d69095c38ce4eab4f346fcf2485b24 https://www.encodeproject.org/files/ENCFF959XUO/@@download/ENCFF959XUO.bigBed GRCh38 released s3://encode-public/2018/03/28/40b0a5cb-d43c-47f7-8dfd-d7d7018fc2f3/ENCFF959XUO.bigBed ENCFF901ZXK bigBed narrowPeak peaks ENCSR265ZXX ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF316KZZ 4430522 Tim Reddy, Duke 5af33bc711db86b9cf9ffd1dedb4ac19 https://www.encodeproject.org/files/ENCFF901ZXK/@@download/ENCFF901ZXK.bigBed GRCh38 released 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2192555730 Tim Reddy, Duke 936dc29f4161b5349213c8612d261025 SRA:SRR7140574 https://www.encodeproject.org/files/ENCFF115PAE/@@download/ENCFF115PAE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/03/28/63de45fe-c3b0-430b-b9d1-78514e8ae750/ENCFF115PAE.fastq.gz ENCFF610JYD fastq reads ENCSR265ZXX ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 12 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 51 single-ended 2183902837 Tim Reddy, Duke 91b052fdf24f09a6ac7f6c7c0d3e956a SRA:SRR7140576 https://www.encodeproject.org/files/ENCFF610JYD/@@download/ENCFF610JYD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/03/28/18cefe45-bcb6-4c7d-99e9-0207dcd95810/ENCFF610JYD.fastq.gz ENCFF169QUZ fastq reads ENCSR079GOY ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF742CFJ 1373101909 Bing Ren, UCSD 46a8c4f99e64efaedf54e022395ff06d https://www.encodeproject.org/files/ENCFF169QUZ/@@download/ENCFF169QUZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/609763ff-3695-459f-bfbc-af933877342e/ENCFF169QUZ.fastq.gz experiment not submitted to GEO ENCFF780FQW fastq reads ENCSR079GOY ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF039HAM 1647646304 Bing Ren, UCSD 642016cc2a193eb1abe00b1146ee8db9 https://www.encodeproject.org/files/ENCFF780FQW/@@download/ENCFF780FQW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/385c253f-b9db-4d83-8c31-d19ce65a8fe0/ENCFF780FQW.fastq.gz experiment not submitted to GEO ENCFF039HAM fastq reads ENCSR079GOY ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF780FQW 1519750561 Bing Ren, UCSD d25ba3818da0297d1bdc3abd75ec8063 https://www.encodeproject.org/files/ENCFF039HAM/@@download/ENCFF039HAM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/fe4829d6-bd8d-4276-b154-460349db2444/ENCFF039HAM.fastq.gz experiment not submitted to GEO ENCFF742CFJ fastq reads ENCSR079GOY ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF169QUZ 1477019413 Bing Ren, UCSD 7882389f381d88acf9d4a80048f417e5 https://www.encodeproject.org/files/ENCFF742CFJ/@@download/ENCFF742CFJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/a7976a8c-43ba-471a-b7e9-7e149b6513ff/ENCFF742CFJ.fastq.gz experiment not submitted to GEO ENCFF708XJW bam alignments ENCSR079GOY ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF039HAM, ENCFF780FQW 2806997290 Anshul Kundaje, Stanford 1d3de533568e0c2a03de8a8d351d8949 https://www.encodeproject.org/files/ENCFF708XJW/@@download/ENCFF708XJW.bam mm10 released s3://encode-public/2017/04/25/b81c735e-c744-4a10-a899-1d66bde92ba4/ENCFF708XJW.bam experiment not submitted to GEO ENCFF927MBS bam alignments ENCSR079GOY ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF169QUZ, ENCFF742CFJ 2444146702 Anshul Kundaje, Stanford b5fead4a83f19140e509d4c9201e1eee https://www.encodeproject.org/files/ENCFF927MBS/@@download/ENCFF927MBS.bam mm10 released s3://encode-public/2017/04/25/eccbbb14-49a8-4ecf-9296-83eb120710b0/ENCFF927MBS.bam experiment not submitted to GEO ENCFF151CEN bigWig signal p-value ENCSR079GOY ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF927MBS 521371257 Anshul Kundaje, Stanford 58a75f4f9fa001c7498a63625264d971 https://www.encodeproject.org/files/ENCFF151CEN/@@download/ENCFF151CEN.bigWig mm10 released s3://encode-public/2017/04/25/19c60662-1b85-4a71-9dcc-4b32edcbc21c/ENCFF151CEN.bigWig experiment not submitted to GEO ENCFF488CRU bigWig signal p-value ENCSR079GOY ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF708XJW 484048899 Anshul Kundaje, Stanford c0e5f215373bb710f968ac08abf0f978 https://www.encodeproject.org/files/ENCFF488CRU/@@download/ENCFF488CRU.bigWig mm10 released s3://encode-public/2017/04/25/a8358af4-771f-4bb8-8a13-a40eeebd6179/ENCFF488CRU.bigWig experiment not submitted to GEO ENCFF769BOR bigWig fold change over control ENCSR079GOY ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF708XJW 692867121 Anshul Kundaje, Stanford 971f7c352346145004ad70c81a727ee9 https://www.encodeproject.org/files/ENCFF769BOR/@@download/ENCFF769BOR.bigWig mm10 released s3://encode-public/2017/04/26/3960fa98-3479-41c3-9613-273f00538ab5/ENCFF769BOR.bigWig experiment not submitted to GEO ENCFF267BRV bigWig fold change over control ENCSR079GOY ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF927MBS 586106859 Anshul Kundaje, Stanford 627905615d2d17753b280e33e7284345 https://www.encodeproject.org/files/ENCFF267BRV/@@download/ENCFF267BRV.bigWig mm10 released s3://encode-public/2017/04/26/815faf29-93bd-4dd7-937b-e1d2aa3fda4f/ENCFF267BRV.bigWig experiment not submitted to GEO ENCFF011MBI fastq reads ENCSR955JSO ATAC-seq UBERON:0008367 breast epithelium tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF626AST 4448005631 Michael Snyder, Stanford 7ea25feda3c741123c205a0c4611bf4b https://www.encodeproject.org/files/ENCFF011MBI/@@download/ENCFF011MBI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/8fa6d2b4-f2ab-4e5b-9049-8c2d744705a9/ENCFF011MBI.fastq.gz experiment not submitted to GEO ENCFF626AST fastq reads ENCSR955JSO ATAC-seq UBERON:0008367 breast epithelium tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF011MBI 4689058965 Michael Snyder, Stanford a17ebc989707c4fac7be2bd554e536fc https://www.encodeproject.org/files/ENCFF626AST/@@download/ENCFF626AST.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/f803abd0-d8f2-4049-9b69-f4fe294072b9/ENCFF626AST.fastq.gz experiment not submitted to GEO ENCFF656OYT bam alignments ENCSR955JSO ATAC-seq UBERON:0008367 breast epithelium tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF011MBI, ENCFF626AST 5887527394 Anshul Kundaje, Stanford 5745618bb3bfdbc81654ebcc925347a0 https://www.encodeproject.org/files/ENCFF656OYT/@@download/ENCFF656OYT.bam GRCh38 released s3://encode-public/2016/12/22/eb7d1fa9-100c-40ad-a40b-a079558314ec/ENCFF656OYT.bam experiment not submitted to GEO ENCFF035ICJ bigWig signal p-value ENCSR955JSO ATAC-seq UBERON:0008367 breast epithelium tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF656OYT 1256078877 Anshul Kundaje, Stanford ec74a206dc7803575480093e9d5a1fe2 https://www.encodeproject.org/files/ENCFF035ICJ/@@download/ENCFF035ICJ.bigWig GRCh38 released s3://encode-public/2016/12/22/ad56d6c9-a372-4096-9ef8-0906f23aa405/ENCFF035ICJ.bigWig experiment not submitted to GEO ENCFF555YLI bigWig fold change over control ENCSR955JSO ATAC-seq UBERON:0008367 breast epithelium tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF656OYT 1381401087 Anshul Kundaje, Stanford 8b39adab3e99579cf4a6a0dda9c2b6ae https://www.encodeproject.org/files/ENCFF555YLI/@@download/ENCFF555YLI.bigWig GRCh38 released s3://encode-public/2016/12/22/76d9a38f-a283-410b-9490-38868b2959d8/ENCFF555YLI.bigWig experiment not submitted to GEO ENCFF741MLW fastq reads ENCSR150RMQ ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF460ETY 956955097 Bing Ren, UCSD 6a280b56d2565c3abe1e597b1fede409 https://www.encodeproject.org/files/ENCFF741MLW/@@download/ENCFF741MLW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/961432e0-d896-4785-ac90-73ab12fbd2f5/ENCFF741MLW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF460ETY fastq reads ENCSR150RMQ ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF741MLW 1041246962 Bing Ren, UCSD bd9184667228d6a2e14da79fe5aaea39 https://www.encodeproject.org/files/ENCFF460ETY/@@download/ENCFF460ETY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/86c5c242-0267-4782-9121-eb0abd9f97b4/ENCFF460ETY.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF667CEX fastq reads ENCSR150RMQ ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF165UKX 1010309854 Bing Ren, UCSD d0ebb8a05fd6863f095c71946227ab00 https://www.encodeproject.org/files/ENCFF667CEX/@@download/ENCFF667CEX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/28625b13-9c86-4e19-b7cb-dd2f4786ce93/ENCFF667CEX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF165UKX fastq reads ENCSR150RMQ ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF667CEX 1098662849 Bing Ren, UCSD 0deeddc3fcc460ed841a4875f66d11c7 https://www.encodeproject.org/files/ENCFF165UKX/@@download/ENCFF165UKX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/c677ef41-dfbb-459e-a725-1d48307cd333/ENCFF165UKX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF629FRA fastq reads ENCSR204ZTY ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF222KJL 1110852007 Bing Ren, UCSD 76d4196f735ba4394e3620aaedfea851 https://www.encodeproject.org/files/ENCFF629FRA/@@download/ENCFF629FRA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/70f17839-2224-4990-9339-115eb135669f/ENCFF629FRA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF488EFS fastq reads ENCSR204ZTY ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF917DTZ 1011560105 Bing Ren, UCSD 53d81eb7007481b15e18a9076d3ef3ca https://www.encodeproject.org/files/ENCFF488EFS/@@download/ENCFF488EFS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/9653d7c7-d5e4-4838-b7f0-69b116b4e854/ENCFF488EFS.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF917DTZ fastq reads ENCSR204ZTY ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF488EFS 1063897061 Bing Ren, UCSD 4dcca6fb9432ab440fc74aa6a17d3914 https://www.encodeproject.org/files/ENCFF917DTZ/@@download/ENCFF917DTZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/69b9ee26-b8a4-46b7-b9de-86397688fd57/ENCFF917DTZ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF222KJL fastq reads ENCSR204ZTY ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF629FRA 1173436934 Bing Ren, UCSD 7c3feb29315a398a6acb1c0877eacdce https://www.encodeproject.org/files/ENCFF222KJL/@@download/ENCFF222KJL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/f4cca744-5cbc-49dc-a83f-41e942944b75/ENCFF222KJL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF187TFB fastq reads ENCSR554JQP ATAC-seq UBERON:0002037 cerebellum tissue Mus musculus DNA see document ATAC buffer True 2017-10-09 ENCODE 1 1 50 single-ended 799578323 Barbara Wold, Caltech 40ebfe07a0e16501026465719a047768 https://www.encodeproject.org/files/ENCFF187TFB/@@download/ENCFF187TFB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/25feb1e4-64e9-4db2-b721-33630a2a63c8/ENCFF187TFB.fastq.gz experiment not submitted to GEO ENCFF117BTA fastq reads ENCSR554JQP ATAC-seq UBERON:0002037 cerebellum tissue Mus musculus DNA see document ATAC buffer True 2017-10-09 ENCODE 1 1 50 single-ended 803413530 Barbara Wold, Caltech fb2eb5175f753b745797c4df643e3c79 https://www.encodeproject.org/files/ENCFF117BTA/@@download/ENCFF117BTA.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/ec06ed0c-8a8e-430d-a7e5-de33ac850e40/ENCFF117BTA.fastq.gz experiment not submitted to GEO ENCFF856AGF fastq reads ENCSR554JQP ATAC-seq UBERON:0002037 cerebellum tissue Mus musculus DNA see document ATAC buffer True 2017-10-09 ENCODE 2 1 50 single-ended 1152608729 Barbara Wold, Caltech a367d7fda26f04110eaaf43fa7e4af55 https://www.encodeproject.org/files/ENCFF856AGF/@@download/ENCFF856AGF.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/dfebd705-d278-43e7-b1a9-5c94bd21b601/ENCFF856AGF.fastq.gz experiment not submitted to GEO ENCFF606DRR fastq reads ENCSR554JQP ATAC-seq UBERON:0002037 cerebellum tissue Mus musculus DNA see document ATAC buffer True 2017-10-09 ENCODE 1 1 100 single-ended 1332339956 Barbara Wold, Caltech 4b704475f522a68f2d9b9eb1fc507af8 https://www.encodeproject.org/files/ENCFF606DRR/@@download/ENCFF606DRR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/8e7e2076-d86e-4604-bb33-f47a376f9ab4/ENCFF606DRR.fastq.gz experiment not submitted to GEO ENCFF300LZD fastq reads ENCSR554JQP ATAC-seq UBERON:0002037 cerebellum tissue Mus musculus DNA see document ATAC buffer True 2017-10-09 ENCODE 1 1 100 single-ended 1325534491 Barbara Wold, Caltech 6989c70d9bf9a4eff6e518a96f6988cc https://www.encodeproject.org/files/ENCFF300LZD/@@download/ENCFF300LZD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/7573c163-cc12-4c76-aa5d-29128d5e1157/ENCFF300LZD.fastq.gz experiment not submitted to GEO ENCFF896HKX fastq reads ENCSR554JQP ATAC-seq UBERON:0002037 cerebellum tissue Mus musculus DNA see document ATAC buffer True 2017-10-09 ENCODE 2 1 50 single-ended 1155025339 Barbara Wold, Caltech 8b790e8b4fc06c73126346ac738eb231 https://www.encodeproject.org/files/ENCFF896HKX/@@download/ENCFF896HKX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/8346508e-214f-4985-b81d-36b9c54a3a5b/ENCFF896HKX.fastq.gz experiment not submitted to GEO ENCFF046URS bam alignments ENCSR554JQP ATAC-seq UBERON:0002037 cerebellum tissue Mus musculus DNA see document ATAC buffer True 2017-10-09 ENCODE 2 ENCFF856AGF, ENCFF896HKX 1517853281 Anshul Kundaje, Stanford fef509557553d1dc7d13299f4cd2ae97 https://www.encodeproject.org/files/ENCFF046URS/@@download/ENCFF046URS.bam mm10 released s3://encode-public/2017/05/11/a51e54ed-8adf-49d4-83ff-087631589a06/ENCFF046URS.bam experiment not submitted to GEO ENCFF263KKI bam alignments ENCSR554JQP ATAC-seq UBERON:0002037 cerebellum tissue Mus musculus DNA see document ATAC buffer True 2017-10-09 ENCODE 1 ENCFF117BTA, ENCFF187TFB, ENCFF300LZD, ENCFF606DRR 2370822944 Anshul Kundaje, Stanford 80bad298824fe04e324dea749ceeb975 https://www.encodeproject.org/files/ENCFF263KKI/@@download/ENCFF263KKI.bam mm10 released s3://encode-public/2017/05/11/15374e85-d566-4d21-8c75-ac6c005360fa/ENCFF263KKI.bam experiment not submitted to GEO ENCFF324THC bigWig signal p-value ENCSR554JQP ATAC-seq UBERON:0002037 cerebellum tissue Mus musculus DNA see document ATAC buffer True 2017-10-09 ENCODE 2 ENCFF046URS 283292299 Anshul Kundaje, Stanford 62cf373ab8d90f2a53350bab8f6d52cd https://www.encodeproject.org/files/ENCFF324THC/@@download/ENCFF324THC.bigWig mm10 released s3://encode-public/2017/05/11/ea9c4a0f-234e-4387-9297-44856657e113/ENCFF324THC.bigWig experiment not submitted to GEO ENCFF793QZJ bigWig fold change over control ENCSR554JQP ATAC-seq UBERON:0002037 cerebellum tissue Mus musculus DNA see document ATAC buffer True 2017-10-09 ENCODE 2 ENCFF046URS 356096949 Anshul Kundaje, Stanford 8bb3888b6777dc3193113f2b8f4c7f8b https://www.encodeproject.org/files/ENCFF793QZJ/@@download/ENCFF793QZJ.bigWig mm10 released s3://encode-public/2017/05/11/ec42a240-32d7-4c70-bb86-296ab1157e3f/ENCFF793QZJ.bigWig experiment not submitted to GEO ENCFF674MTJ bigWig signal p-value ENCSR554JQP ATAC-seq UBERON:0002037 cerebellum tissue Mus musculus DNA see document ATAC buffer True 2017-10-09 ENCODE 1 ENCFF263KKI 313962046 Anshul Kundaje, Stanford c566ef13357a4e8f439b42cfcc6b6f74 https://www.encodeproject.org/files/ENCFF674MTJ/@@download/ENCFF674MTJ.bigWig mm10 released s3://encode-public/2017/05/11/1289e258-8478-442e-b148-ae2dcc372e74/ENCFF674MTJ.bigWig experiment not submitted to GEO ENCFF329SPM bigWig fold change over control ENCSR554JQP ATAC-seq UBERON:0002037 cerebellum tissue Mus musculus DNA see document ATAC buffer True 2017-10-09 ENCODE 1 ENCFF263KKI 455439142 Anshul Kundaje, Stanford 5c56488ed20db5f93af84f888fbc37fd https://www.encodeproject.org/files/ENCFF329SPM/@@download/ENCFF329SPM.bigWig mm10 released s3://encode-public/2017/05/11/951202bc-cc4d-49c3-923a-7cf6a320ce1a/ENCFF329SPM.bigWig experiment not 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GGR 2 1 ENCFF153HNH 4470573 Tim Reddy, Duke 1f38d6114370301511429aaa09404df6 https://www.encodeproject.org/files/ENCFF552YTX/@@download/ENCFF552YTX.bigBed GRCh38 released s3://encode-public/2018/03/28/f5c356b8-0ad3-438f-98f9-47e52124357d/ENCFF552YTX.bigBed ENCFF846JAO bed narrowPeak peaks ENCSR074AHH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF766EGP 1933224 Tim Reddy, Duke 7724788cfff0838e6de6523b2715c280 https://www.encodeproject.org/files/ENCFF846JAO/@@download/ENCFF846JAO.bed.gz GRCh38 released s3://encode-public/2018/03/28/8436d05e-6084-4540-813a-c079b2b731a0/ENCFF846JAO.bed.gz ENCFF153HNH bed narrowPeak peaks ENCSR074AHH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF426DGP 2025701 Tim Reddy, Duke 387684bdb76e537f08ad300008f61d17 https://www.encodeproject.org/files/ENCFF153HNH/@@download/ENCFF153HNH.bed.gz GRCh38 released s3://encode-public/2018/03/28/dd5d330e-47f4-444d-b0cb-fa179cc86289/ENCFF153HNH.bed.gz ENCFF198GUB bed narrowPeak peaks ENCSR074AHH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF350EWF 2065969 Tim Reddy, Duke 4f9903c85ccee046b75ce29955459b63 https://www.encodeproject.org/files/ENCFF198GUB/@@download/ENCFF198GUB.bed.gz GRCh38 released s3://encode-public/2018/03/28/08d985a5-a774-44c9-9b6a-1afb84b7e306/ENCFF198GUB.bed.gz ENCFF516KEW bigBed narrowPeak peaks ENCSR074AHH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF198GUB 3778444 Tim Reddy, Duke 44875f20b3eaecc61d248fea4ca070d7 https://www.encodeproject.org/files/ENCFF516KEW/@@download/ENCFF516KEW.bigBed GRCh38 released s3://encode-public/2018/03/28/e196b8e7-6a44-4828-b579-397f12f9e419/ENCFF516KEW.bigBed ENCFF793QVM bigWig signal of unique reads ENCSR074AHH ATAC-seq 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Duke b2e4777703ad5cf7823498d8d8a49804 https://www.encodeproject.org/files/ENCFF573YDE/@@download/ENCFF573YDE.bigWig GRCh38 released s3://encode-public/2018/03/28/64276eb5-2620-4a74-8722-afed858699d7/ENCFF573YDE.bigWig ENCFF799HXV fastq reads ENCSR074AHH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 51 single-ended 1888602830 Tim Reddy, Duke d4b723fbfb9e455206240c04383ae015 SRA:SRR7140564 https://www.encodeproject.org/files/ENCFF799HXV/@@download/ENCFF799HXV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/03/28/1f08c2ac-21a7-4851-9afb-db28114bb41f/ENCFF799HXV.fastq.gz ENCFF744SXE fastq reads ENCSR074AHH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 51 single-ended 2328837981 Tim Reddy, Duke 7fce9205aa04242623a03ef4e1522e3c SRA:SRR7140563 https://www.encodeproject.org/files/ENCFF744SXE/@@download/ENCFF744SXE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/03/28/60f71ff2-2204-4f95-a527-2f10757fba57/ENCFF744SXE.fastq.gz ENCFF888HBH fastq reads ENCSR074AHH ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 8 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 51 single-ended 2466960652 Tim Reddy, Duke acb43eeec93d86a5c92a646219344b9f SRA:SRR7140562 https://www.encodeproject.org/files/ENCFF888HBH/@@download/ENCFF888HBH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/03/28/cf5895e3-7a84-42f7-aee6-9b0206d588c7/ENCFF888HBH.fastq.gz ENCFF051QFS fastq reads ENCSR113MBR ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF085AWY 5369577024 Michael Snyder, Stanford 594ca6582e3a19cc9d8348198367ec24 https://www.encodeproject.org/files/ENCFF051QFS/@@download/ENCFF051QFS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/fcef8c51-3b5c-431a-8bc5-dfdab466c515/ENCFF051QFS.fastq.gz experiment not submitted to GEO ENCFF898MTS fastq reads ENCSR113MBR ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF228CZJ 1985999510 Michael Snyder, Stanford 036c55adaa82ddb93650bc8b6d27d1c4 https://www.encodeproject.org/files/ENCFF898MTS/@@download/ENCFF898MTS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/bbd063fb-5a52-405d-aab7-0cfbbc46e66e/ENCFF898MTS.fastq.gz experiment not submitted to GEO ENCFF085AWY fastq reads ENCSR113MBR ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF051QFS 4970821795 Michael Snyder, Stanford 26b591d5519fc3b9d86013d96198403c https://www.encodeproject.org/files/ENCFF085AWY/@@download/ENCFF085AWY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/9217b538-588b-401e-92db-a68f023c3785/ENCFF085AWY.fastq.gz experiment not submitted to GEO ENCFF228CZJ fastq reads ENCSR113MBR ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF898MTS 1900918389 Michael Snyder, Stanford df951e1d9d2c23d586a1ece27930ac8b https://www.encodeproject.org/files/ENCFF228CZJ/@@download/ENCFF228CZJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/d4ad9ded-298c-4b7e-bef7-a6a71a5763e6/ENCFF228CZJ.fastq.gz experiment not submitted to GEO ENCFF436NOT bam alignments ENCSR113MBR ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF051QFS, ENCFF085AWY, ENCFF228CZJ, ENCFF898MTS 9538419629 Anshul Kundaje, Stanford f2c07557b0ed6fa6f7dec0fb7b91e48f https://www.encodeproject.org/files/ENCFF436NOT/@@download/ENCFF436NOT.bam GRCh38 released s3://encode-public/2016/12/22/471d26b0-89bf-4463-96bf-2a260b4338ec/ENCFF436NOT.bam experiment not submitted to GEO ENCFF663AYS bigWig fold change over control ENCSR113MBR ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF436NOT 1558408590 Anshul Kundaje, Stanford 7aec3659eb4c9cd45c0c76ecb053d5a3 https://www.encodeproject.org/files/ENCFF663AYS/@@download/ENCFF663AYS.bigWig GRCh38 released s3://encode-public/2016/12/22/ff856bd1-f46c-4511-8f7f-dc3119f21400/ENCFF663AYS.bigWig experiment not submitted to GEO ENCFF971AWR bigWig signal p-value ENCSR113MBR ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF436NOT 1339518134 Anshul Kundaje, Stanford fbf8e56eb6321a0fd42f9c77b662b17f https://www.encodeproject.org/files/ENCFF971AWR/@@download/ENCFF971AWR.bigWig GRCh38 released s3://encode-public/2016/12/22/84d8af57-6036-4c05-b1c4-d70dbc352190/ENCFF971AWR.bigWig experiment not submitted to GEO ENCFF021GRI fastq reads ENCSR732OTZ ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF413HET 1618437152 Bing Ren, UCSD f39f9304525a7c87eda7f688b1d8f620 https://www.encodeproject.org/files/ENCFF021GRI/@@download/ENCFF021GRI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/18140f12-eb99-467f-8a58-7df67d4b1a88/ENCFF021GRI.fastq.gz experiment not submitted to GEO ENCFF573ZOR fastq reads ENCSR732OTZ ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF326PPN 1221251804 Bing Ren, UCSD bebbe2204d5a38d1b606310c24e8c6ab https://www.encodeproject.org/files/ENCFF573ZOR/@@download/ENCFF573ZOR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/f9c17821-b9e4-455a-b919-a3dc26c192cb/ENCFF573ZOR.fastq.gz experiment not submitted to GEO ENCFF413HET fastq reads ENCSR732OTZ ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF021GRI 1452735284 Bing Ren, UCSD fa073739cc8a8bfd8d3ec138a4b715fc https://www.encodeproject.org/files/ENCFF413HET/@@download/ENCFF413HET.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/3d697273-c460-47c9-bf3e-3f1c772a363e/ENCFF413HET.fastq.gz experiment not submitted to GEO ENCFF326PPN fastq reads ENCSR732OTZ ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF573ZOR 1328171926 Bing Ren, UCSD 6cfe574f1e3ae6aee32cbfad7ddb5c9b https://www.encodeproject.org/files/ENCFF326PPN/@@download/ENCFF326PPN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/f72e57d4-e94a-4d9c-b541-0aea34d88d2c/ENCFF326PPN.fastq.gz experiment not submitted to GEO ENCFF979TLW bam alignments ENCSR732OTZ ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF021GRI, ENCFF413HET 3058525170 Anshul Kundaje, Stanford 633fd7236cf36ad39df78f7010916029 https://www.encodeproject.org/files/ENCFF979TLW/@@download/ENCFF979TLW.bam mm10 released s3://encode-public/2017/04/25/c6c09789-f25d-4d1e-9066-9a80677ad483/ENCFF979TLW.bam experiment not submitted to GEO ENCFF525KUY bam alignments ENCSR732OTZ ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF326PPN, ENCFF573ZOR 2490453838 Anshul Kundaje, Stanford 85452ccd572a665b9857f8fca62fc8d2 https://www.encodeproject.org/files/ENCFF525KUY/@@download/ENCFF525KUY.bam mm10 released s3://encode-public/2017/04/25/2e09db4f-de5f-4608-ac75-1cb3f7a8d624/ENCFF525KUY.bam experiment not submitted to GEO ENCFF603UFF bigWig signal p-value ENCSR732OTZ ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF525KUY 558836556 Anshul Kundaje, Stanford 873dc826ea6f82be6360f273f753060e https://www.encodeproject.org/files/ENCFF603UFF/@@download/ENCFF603UFF.bigWig mm10 released s3://encode-public/2017/04/25/49d1429d-0357-4aca-94e7-fc45a8d71acc/ENCFF603UFF.bigWig experiment not submitted to GEO ENCFF046NEJ bigWig signal p-value ENCSR732OTZ ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF979TLW 504504792 Anshul Kundaje, Stanford c7b1848a449decf7bdad70f35a03960c https://www.encodeproject.org/files/ENCFF046NEJ/@@download/ENCFF046NEJ.bigWig mm10 released s3://encode-public/2017/04/25/849b6bb3-3cd8-4348-aeb6-855ec380912e/ENCFF046NEJ.bigWig experiment not submitted to GEO ENCFF196PJB bigWig fold change over control ENCSR732OTZ ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF979TLW 723684778 Anshul Kundaje, Stanford a1bf1c3a122d839b0a79678af7df3003 https://www.encodeproject.org/files/ENCFF196PJB/@@download/ENCFF196PJB.bigWig mm10 released s3://encode-public/2017/04/26/811d01b4-981d-4415-b0c8-bbb58df373d6/ENCFF196PJB.bigWig experiment not submitted to GEO ENCFF222FJN bigWig fold change over control ENCSR732OTZ ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF525KUY 617300896 Anshul Kundaje, Stanford ba6afc80bb5719c7e52360d0e4f998da https://www.encodeproject.org/files/ENCFF222FJN/@@download/ENCFF222FJN.bigWig mm10 released s3://encode-public/2017/04/26/241afee6-590b-4d0e-8542-30d8b18ec934/ENCFF222FJN.bigWig experiment not submitted to GEO ENCFF248PXW fastq reads ENCSR976LWP ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF825UHO 1705933839 Bing Ren, UCSD c9f3c42083fbbaecde63eeb6a2047700 https://www.encodeproject.org/files/ENCFF248PXW/@@download/ENCFF248PXW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/611e0fdd-e1d9-4b78-a252-029d599c6be9/ENCFF248PXW.fastq.gz experiment not submitted to GEO ENCFF906VXU fastq reads ENCSR976LWP ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF500SXI 1380745361 Bing Ren, UCSD b1e5d408b0c41e7626af79e9783b32cf https://www.encodeproject.org/files/ENCFF906VXU/@@download/ENCFF906VXU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/e6c876f5-8095-4749-b725-b75ca7e0e844/ENCFF906VXU.fastq.gz experiment not submitted to GEO ENCFF500SXI fastq reads ENCSR976LWP ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF906VXU 1508123311 Bing Ren, UCSD 7c23b37577b43bbda51649a7d874935b https://www.encodeproject.org/files/ENCFF500SXI/@@download/ENCFF500SXI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/843393c1-034c-4e65-856b-6c121d594512/ENCFF500SXI.fastq.gz experiment not submitted to GEO ENCFF825UHO fastq reads ENCSR976LWP ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF248PXW 1853136110 Bing Ren, UCSD 98e84c2be42030c067f158faff325149 https://www.encodeproject.org/files/ENCFF825UHO/@@download/ENCFF825UHO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/b87bd639-a03b-4fe4-a96b-a18dada28e46/ENCFF825UHO.fastq.gz experiment not submitted to GEO ENCFF695FLH bam alignments ENCSR976LWP ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF500SXI, ENCFF906VXU 2908005518 Anshul Kundaje, Stanford a5a225d5355ca5c455221e5f14c74a1f https://www.encodeproject.org/files/ENCFF695FLH/@@download/ENCFF695FLH.bam mm10 released s3://encode-public/2017/04/25/8893c5e7-611c-4b0b-bbe6-881ecf74fe62/ENCFF695FLH.bam experiment not submitted to GEO ENCFF572CMB bam alignments ENCSR976LWP ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF248PXW, ENCFF825UHO 3346793518 Anshul Kundaje, Stanford 35c5d40b60df85c4f25fc9ef4a8fa6bb https://www.encodeproject.org/files/ENCFF572CMB/@@download/ENCFF572CMB.bam mm10 released s3://encode-public/2017/04/25/7cc7e4fe-b033-44d1-90da-2a40ee2fe6e6/ENCFF572CMB.bam experiment not submitted to GEO ENCFF386ENN bigWig signal p-value ENCSR976LWP ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF695FLH 591139478 Anshul Kundaje, Stanford 6f55a48309a8473680ccc0b49e8e06d8 https://www.encodeproject.org/files/ENCFF386ENN/@@download/ENCFF386ENN.bigWig mm10 released s3://encode-public/2017/04/25/6d9ea829-c9d8-47b6-8c10-99b4711978c9/ENCFF386ENN.bigWig experiment not submitted to GEO ENCFF030APN bigWig signal p-value ENCSR976LWP ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF572CMB 550856147 Anshul Kundaje, Stanford 8748c3a9787b8ca58cd2fb41f8dd5c36 https://www.encodeproject.org/files/ENCFF030APN/@@download/ENCFF030APN.bigWig mm10 released s3://encode-public/2017/04/25/39d62ab3-767a-4a52-b665-cb5bd2e500bb/ENCFF030APN.bigWig experiment not submitted to GEO ENCFF487YTM bigWig fold change over control ENCSR976LWP ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF695FLH 676805362 Anshul Kundaje, Stanford bdbed1a5ed91f2167f292dc08d513b74 https://www.encodeproject.org/files/ENCFF487YTM/@@download/ENCFF487YTM.bigWig mm10 released s3://encode-public/2017/04/26/b6051de2-b648-40a9-bb4b-9fe0eb9117a9/ENCFF487YTM.bigWig experiment not submitted to GEO ENCFF933MGK bigWig fold change over control ENCSR976LWP ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF572CMB 802077642 Anshul Kundaje, Stanford d24f2d496f23590160149c1ad129dca7 https://www.encodeproject.org/files/ENCFF933MGK/@@download/ENCFF933MGK.bigWig mm10 released s3://encode-public/2017/04/26/ecd28970-009b-4aad-83d5-f3a75ef25c40/ENCFF933MGK.bigWig experiment not submitted to GEO ENCFF075UOA fastq reads ENCSR851EBF ATAC-seq UBERON:0002084 heart left ventricle tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF766IGD 2334246949 Michael Snyder, Stanford fe1f83adf12b1cdaeb3e6177fa9bfe47 https://www.encodeproject.org/files/ENCFF075UOA/@@download/ENCFF075UOA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/31/48ffbdf7-77d3-498f-b38b-1c42cb0d74a8/ENCFF075UOA.fastq.gz experiment not submitted to GEO ENCFF766IGD fastq reads ENCSR851EBF ATAC-seq UBERON:0002084 heart left ventricle tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF075UOA 2070030981 Michael Snyder, Stanford d12a684f8e08be977e45ea792304bdba https://www.encodeproject.org/files/ENCFF766IGD/@@download/ENCFF766IGD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/31/6f649600-3f95-433e-b6f8-cdfbe37f3e61/ENCFF766IGD.fastq.gz experiment not submitted to GEO ENCFF310VHO bam alignments ENCSR851EBF ATAC-seq UBERON:0002084 heart left ventricle tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF075UOA, ENCFF766IGD 2081453094 Anshul Kundaje, Stanford 6c960647126d67597cdda307a035a76e https://www.encodeproject.org/files/ENCFF310VHO/@@download/ENCFF310VHO.bam GRCh38 released s3://encode-public/2016/12/22/d172e67d-65e5-4521-bf62-1cd567b93c09/ENCFF310VHO.bam experiment not submitted to GEO ENCFF535HRH bigWig signal p-value ENCSR851EBF ATAC-seq UBERON:0002084 heart left ventricle tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF310VHO 400933175 Anshul Kundaje, Stanford f5873de484a9b519f94ed587279bbd2e https://www.encodeproject.org/files/ENCFF535HRH/@@download/ENCFF535HRH.bigWig GRCh38 released s3://encode-public/2016/12/22/1b98ade9-c681-4541-9bc7-d7be7a91ed27/ENCFF535HRH.bigWig experiment not submitted to GEO ENCFF996TBQ bigWig fold change over control ENCSR851EBF ATAC-seq UBERON:0002084 heart left ventricle tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF310VHO 487475585 Anshul Kundaje, Stanford ccc49e1613521dc9442955a5f88fd4b9 https://www.encodeproject.org/files/ENCFF996TBQ/@@download/ENCFF996TBQ.bigWig GRCh38 released s3://encode-public/2016/12/22/8cf8e176-53aa-4cdd-a8cf-4c328ab7b43f/ENCFF996TBQ.bigWig experiment not submitted to GEO ENCFF199CEQ fastq reads ENCSR229QKB ATAC-seq CL:0000553 megakaryocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 48 single-ended 5225816958 Ross Hardison, PennState 8e595a7b810d0efb9f93ad84474571ac https://www.encodeproject.org/files/ENCFF199CEQ/@@download/ENCFF199CEQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/2fa5b02a-cad1-4988-b033-2639c37122a0/ENCFF199CEQ.fastq.gz inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF343AEN fastq reads ENCSR229QKB ATAC-seq CL:0000553 megakaryocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 48 single-ended 4908555543 Ross Hardison, PennState a9c0a17cde6e1b92679c967847bba7f3 https://www.encodeproject.org/files/ENCFF343AEN/@@download/ENCFF343AEN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/05cecca2-7d59-41f2-824a-f375919c5e19/ENCFF343AEN.fastq.gz inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF120ZLL bigWig signal of all reads ENCSR229QKB ATAC-seq CL:0000553 megakaryocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF271JPW 3052090030 Ross Hardison, PennState 3e17e4d61601e574bbef6d73e9126869 https://www.encodeproject.org/files/ENCFF120ZLL/@@download/ENCFF120ZLL.bigWig mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/4d2c62f3-3bb3-42db-a52d-ea73337a199d/ENCFF120ZLL.bigWig inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF953OLX bigBed narrowPeak filtered regions ENCSR229QKB ATAC-seq CL:0000553 megakaryocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF790DJT, ENCFF862KLV 3197900 Ross Hardison, PennState 0f787d5e64e99f38e87c466e800d63c4 https://www.encodeproject.org/files/ENCFF953OLX/@@download/ENCFF953OLX.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/65a19a0a-341c-491b-a9dc-ef33a55d1006/ENCFF953OLX.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF471OUM bam alignments ENCSR229QKB ATAC-seq CL:0000553 megakaryocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF343AEN 3482739409 Ross Hardison, PennState 6696c2c8bff1fd04f31aae216ca45bad https://www.encodeproject.org/files/ENCFF471OUM/@@download/ENCFF471OUM.bam mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/6d1e65ee-eca0-4c41-b0a1-3d23aa459088/ENCFF471OUM.bam inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF187SEI bigBed bed3+ peaks ENCSR229QKB ATAC-seq CL:0000553 megakaryocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF271JPW 3522835 Ross Hardison, PennState 785f62553c33a6e40576697e51ebada8 https://www.encodeproject.org/files/ENCFF187SEI/@@download/ENCFF187SEI.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/4da9cc26-a26e-4cb4-80c4-ca3ffc163e4a/ENCFF187SEI.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF271JPW bam alignments ENCSR229QKB ATAC-seq CL:0000553 megakaryocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF199CEQ 3679401180 Ross Hardison, PennState 8282cd338ac9bc9017a8b3cbd00640c6 https://www.encodeproject.org/files/ENCFF271JPW/@@download/ENCFF271JPW.bam mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/5284f592-8ad7-4dcb-87d3-2d1fd55cb776/ENCFF271JPW.bam inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF140QBG bigBed bed3+ peaks ENCSR229QKB ATAC-seq CL:0000553 megakaryocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF471OUM 3483155 Ross Hardison, PennState a6ac2ebb0e2d76b1645a60ee8a6c7d23 https://www.encodeproject.org/files/ENCFF140QBG/@@download/ENCFF140QBG.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/1718f9de-b16e-4d15-999a-428217af8754/ENCFF140QBG.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF316GJK bigBed bed3+ filtered peaks ENCSR229QKB ATAC-seq CL:0000553 megakaryocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF140QBG, ENCFF790DJT 3433850 Ross Hardison, PennState 9317c966d9f003a8e74361f1bdc46d6f https://www.encodeproject.org/files/ENCFF316GJK/@@download/ENCFF316GJK.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/35b02b74-c7e5-42f7-bf30-7b699301304a/ENCFF316GJK.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF332MIK bigBed narrowPeak open chromatin regions ENCSR229QKB ATAC-seq CL:0000553 megakaryocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF471OUM 5868452 Ross Hardison, PennState d0bf5c4a6113ba145350cbb68e9b9f0a https://www.encodeproject.org/files/ENCFF332MIK/@@download/ENCFF332MIK.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/eff52699-774b-438e-90de-0671844659c2/ENCFF332MIK.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF862KLV bigBed narrowPeak open chromatin regions ENCSR229QKB ATAC-seq CL:0000553 megakaryocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF271JPW 5795618 Ross Hardison, PennState 71693b16c433dd5ae800118f8bb54840 https://www.encodeproject.org/files/ENCFF862KLV/@@download/ENCFF862KLV.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/0cfaea9e-2722-4c7a-8fdc-526e507a5069/ENCFF862KLV.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF024WNY bigWig signal of all reads ENCSR229QKB ATAC-seq CL:0000553 megakaryocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF471OUM 3092773330 Ross Hardison, PennState a6bb5d19586f60e457568f417c3ac976 https://www.encodeproject.org/files/ENCFF024WNY/@@download/ENCFF024WNY.bigWig mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/313f0fc5-1726-4a83-9e9b-62063385dce9/ENCFF024WNY.bigWig inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF954WOQ bigBed bed3+ filtered peaks ENCSR229QKB ATAC-seq CL:0000553 megakaryocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF187SEI, ENCFF790DJT 3471527 Ross Hardison, PennState 8647f341a5ba5bb45b1b4301ed1f5606 https://www.encodeproject.org/files/ENCFF954WOQ/@@download/ENCFF954WOQ.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/64d994ec-2f13-44ad-b915-6aa7862a7b55/ENCFF954WOQ.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF326PYV bigBed narrowPeak filtered regions ENCSR229QKB ATAC-seq CL:0000553 megakaryocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF332MIK, ENCFF790DJT 3186684 Ross Hardison, PennState f9b4ade6bc805c9d7743b7a900388f6c https://www.encodeproject.org/files/ENCFF326PYV/@@download/ENCFF326PYV.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/ca430f3e-80d9-41bf-8324-742bbec7f33a/ENCFF326PYV.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF551XEJ fastq reads ENCSR229QKB ATAC-seq CL:0000553 megakaryocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 48 single-ended 1210619712 Ross Hardison, PennState 8739608097ceead592e4132a05e49e85 https://www.encodeproject.org/files/ENCFF551XEJ/@@download/ENCFF551XEJ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/27/3fb18398-bb10-4aed-a4a3-defc68670382/ENCFF551XEJ.fastq.gz inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF492YEI bigWig signal p-value ENCSR229QKB ATAC-seq CL:0000553 megakaryocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF677QMX 385224567 Anshul Kundaje, Stanford 8d30175206693a508c3d3cb1939afc56 https://www.encodeproject.org/files/ENCFF492YEI/@@download/ENCFF492YEI.bigWig mm10 released s3://encode-public/2017/05/11/caace694-30df-422d-95bd-5ad68b18ff3f/ENCFF492YEI.bigWig inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF146AQF bigWig signal p-value ENCSR229QKB ATAC-seq CL:0000553 megakaryocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF735BCM 298895086 Anshul Kundaje, Stanford 0e34936c073469874863e5a82c449091 https://www.encodeproject.org/files/ENCFF146AQF/@@download/ENCFF146AQF.bigWig mm10 released s3://encode-public/2017/05/11/2f59edce-c942-48d8-9992-bc9eba11e8a1/ENCFF146AQF.bigWig inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF517RIA bigWig fold change over control ENCSR229QKB ATAC-seq CL:0000553 megakaryocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF677QMX 402600485 Anshul Kundaje, Stanford 76e4fd911ed80be4a2a599ef17f8fa97 https://www.encodeproject.org/files/ENCFF517RIA/@@download/ENCFF517RIA.bigWig mm10 released s3://encode-public/2017/05/11/f6947053-9980-45d3-81a8-2d1635befb7c/ENCFF517RIA.bigWig inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF164XWA bigWig fold change over control ENCSR229QKB ATAC-seq CL:0000553 megakaryocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF735BCM 319200083 Anshul Kundaje, Stanford bb02049df483dfec89b2b3787cf617aa https://www.encodeproject.org/files/ENCFF164XWA/@@download/ENCFF164XWA.bigWig mm10 released s3://encode-public/2017/05/11/9f179a2c-e813-4f12-bfc9-a4911c4bbb5e/ENCFF164XWA.bigWig inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF677QMX bam alignments ENCSR229QKB ATAC-seq CL:0000553 megakaryocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF343AEN, ENCFF551XEJ 1648409905 Anshul Kundaje, Stanford 87ab52d571fa92fb9e6148046b2f01e3 https://www.encodeproject.org/files/ENCFF677QMX/@@download/ENCFF677QMX.bam mm10 released s3://encode-public/2017/05/11/a13ba0d5-0560-465a-a598-8053b64445d6/ENCFF677QMX.bam inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF735BCM bam alignments ENCSR229QKB ATAC-seq CL:0000553 megakaryocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF199CEQ 1386301951 Anshul Kundaje, Stanford 60c6960aaad3c5c241b31c958b0e73b5 https://www.encodeproject.org/files/ENCFF735BCM/@@download/ENCFF735BCM.bam mm10 released s3://encode-public/2017/05/11/8ab37b66-259c-4935-bd3d-0fea2a707ee5/ENCFF735BCM.bam inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF888ZZV fastq reads ENCSR785NEL ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF288CVJ 1313473391 Bing Ren, UCSD 543db0c45d8bf6c615b11caf0ae51a22 https://www.encodeproject.org/files/ENCFF888ZZV/@@download/ENCFF888ZZV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/0c042c5d-b6b0-45f5-a885-2a088008f9df/ENCFF888ZZV.fastq.gz experiment not submitted to GEO ENCFF883SEZ fastq reads ENCSR785NEL ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF035OMK 2107472824 Bing Ren, UCSD 1688a8497f3e79c9a827401b1e3d07b2 https://www.encodeproject.org/files/ENCFF883SEZ/@@download/ENCFF883SEZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/8cd4d8ae-b269-4773-ad34-945d81d73a56/ENCFF883SEZ.fastq.gz experiment not submitted to GEO ENCFF035OMK fastq reads ENCSR785NEL ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF883SEZ 2286188047 Bing Ren, UCSD fd5a12db0b909be0d1f77364749335e8 https://www.encodeproject.org/files/ENCFF035OMK/@@download/ENCFF035OMK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/765e6a36-70a3-4034-8a9c-0a6c4ab66f65/ENCFF035OMK.fastq.gz experiment not submitted to GEO ENCFF288CVJ fastq reads ENCSR785NEL ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF888ZZV 1186023348 Bing Ren, UCSD bc46b105d0336afa42e7b9b8877ad9e7 https://www.encodeproject.org/files/ENCFF288CVJ/@@download/ENCFF288CVJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/12ba1a4d-8161-4c49-97e4-7ee04caf3127/ENCFF288CVJ.fastq.gz experiment not submitted to GEO ENCFF550NVA bam alignments ENCSR785NEL ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF288CVJ, ENCFF888ZZV 2399856423 Anshul Kundaje, Stanford 5ad648cdc8b911ba71fba09afe0a70fd https://www.encodeproject.org/files/ENCFF550NVA/@@download/ENCFF550NVA.bam mm10 released s3://encode-public/2017/04/25/a6a1b619-040a-4664-9eb8-e8298dfd6a85/ENCFF550NVA.bam experiment not submitted to GEO ENCFF007HEF bam alignments ENCSR785NEL ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF035OMK, ENCFF883SEZ 3713212532 Anshul Kundaje, Stanford 383ebb7289da325be3e74a4b71d1a601 https://www.encodeproject.org/files/ENCFF007HEF/@@download/ENCFF007HEF.bam mm10 released s3://encode-public/2017/04/25/34320739-8243-4e8d-8484-379edcfce7c5/ENCFF007HEF.bam experiment not submitted to GEO ENCFF305LXK bigWig signal p-value ENCSR785NEL ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF007HEF 716097598 Anshul Kundaje, Stanford 909d7365ce587340e9015f565a99cf2f https://www.encodeproject.org/files/ENCFF305LXK/@@download/ENCFF305LXK.bigWig mm10 released s3://encode-public/2017/04/25/9ac8b8e3-489a-46ea-8abf-8595ba0aa067/ENCFF305LXK.bigWig experiment not submitted to GEO ENCFF937NOO bigWig signal p-value ENCSR785NEL ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF550NVA 353412112 Anshul Kundaje, Stanford 0f6009fb9258903965be556989406d59 https://www.encodeproject.org/files/ENCFF937NOO/@@download/ENCFF937NOO.bigWig mm10 released s3://encode-public/2017/04/25/60df31b3-bbaf-43a7-9899-23030b4cf695/ENCFF937NOO.bigWig experiment not submitted to GEO ENCFF331KWS bigWig fold change over control ENCSR785NEL ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF550NVA 551605613 Anshul Kundaje, Stanford 863884b608db497d5acfb67710cc1ab0 https://www.encodeproject.org/files/ENCFF331KWS/@@download/ENCFF331KWS.bigWig mm10 released s3://encode-public/2017/04/26/978a0a45-d3f2-4e59-b5c8-e74c2fde7d71/ENCFF331KWS.bigWig experiment not submitted to GEO ENCFF778NIX bigWig fold change over control ENCSR785NEL ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF007HEF 841278319 Anshul Kundaje, Stanford 5935da0e93cc07ba2c051ccd4548208d https://www.encodeproject.org/files/ENCFF778NIX/@@download/ENCFF778NIX.bigWig mm10 released s3://encode-public/2017/04/26/3ddd5580-5519-4615-8fff-78e27daf50ab/ENCFF778NIX.bigWig experiment not submitted to GEO ENCFF326XJM fastq reads ENCSR337UIU ATAC-seq UBERON:0000945 stomach tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF300KHX 5143071720 Michael Snyder, Stanford 3ccdc270eea6605ee1df99eab9b18728 https://www.encodeproject.org/files/ENCFF326XJM/@@download/ENCFF326XJM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/145c7583-a995-468b-817c-281786ca3bd9/ENCFF326XJM.fastq.gz experiment not submitted to GEO ENCFF300KHX fastq reads ENCSR337UIU ATAC-seq UBERON:0000945 stomach tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF326XJM 4905331399 Michael Snyder, Stanford 0fc0e67ed3d6e7a87970c95dbb118e43 https://www.encodeproject.org/files/ENCFF300KHX/@@download/ENCFF300KHX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/c8cb3454-f8ae-4339-8ddf-25aba6ecdf2b/ENCFF300KHX.fastq.gz experiment not submitted to GEO ENCFF069SZE bam alignments ENCSR337UIU ATAC-seq UBERON:0000945 stomach tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF300KHX, ENCFF326XJM 5840429308 Anshul Kundaje, Stanford 588f1f67b98a2ff91bddd0d97512587d https://www.encodeproject.org/files/ENCFF069SZE/@@download/ENCFF069SZE.bam GRCh38 released s3://encode-public/2016/12/13/45fc6bad-a576-4d95-b646-9f93a378a4dd/ENCFF069SZE.bam experiment not submitted to GEO ENCFF492WGC bigWig signal p-value ENCSR337UIU ATAC-seq UBERON:0000945 stomach tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF069SZE 783877090 Anshul Kundaje, Stanford 4decbb66b151a86761e9e6b6537f373e https://www.encodeproject.org/files/ENCFF492WGC/@@download/ENCFF492WGC.bigWig GRCh38 released s3://encode-public/2016/12/13/7d83ddea-ca64-4fd9-b6e4-6766b8600773/ENCFF492WGC.bigWig experiment not submitted to GEO ENCFF873ASN bigWig fold change over control ENCSR337UIU ATAC-seq UBERON:0000945 stomach tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF069SZE 1239325972 Anshul Kundaje, Stanford 96b306f589157dc4ff77fd4f14425602 https://www.encodeproject.org/files/ENCFF873ASN/@@download/ENCFF873ASN.bigWig GRCh38 released s3://encode-public/2016/12/13/51a14934-6aa6-4447-a600-5cb59376a900/ENCFF873ASN.bigWig experiment not submitted to GEO ENCFF215WAD fastq reads ENCSR312LQX ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF971XEA 2810400170 Bing Ren, UCSD a1404d340f0a37a429443764ebf53603 https://www.encodeproject.org/files/ENCFF215WAD/@@download/ENCFF215WAD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/4b5b6b9b-9dc7-4d2e-b9a9-960df105ebc5/ENCFF215WAD.fastq.gz experiment not submitted to GEO ENCFF131VHT fastq reads ENCSR312LQX ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF547YID 1387608882 Bing Ren, UCSD ee52204ee56d6c21a02a6ed462c03221 https://www.encodeproject.org/files/ENCFF131VHT/@@download/ENCFF131VHT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/a2e1f588-081c-4d38-9fde-df5c6b8ea134/ENCFF131VHT.fastq.gz experiment not submitted to GEO ENCFF971XEA fastq reads ENCSR312LQX ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF215WAD 2610878575 Bing Ren, UCSD b518a97ebaa4777a808f7d8341769631 https://www.encodeproject.org/files/ENCFF971XEA/@@download/ENCFF971XEA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/bce9783b-84c7-4bd0-90b1-4202a8ba9600/ENCFF971XEA.fastq.gz experiment not submitted to GEO ENCFF547YID fastq reads ENCSR312LQX ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF131VHT 1285632948 Bing Ren, UCSD 889e9b640a011d444d104f76fa29b3ec https://www.encodeproject.org/files/ENCFF547YID/@@download/ENCFF547YID.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/7b1d6363-19c3-4943-8b9d-c04085a75143/ENCFF547YID.fastq.gz experiment not submitted to GEO ENCFF873VGR bam alignments ENCSR312LQX ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF131VHT, ENCFF547YID 2795255623 Anshul Kundaje, Stanford e920933d58d39bc9898fb2e00700925b https://www.encodeproject.org/files/ENCFF873VGR/@@download/ENCFF873VGR.bam mm10 released s3://encode-public/2017/04/25/4b08f3bd-438a-4c29-8461-959e403fca91/ENCFF873VGR.bam experiment not submitted to GEO ENCFF597GFP bam alignments ENCSR312LQX ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF215WAD, ENCFF971XEA 4578751656 Anshul Kundaje, Stanford 831bfb6e8bca350f3f4548fcf5b9f69f https://www.encodeproject.org/files/ENCFF597GFP/@@download/ENCFF597GFP.bam mm10 released s3://encode-public/2017/04/25/c93b97da-765f-4992-b7b6-7cc44206abfc/ENCFF597GFP.bam experiment not submitted to GEO ENCFF423KPF bigWig signal p-value ENCSR312LQX ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF873VGR 424359619 Anshul Kundaje, Stanford aba0958e4f19d198110c8b257a3deb00 https://www.encodeproject.org/files/ENCFF423KPF/@@download/ENCFF423KPF.bigWig mm10 released s3://encode-public/2017/04/25/426b6a49-868d-4a55-a704-16262db39651/ENCFF423KPF.bigWig experiment not submitted to GEO ENCFF769DFG bigWig signal p-value ENCSR312LQX ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF597GFP 951306249 Anshul Kundaje, Stanford 476ea99156d4f895b6c4de3d578f41ef https://www.encodeproject.org/files/ENCFF769DFG/@@download/ENCFF769DFG.bigWig mm10 released s3://encode-public/2017/04/25/1cdb6828-5e8d-45aa-b9a5-83ad9b2a304a/ENCFF769DFG.bigWig experiment not submitted to GEO ENCFF609BWE bigWig fold change over control ENCSR312LQX ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF873VGR 666947289 Anshul Kundaje, Stanford 799b6a2090df70abae2c89e483e3e51d https://www.encodeproject.org/files/ENCFF609BWE/@@download/ENCFF609BWE.bigWig mm10 released s3://encode-public/2017/04/26/6789b94c-18f4-4002-a6e3-f23b93e93c16/ENCFF609BWE.bigWig experiment not submitted to GEO ENCFF551HJC bigWig fold change over control ENCSR312LQX ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF597GFP 1121786900 Anshul Kundaje, Stanford b5092905e58a77c21657fbf225737f2b https://www.encodeproject.org/files/ENCFF551HJC/@@download/ENCFF551HJC.bigWig mm10 released s3://encode-public/2017/04/26/0f6a2261-298a-4470-ae99-2905663cbec2/ENCFF551HJC.bigWig experiment not submitted to GEO ENCFF568THX fastq reads ENCSR623GSD ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF196ILN 1407896301 Bing Ren, UCSD ea41a42e276c5391d2e3ad6ac24fa6db https://www.encodeproject.org/files/ENCFF568THX/@@download/ENCFF568THX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/11f45d51-3b9f-4ac5-a258-e5762f5d8205/ENCFF568THX.fastq.gz experiment not submitted to GEO ENCFF946KOT fastq reads ENCSR623GSD ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF950API 1813875181 Bing Ren, UCSD c78087cb08d7aa81708ff08afc225ccd https://www.encodeproject.org/files/ENCFF946KOT/@@download/ENCFF946KOT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/d70e9b34-81bf-42c5-a391-b07fdc44ed06/ENCFF946KOT.fastq.gz experiment not submitted to GEO ENCFF196ILN fastq reads ENCSR623GSD ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF568THX 1528713221 Bing Ren, UCSD e179403aa24acdd717174e0522f18429 https://www.encodeproject.org/files/ENCFF196ILN/@@download/ENCFF196ILN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/dc64736c-1fa0-4699-a71b-5fb9a42cf126/ENCFF196ILN.fastq.gz experiment not submitted to GEO ENCFF950API fastq reads ENCSR623GSD ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF946KOT 1674752078 Bing Ren, UCSD 163bfcca30dbbbdfe2d26ce0eb3dbc28 https://www.encodeproject.org/files/ENCFF950API/@@download/ENCFF950API.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/a81248ef-48ed-4d3e-9996-efaf06b4b50b/ENCFF950API.fastq.gz experiment not submitted to GEO ENCFF632DLR bam alignments ENCSR623GSD ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF196ILN, ENCFF568THX 3057623652 Anshul Kundaje, Stanford a5541cabebfbe214440df2171c4a2854 https://www.encodeproject.org/files/ENCFF632DLR/@@download/ENCFF632DLR.bam mm10 released s3://encode-public/2017/04/25/40329617-19b8-4079-a86e-1fbf4452b023/ENCFF632DLR.bam experiment not submitted to GEO ENCFF913EAN bam alignments ENCSR623GSD ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF946KOT, ENCFF950API 3583110215 Anshul Kundaje, Stanford f232b7e3e31cbc72fd8e781c7fbf90d6 https://www.encodeproject.org/files/ENCFF913EAN/@@download/ENCFF913EAN.bam mm10 released s3://encode-public/2017/04/25/42e9e0b4-6113-4918-92bd-04c9e628184f/ENCFF913EAN.bam experiment not submitted to GEO ENCFF301YJV bigWig signal p-value ENCSR623GSD ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF632DLR 746090525 Anshul Kundaje, Stanford 0e77bdefcec1e0c9568b2324fb4a9c78 https://www.encodeproject.org/files/ENCFF301YJV/@@download/ENCFF301YJV.bigWig mm10 released s3://encode-public/2017/04/25/2151b03e-f54c-4e0d-8796-c8fe8913fe21/ENCFF301YJV.bigWig experiment not submitted to GEO ENCFF695UMF bigWig signal p-value ENCSR623GSD ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF913EAN 813587570 Anshul Kundaje, Stanford fc6254bb795ffb119602e028dfb94a3a https://www.encodeproject.org/files/ENCFF695UMF/@@download/ENCFF695UMF.bigWig mm10 released s3://encode-public/2017/04/25/340e77c4-5f71-4c2f-a859-db17ec472755/ENCFF695UMF.bigWig experiment not submitted to GEO ENCFF956ZAH bigWig fold change over control ENCSR623GSD ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF632DLR 747869265 Anshul Kundaje, Stanford e1e0ae8d05d77ce2582de20eb28df884 https://www.encodeproject.org/files/ENCFF956ZAH/@@download/ENCFF956ZAH.bigWig mm10 released s3://encode-public/2017/04/26/0e05024f-d798-4f1b-89c6-a92b5a635a64/ENCFF956ZAH.bigWig experiment not submitted to GEO ENCFF759JXW bigWig fold change over control ENCSR623GSD ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF913EAN 890841625 Anshul Kundaje, Stanford 35850eeed8434d7d5e4663f206a63c59 https://www.encodeproject.org/files/ENCFF759JXW/@@download/ENCFF759JXW.bigWig mm10 released s3://encode-public/2017/04/26/d713f694-7888-4de2-91fc-acd7bb970a91/ENCFF759JXW.bigWig experiment not submitted to GEO ENCFF194NYS fastq reads ENCSR136XSY ATAC-seq CL:0000038 erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 48 single-ended 4413527128 Ross Hardison, PennState 9c82d34b878cd0d4f3184b3b9713d5b5 https://www.encodeproject.org/files/ENCFF194NYS/@@download/ENCFF194NYS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/dafba440-7e14-4655-9612-d77291307d20/ENCFF194NYS.fastq.gz inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF765DWT fastq reads ENCSR136XSY ATAC-seq CL:0000038 erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 48 single-ended 3593591935 Ross Hardison, PennState 6446a0053719178bc6f7f87e719eff56 https://www.encodeproject.org/files/ENCFF765DWT/@@download/ENCFF765DWT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/0909df92-db3e-4b36-9b1e-7f67baaabafd/ENCFF765DWT.fastq.gz inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF909QFQ bam alignments ENCSR136XSY ATAC-seq CL:0000038 erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF765DWT 2690398414 Ross Hardison, PennState 5bda9f6bcb770fd17acf69db9433a0ec https://www.encodeproject.org/files/ENCFF909QFQ/@@download/ENCFF909QFQ.bam mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/b622d38d-33f9-4592-a6f8-bd40871fea5a/ENCFF909QFQ.bam inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF780SSI bam alignments ENCSR136XSY ATAC-seq CL:0000038 erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF194NYS 3262579627 Ross Hardison, PennState 1235f77ec5f5f3ca0a3caaa12eef3130 https://www.encodeproject.org/files/ENCFF780SSI/@@download/ENCFF780SSI.bam mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/d0275395-08bc-48a0-bada-361c6fd10785/ENCFF780SSI.bam inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF715CYV bigWig signal of all reads ENCSR136XSY ATAC-seq CL:0000038 erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF909QFQ 3418654088 Ross Hardison, PennState 43b999f539c458d1976342121db19a3e https://www.encodeproject.org/files/ENCFF715CYV/@@download/ENCFF715CYV.bigWig mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/64dcbb4b-bfdd-4c2b-a551-d7030e329b30/ENCFF715CYV.bigWig inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF820ODK bigBed bed3+ peaks ENCSR136XSY ATAC-seq CL:0000038 erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF909QFQ 1552334 Ross Hardison, PennState 18e9bfb1b151bb634c3f8e3b7051ae47 https://www.encodeproject.org/files/ENCFF820ODK/@@download/ENCFF820ODK.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/a9f290a3-de2e-4075-aa21-03e36485a14c/ENCFF820ODK.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF918YHD bigBed narrowPeak open chromatin regions ENCSR136XSY ATAC-seq CL:0000038 erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF909QFQ 9658766 Ross Hardison, PennState bdd68aa073b0647d64e1aabb77d66858 https://www.encodeproject.org/files/ENCFF918YHD/@@download/ENCFF918YHD.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/ff0b12c0-fdaa-48ac-b478-1767bffa5a27/ENCFF918YHD.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF561BUB bigWig signal of all reads ENCSR136XSY ATAC-seq CL:0000038 erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF780SSI 3473475763 Ross Hardison, PennState 85667dc5a2fa111230be73ed341edcfc https://www.encodeproject.org/files/ENCFF561BUB/@@download/ENCFF561BUB.bigWig mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/368c73b8-80a5-459e-8b67-fd95dc43a090/ENCFF561BUB.bigWig inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF659IXE bigBed narrowPeak open chromatin regions ENCSR136XSY ATAC-seq CL:0000038 erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF780SSI 13049181 Ross Hardison, PennState 26e5e22af7319b0968a34427dca9ebe6 https://www.encodeproject.org/files/ENCFF659IXE/@@download/ENCFF659IXE.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/e9cbaa8f-38a2-4e4e-915d-2a66f09ac5de/ENCFF659IXE.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF250KOD bigBed bed3+ peaks ENCSR136XSY ATAC-seq CL:0000038 erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF780SSI 1611351 Ross Hardison, PennState b5c975148ecbf54510c9d4cd77d7e4d9 https://www.encodeproject.org/files/ENCFF250KOD/@@download/ENCFF250KOD.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/6f9fb621-72f1-4b07-b050-5d1285ebd1dc/ENCFF250KOD.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF796ZSB bigBed bed3+ filtered peaks ENCSR136XSY ATAC-seq CL:0000038 erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF790DJT, ENCFF820ODK 1507228 Ross Hardison, PennState 3ded649626299c02fc4c82c23369f360 https://www.encodeproject.org/files/ENCFF796ZSB/@@download/ENCFF796ZSB.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/e19ae9a3-1f0e-402a-aefd-b772cdbfeb95/ENCFF796ZSB.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF319IYJ bigBed narrowPeak filtered regions ENCSR136XSY ATAC-seq CL:0000038 erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF790DJT, ENCFF918YHD 3003176 Ross Hardison, PennState 9639794571061decb51e99e2b6b405ff https://www.encodeproject.org/files/ENCFF319IYJ/@@download/ENCFF319IYJ.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/2c7e10af-2409-4268-8108-b8c251eb749c/ENCFF319IYJ.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF599ZDJ bigBed bed3+ filtered peaks ENCSR136XSY ATAC-seq CL:0000038 erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF250KOD, ENCFF790DJT 1570275 Ross Hardison, PennState 83d6711e9a2853c33c21a85a92e53176 https://www.encodeproject.org/files/ENCFF599ZDJ/@@download/ENCFF599ZDJ.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/f7fb64c6-01ca-4818-8df8-7641440eac90/ENCFF599ZDJ.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF156LOW bigBed narrowPeak filtered regions ENCSR136XSY ATAC-seq CL:0000038 erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF659IXE, ENCFF790DJT 2977070 Ross Hardison, PennState 3cc1b60b4db6ea50776013eb5e266702 https://www.encodeproject.org/files/ENCFF156LOW/@@download/ENCFF156LOW.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/0c191e34-c3fc-4b54-8429-7cb9e9e83d6f/ENCFF156LOW.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF834KZY fastq reads ENCSR136XSY ATAC-seq CL:0000038 erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 48 single-ended 1511029565 Ross Hardison, PennState 9438a58d3048332c53869fe80feb08ea https://www.encodeproject.org/files/ENCFF834KZY/@@download/ENCFF834KZY.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/27/f46f5b13-cb63-4a5a-9a1b-f826fbc6f800/ENCFF834KZY.fastq.gz inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF431KXE bam alignments ENCSR136XSY ATAC-seq CL:0000038 erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF765DWT, ENCFF834KZY 1316799590 Anshul Kundaje, Stanford 45a1f6edb2108b825d71a802d280d525 https://www.encodeproject.org/files/ENCFF431KXE/@@download/ENCFF431KXE.bam mm10 released s3://encode-public/2017/05/11/d6aea565-81d3-478f-b00d-2ae9495d482e/ENCFF431KXE.bam inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF210MKE bam alignments ENCSR136XSY ATAC-seq CL:0000038 erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF194NYS 1290187297 Anshul Kundaje, Stanford 091014101d1d39607c3e196844f63aed https://www.encodeproject.org/files/ENCFF210MKE/@@download/ENCFF210MKE.bam mm10 released s3://encode-public/2017/05/11/dd796fce-9299-40b7-94b1-618696fbc0cb/ENCFF210MKE.bam inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF275ALB bigWig signal p-value ENCSR136XSY ATAC-seq CL:0000038 erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF431KXE 225108014 Anshul Kundaje, Stanford c64fba20bb13dc35a1ebc2d42b293779 https://www.encodeproject.org/files/ENCFF275ALB/@@download/ENCFF275ALB.bigWig mm10 released s3://encode-public/2017/05/11/62490f9e-cffd-4001-b0fe-faaaf45ce269/ENCFF275ALB.bigWig inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF588IXK bigWig fold change over control ENCSR136XSY ATAC-seq CL:0000038 erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF210MKE 319348746 Anshul Kundaje, Stanford 72d0e3557bfefe856eb0a7d8624f56e8 https://www.encodeproject.org/files/ENCFF588IXK/@@download/ENCFF588IXK.bigWig mm10 released s3://encode-public/2017/05/11/68a20d7c-be99-4970-8dfd-44a8b2d2407e/ENCFF588IXK.bigWig inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF695LQG bigWig signal p-value ENCSR136XSY ATAC-seq CL:0000038 erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF210MKE 270193948 Anshul Kundaje, Stanford 37d8d188fc827b49995401f448bd0beb https://www.encodeproject.org/files/ENCFF695LQG/@@download/ENCFF695LQG.bigWig mm10 released s3://encode-public/2017/05/11/4585b740-7b31-4d55-8b20-e144cf7db076/ENCFF695LQG.bigWig inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF570DUW bigWig fold change over control ENCSR136XSY ATAC-seq CL:0000038 erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF431KXE 328157954 Anshul Kundaje, Stanford 7af1c15739f124b9d5b0b59ed0511856 https://www.encodeproject.org/files/ENCFF570DUW/@@download/ENCFF570DUW.bigWig mm10 released s3://encode-public/2017/05/11/e1966857-1ef0-446f-99ee-92a35cbc0e51/ENCFF570DUW.bigWig inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF005XHN bed narrowPeak replicated peaks ENCSR136XSY ATAC-seq CL:0000038 erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1, 2 ENCFF833KMG, ENCFF836ZLZ 5336548 Anshul Kundaje, Stanford d33d823597f9c1a70f1349f85fe4d994 https://www.encodeproject.org/files/ENCFF005XHN/@@download/ENCFF005XHN.bed.gz mm10 archived s3://encode-public/2017/05/11/f7d003d7-03cf-45bf-8fa4-c488bf934e84/ENCFF005XHN.bed.gz inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF757DPW bigBed narrowPeak replicated peaks ENCSR136XSY ATAC-seq CL:0000038 erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1, 2 ENCFF005XHN 10645018 Anshul Kundaje, Stanford e6f4f37683aaa8ddb87f6169c930aa2f https://www.encodeproject.org/files/ENCFF757DPW/@@download/ENCFF757DPW.bigBed mm10 archived s3://encode-public/2017/05/11/9ededc4a-6f6c-4f8f-beb3-8ff2c823bad7/ENCFF757DPW.bigBed inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF348JLD fastq reads ENCSR630REB ATAC-seq UBERON:0007610 tibial artery tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF142TIS 4965739859 Michael Snyder, Stanford 1b4601134ac6499e2e3f86a3fd246d22 https://www.encodeproject.org/files/ENCFF348JLD/@@download/ENCFF348JLD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/24d2d0fd-b814-4537-8427-fa47b75d5f69/ENCFF348JLD.fastq.gz experiment not submitted to GEO ENCFF142TIS fastq reads ENCSR630REB ATAC-seq UBERON:0007610 tibial artery tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF348JLD 5297057229 Michael Snyder, Stanford c89fbf03647299030385053e1665d16a https://www.encodeproject.org/files/ENCFF142TIS/@@download/ENCFF142TIS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/87c239ab-ef0e-4d49-8a24-fec45ec5c565/ENCFF142TIS.fastq.gz experiment not submitted to GEO ENCFF168OTV bam alignments ENCSR630REB ATAC-seq UBERON:0007610 tibial artery tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF142TIS, ENCFF348JLD 6543431811 Anshul Kundaje, Stanford e5aae24f4737a1ae5a2531909ad01886 https://www.encodeproject.org/files/ENCFF168OTV/@@download/ENCFF168OTV.bam GRCh38 released s3://encode-public/2016/12/22/b53a1699-5657-4824-9a3d-b19af80784f7/ENCFF168OTV.bam experiment not submitted to GEO ENCFF140JYW bigWig signal p-value ENCSR630REB ATAC-seq UBERON:0007610 tibial artery tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF168OTV 1044128179 Anshul Kundaje, Stanford b3495341b931b3cb77804421db0b32c8 https://www.encodeproject.org/files/ENCFF140JYW/@@download/ENCFF140JYW.bigWig GRCh38 released s3://encode-public/2016/12/22/98814e46-db97-4535-8ff7-90a9b6c47be4/ENCFF140JYW.bigWig experiment not submitted to GEO ENCFF742FNY bigWig fold change over control ENCSR630REB ATAC-seq UBERON:0007610 tibial artery tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF168OTV 1321554269 Anshul Kundaje, Stanford 739e305b72c3ba4000b768934a26cd01 https://www.encodeproject.org/files/ENCFF742FNY/@@download/ENCFF742FNY.bigWig GRCh38 released s3://encode-public/2016/12/22/49a315b4-c022-49ed-90f6-55d8180d2696/ENCFF742FNY.bigWig experiment not submitted to GEO ENCFF197GTC fastq reads ENCSR310MLB ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF209GGJ 1265056904 Bing Ren, UCSD a949366ed72752ca791f764da0bba450 https://www.encodeproject.org/files/ENCFF197GTC/@@download/ENCFF197GTC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/3b1b3e53-41ee-421b-8fb7-487dfdd7951a/ENCFF197GTC.fastq.gz experiment not submitted to GEO ENCFF209GGJ fastq reads ENCSR310MLB ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF197GTC 1410171177 Bing Ren, UCSD b187e12b102b3d9614c492c05438a15c https://www.encodeproject.org/files/ENCFF209GGJ/@@download/ENCFF209GGJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/e773174f-8118-41c6-8eeb-5f51892c55b1/ENCFF209GGJ.fastq.gz experiment not submitted to GEO ENCFF296GZG fastq reads ENCSR310MLB ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF664RZO 1505165357 Bing Ren, UCSD 9791910951e7eeff45f69bbfcfbc74bf https://www.encodeproject.org/files/ENCFF296GZG/@@download/ENCFF296GZG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/af1c3613-50e6-46c3-9981-67d01bf13602/ENCFF296GZG.fastq.gz experiment not submitted to GEO ENCFF664RZO fastq reads ENCSR310MLB ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF296GZG 1626875202 Bing Ren, UCSD d3ced564f3a1587b7a5e14273f947511 https://www.encodeproject.org/files/ENCFF664RZO/@@download/ENCFF664RZO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/5535e9f9-f00f-4926-9311-7c049717e2b2/ENCFF664RZO.fastq.gz experiment not submitted to GEO ENCFF535DAV bam alignments ENCSR310MLB ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF197GTC, ENCFF209GGJ 2528768409 Anshul Kundaje, Stanford 4dc9fadef4ecaf4e4713d4893b9cade1 https://www.encodeproject.org/files/ENCFF535DAV/@@download/ENCFF535DAV.bam mm10 released s3://encode-public/2017/04/25/878cedcb-1459-493f-b847-fa3f58b22f88/ENCFF535DAV.bam experiment not submitted to GEO ENCFF337ETV bam alignments ENCSR310MLB ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF296GZG, ENCFF664RZO 3157842516 Anshul Kundaje, Stanford 31efaa1988e82b7b2850255c6ed9222b https://www.encodeproject.org/files/ENCFF337ETV/@@download/ENCFF337ETV.bam mm10 released s3://encode-public/2017/04/25/74a4d5c6-8030-4c7b-9746-fc5262846da4/ENCFF337ETV.bam experiment not submitted to GEO ENCFF995ODT bigWig signal p-value ENCSR310MLB ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF337ETV 556014894 Anshul Kundaje, Stanford 983b63eef4f52158493eb1586d3adfaf https://www.encodeproject.org/files/ENCFF995ODT/@@download/ENCFF995ODT.bigWig mm10 released s3://encode-public/2017/04/25/33c01b64-b3cf-41e0-a87c-233ba9d979c3/ENCFF995ODT.bigWig experiment not submitted to GEO ENCFF588MMH bigWig signal p-value ENCSR310MLB ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF535DAV 611357747 Anshul Kundaje, Stanford f49acc7fe2ee298bcfbe5bef4eeeb311 https://www.encodeproject.org/files/ENCFF588MMH/@@download/ENCFF588MMH.bigWig mm10 released s3://encode-public/2017/04/25/f5455c56-cf1a-4dba-a749-0160c8957e4e/ENCFF588MMH.bigWig experiment not submitted to GEO ENCFF223KGF bigWig fold change over control ENCSR310MLB ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF535DAV 596151612 Anshul Kundaje, Stanford b66ca7599ed3c8a6a71011f2536b0ddc https://www.encodeproject.org/files/ENCFF223KGF/@@download/ENCFF223KGF.bigWig mm10 released s3://encode-public/2017/04/26/ffadf785-3be1-4a5e-9329-6960154d5160/ENCFF223KGF.bigWig experiment not submitted to GEO ENCFF092DWB bigWig fold change over control ENCSR310MLB ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF337ETV 662187034 Anshul Kundaje, Stanford dbb1f729b9a38e187ee4615220c38a07 https://www.encodeproject.org/files/ENCFF092DWB/@@download/ENCFF092DWB.bigWig mm10 released s3://encode-public/2017/04/26/ff030373-9f0f-4749-a6a4-ba735d6bbc21/ENCFF092DWB.bigWig experiment not submitted to GEO ENCFF974WES fastq reads ENCSR668VCT ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF031NSW 4724882816 Michael Snyder, Stanford 2cced50132dcd24db6bf6cdee093fbad https://www.encodeproject.org/files/ENCFF974WES/@@download/ENCFF974WES.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/c7f90bb7-0190-476a-a722-8a5e9d72ddb9/ENCFF974WES.fastq.gz experiment not submitted to GEO ENCFF031NSW fastq reads ENCSR668VCT ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF974WES 4919315907 Michael Snyder, Stanford 2d14e23ed6a636b2d8755ff757e30429 https://www.encodeproject.org/files/ENCFF031NSW/@@download/ENCFF031NSW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/50a7b008-15e1-4018-85cc-97b0b97fbdbc/ENCFF031NSW.fastq.gz experiment not submitted to GEO ENCFF377DAO bam alignments ENCSR668VCT ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF031NSW, ENCFF974WES 5697898303 Anshul Kundaje, Stanford 91158aec5eaba7618b8100db6a7ff127 https://www.encodeproject.org/files/ENCFF377DAO/@@download/ENCFF377DAO.bam GRCh38 released s3://encode-public/2016/12/22/5dd4ba55-6f9e-49fd-ab97-68dd60517ad4/ENCFF377DAO.bam experiment not submitted to GEO ENCFF523ZFE bigWig fold change over control ENCSR668VCT ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF377DAO 1298976542 Anshul Kundaje, Stanford 1a57867944d4318b5ae47b3b8cc41d96 https://www.encodeproject.org/files/ENCFF523ZFE/@@download/ENCFF523ZFE.bigWig GRCh38 released s3://encode-public/2016/12/22/a3b1eafd-64e6-4d8d-a69a-cefe688e1ad1/ENCFF523ZFE.bigWig experiment not submitted to GEO ENCFF361WMW bigWig signal p-value ENCSR668VCT ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF377DAO 1088354105 Anshul Kundaje, Stanford 31ab4e749111f550735df5b08ef28fe9 https://www.encodeproject.org/files/ENCFF361WMW/@@download/ENCFF361WMW.bigWig GRCh38 released s3://encode-public/2016/12/22/fb710cd2-e1a7-4830-bbe5-37988ac3e160/ENCFF361WMW.bigWig experiment not submitted to GEO ENCFF549AFY fastq reads ENCSR117PYB ATAC-seq UBERON:0002084 heart left ventricle tissue Homo sapiens DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 2 ENCFF695YHX 2650545956 Michael Snyder, Stanford 0dd6cc4ee4ab7c000259aeec5fb3bc1c https://www.encodeproject.org/files/ENCFF549AFY/@@download/ENCFF549AFY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/28/aad7073f-c3a6-40e9-a2ec-3782171ab8d7/ENCFF549AFY.fastq.gz experiment not submitted to GEO ENCFF695YHX fastq reads ENCSR117PYB ATAC-seq UBERON:0002084 heart left ventricle tissue Homo sapiens DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 1 ENCFF549AFY 2364455049 Michael Snyder, Stanford 6be014df65aedac462f4baf24701e394 https://www.encodeproject.org/files/ENCFF695YHX/@@download/ENCFF695YHX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/28/ab140d43-d2f7-4f04-a5a6-6cb3115c4c05/ENCFF695YHX.fastq.gz experiment not submitted to GEO ENCFF148ZMS bigWig fold change over control ENCSR117PYB ATAC-seq UBERON:0002084 heart left ventricle tissue Homo sapiens DNA False 2017-01-30 ENCODE 1 ENCFF906UQF 654990768 Anshul Kundaje, Stanford 1af06447fa03bbd87adecdb2ef9573c7 https://www.encodeproject.org/files/ENCFF148ZMS/@@download/ENCFF148ZMS.bigWig GRCh38 released s3://encode-public/2017/02/09/f06d71fa-1c74-4da6-b96c-9b057c76ab75/ENCFF148ZMS.bigWig experiment not submitted to GEO ENCFF906UQF bam alignments ENCSR117PYB ATAC-seq UBERON:0002084 heart left ventricle tissue Homo sapiens DNA False 2017-01-30 ENCODE 1 ENCFF549AFY, ENCFF695YHX 2790814049 Anshul Kundaje, Stanford 8eb6d2a8aa8ea1cc41bb8253b5c64936 https://www.encodeproject.org/files/ENCFF906UQF/@@download/ENCFF906UQF.bam GRCh38 released s3://encode-public/2017/02/09/65a8f6c1-28a6-402a-a62d-00cc813cfeb8/ENCFF906UQF.bam experiment not submitted to GEO ENCFF399LRC bigWig signal p-value ENCSR117PYB ATAC-seq UBERON:0002084 heart left ventricle tissue Homo sapiens DNA False 2017-01-30 ENCODE 1 ENCFF906UQF 615223179 Anshul Kundaje, Stanford 8e7b5aff39520f01f7348ac277d59cb8 https://www.encodeproject.org/files/ENCFF399LRC/@@download/ENCFF399LRC.bigWig GRCh38 released s3://encode-public/2017/02/09/a35444d2-a05f-4a5d-b8fb-8082a038ec34/ENCFF399LRC.bigWig experiment not submitted to GEO ENCFF566LXM fastq reads ENCSR344ZTM ATAC-seq UBERON:0001515 thoracic aorta tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 1 ENCFF141NYG 1254016092 Michael Snyder, Stanford bc1860343b52ceaa4696d7e01bfa0195 https://www.encodeproject.org/files/ENCFF566LXM/@@download/ENCFF566LXM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/22/01a852f0-ebe2-4fd4-a10e-51ed6c8c16d0/ENCFF566LXM.fastq.gz experiment not submitted to GEO ENCFF038BYR fastq reads ENCSR344ZTM ATAC-seq UBERON:0001515 thoracic aorta tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 2 100 paired-ended 2 ENCFF721JZG 1038509959 Michael Snyder, Stanford 0a29a4a3dd9d3426ef137507ec79039b https://www.encodeproject.org/files/ENCFF038BYR/@@download/ENCFF038BYR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/22/eea93514-8e0d-4bc1-afbf-1ad28afaac79/ENCFF038BYR.fastq.gz experiment not submitted to GEO ENCFF141NYG fastq reads ENCSR344ZTM ATAC-seq UBERON:0001515 thoracic aorta tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 2 ENCFF566LXM 1251436012 Michael Snyder, Stanford 4f6ead7460ed803aac29759b1adef913 https://www.encodeproject.org/files/ENCFF141NYG/@@download/ENCFF141NYG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/22/0bde71de-503f-4938-abff-2d930d6247d8/ENCFF141NYG.fastq.gz experiment not submitted to GEO ENCFF721JZG fastq reads ENCSR344ZTM ATAC-seq UBERON:0001515 thoracic aorta tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 2 100 paired-ended 1 ENCFF038BYR 1033839617 Michael Snyder, Stanford 7b92a5d02fba5d8be875ef1590b4237e https://www.encodeproject.org/files/ENCFF721JZG/@@download/ENCFF721JZG.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/22/fe5ddc61-319f-4f24-acfe-657bdd8dec7a/ENCFF721JZG.fastq.gz experiment not submitted to GEO ENCFF984OPE bam alignments ENCSR344ZTM ATAC-seq UBERON:0001515 thoracic aorta tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF038BYR, ENCFF141NYG, ENCFF566LXM, ENCFF721JZG 3267460870 Anshul Kundaje, Stanford 064654c02f01536ef980f1752007d9a6 https://www.encodeproject.org/files/ENCFF984OPE/@@download/ENCFF984OPE.bam GRCh38 released s3://encode-public/2017/04/01/e3bec162-4b03-4f27-9352-ce0e61acf62f/ENCFF984OPE.bam experiment not submitted to GEO ENCFF507OEP bigWig signal p-value ENCSR344ZTM ATAC-seq UBERON:0001515 thoracic aorta tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF984OPE 510013523 Anshul Kundaje, Stanford fe20cc67f0ffc5451f040d08017d9848 https://www.encodeproject.org/files/ENCFF507OEP/@@download/ENCFF507OEP.bigWig GRCh38 released s3://encode-public/2017/04/01/deb4612e-2546-4509-870a-885b24ca8b9e/ENCFF507OEP.bigWig experiment not submitted to GEO ENCFF611PRW bigWig fold change over control ENCSR344ZTM ATAC-seq UBERON:0001515 thoracic aorta tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF984OPE 553877481 Anshul Kundaje, Stanford b943f205a80f91b498ee192360ede145 https://www.encodeproject.org/files/ENCFF611PRW/@@download/ENCFF611PRW.bigWig GRCh38 released s3://encode-public/2017/04/01/ad0038b3-c8a7-4fd7-9be4-36f72a9628eb/ENCFF611PRW.bigWig experiment not submitted to GEO ENCFF033TLP fastq reads ENCSR474XFV ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF095LGS 1707195642 Michael Snyder, Stanford 02a0fe4a57d8fd0ef8e63cd082e0243e https://www.encodeproject.org/files/ENCFF033TLP/@@download/ENCFF033TLP.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/96b81a9e-898d-4802-a660-53d6fa65b1f2/ENCFF033TLP.fastq.gz experiment not submitted to GEO ENCFF290XJM fastq reads ENCSR474XFV ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF966SFV 3771621707 Michael Snyder, Stanford 2fe9a5c2f6a9e9712b4b0f36f8f121f6 https://www.encodeproject.org/files/ENCFF290XJM/@@download/ENCFF290XJM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/be0062c6-e7cb-48a0-90f4-2b494ea76c20/ENCFF290XJM.fastq.gz experiment not submitted to GEO ENCFF966SFV fastq reads ENCSR474XFV ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF290XJM 3554742874 Michael Snyder, Stanford ef6968dfe1e3610d0b275cbe73bcd4f4 https://www.encodeproject.org/files/ENCFF966SFV/@@download/ENCFF966SFV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/470f38ea-b845-4da9-accd-a20935b8afc8/ENCFF966SFV.fastq.gz experiment not submitted to GEO ENCFF095LGS fastq reads ENCSR474XFV ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF033TLP 1765607657 Michael Snyder, Stanford d4dd4d7c6e974a6992203db779e27bec https://www.encodeproject.org/files/ENCFF095LGS/@@download/ENCFF095LGS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/f9af2fd2-bbff-4626-93f8-0f91f45e6de9/ENCFF095LGS.fastq.gz experiment not submitted to GEO ENCFF710ELD bam alignments ENCSR474XFV ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF033TLP, ENCFF095LGS, ENCFF290XJM, ENCFF966SFV 7599791274 Anshul Kundaje, Stanford 42b7a91d4c0d4df2a0cdf8bff55a7aa9 https://www.encodeproject.org/files/ENCFF710ELD/@@download/ENCFF710ELD.bam GRCh38 released s3://encode-public/2016/12/22/2bdca221-0442-477a-bd27-de14f260fdab/ENCFF710ELD.bam experiment not submitted to GEO ENCFF349HDW bigWig signal p-value ENCSR474XFV ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF710ELD 911360925 Anshul Kundaje, Stanford 6130c0b33c289015b95ecbb8488da215 https://www.encodeproject.org/files/ENCFF349HDW/@@download/ENCFF349HDW.bigWig GRCh38 released s3://encode-public/2016/12/22/c6002c31-d827-48a8-9355-e91142b2cb03/ENCFF349HDW.bigWig experiment not submitted to GEO ENCFF859JIM bigWig fold change over control ENCSR474XFV ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF710ELD 1085380206 Anshul Kundaje, Stanford 17343c86afba94107cd1c4caf0818675 https://www.encodeproject.org/files/ENCFF859JIM/@@download/ENCFF859JIM.bigWig GRCh38 released s3://encode-public/2016/12/22/8affe2fc-f623-4f14-878c-44c0c1b819e8/ENCFF859JIM.bigWig experiment not submitted to GEO ENCFF035UUL fastq reads ENCSR373TDL ATAC-seq UBERON:0001114 right lobe of liver tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF259ZLS 3466088953 Michael Snyder, Stanford 01bf3ab53812f1fa592e1987d462b5ca https://www.encodeproject.org/files/ENCFF035UUL/@@download/ENCFF035UUL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/31/5bdbddb5-a2ca-4299-8244-6e8a8640aa4b/ENCFF035UUL.fastq.gz experiment not submitted to GEO ENCFF259ZLS fastq reads ENCSR373TDL ATAC-seq UBERON:0001114 right lobe of liver tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF035UUL 3769352283 Michael Snyder, Stanford ce0615d3d6c69de9860ba7a18a4e9152 https://www.encodeproject.org/files/ENCFF259ZLS/@@download/ENCFF259ZLS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/31/19365bf5-48e5-4753-99bb-cdd8eb19e365/ENCFF259ZLS.fastq.gz experiment not submitted to GEO ENCFF628MCV bam alignments ENCSR373TDL ATAC-seq UBERON:0001114 right lobe of liver tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF035UUL, ENCFF259ZLS 4331521409 Anshul Kundaje, Stanford 2e02e1c2413d0e8c0b607cb3cbd914c8 https://www.encodeproject.org/files/ENCFF628MCV/@@download/ENCFF628MCV.bam GRCh38 released s3://encode-public/2016/12/22/901dfb90-721d-453b-ae39-0bb798646632/ENCFF628MCV.bam experiment not submitted to GEO ENCFF490ZBQ bigWig signal p-value ENCSR373TDL ATAC-seq UBERON:0001114 right lobe of liver tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF628MCV 894731243 Anshul Kundaje, Stanford a13915bb16175ab3cac191c92ac2af25 https://www.encodeproject.org/files/ENCFF490ZBQ/@@download/ENCFF490ZBQ.bigWig GRCh38 released s3://encode-public/2016/12/22/fbb8f471-1d42-4a75-b0be-dc4b7c4d515f/ENCFF490ZBQ.bigWig experiment not submitted to GEO ENCFF025ING bigWig fold change over control ENCSR373TDL ATAC-seq UBERON:0001114 right lobe of liver tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF628MCV 1077790909 Anshul Kundaje, Stanford be96adae64694996e0c4f18e8f1b203b https://www.encodeproject.org/files/ENCFF025ING/@@download/ENCFF025ING.bigWig GRCh38 released s3://encode-public/2016/12/22/523b74ca-e796-4276-b91f-6571ee880676/ENCFF025ING.bigWig experiment not submitted to GEO ENCFF524LVZ fastq reads ENCSR152PSA ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF696YKQ 2074373294 Michael Snyder, Stanford 21ab410471120b5a4add63090a9eb556 https://www.encodeproject.org/files/ENCFF524LVZ/@@download/ENCFF524LVZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/781708aa-d5ee-4031-99e0-35bb9188b8f7/ENCFF524LVZ.fastq.gz experiment not submitted to GEO ENCFF696YKQ fastq reads ENCSR152PSA ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF524LVZ 2097555206 Michael Snyder, Stanford 69e168b8cbb0651a0f9b37f185cacc2e https://www.encodeproject.org/files/ENCFF696YKQ/@@download/ENCFF696YKQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/87eb95ea-2011-4402-a14f-51980e1b5b94/ENCFF696YKQ.fastq.gz experiment not submitted to GEO ENCFF112OLQ fastq reads ENCSR152PSA ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF463ZBN 1716783572 Michael Snyder, Stanford a866205c897ddb162dc79473c8932349 https://www.encodeproject.org/files/ENCFF112OLQ/@@download/ENCFF112OLQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/7bc50769-3b32-4236-8220-8e877d56992e/ENCFF112OLQ.fastq.gz experiment not submitted to GEO ENCFF463ZBN fastq reads ENCSR152PSA ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF112OLQ 1798305166 Michael Snyder, Stanford d78189e83955d50082c66b0acd972d8a https://www.encodeproject.org/files/ENCFF463ZBN/@@download/ENCFF463ZBN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/ca6ec84d-d940-4c4c-b054-3dd8db8c9d67/ENCFF463ZBN.fastq.gz experiment not submitted to GEO ENCFF830XMY bam alignments ENCSR152PSA ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF112OLQ, ENCFF463ZBN, ENCFF524LVZ, ENCFF696YKQ 5367137273 Anshul Kundaje, Stanford dac99956f55701068448cf72c376af27 https://www.encodeproject.org/files/ENCFF830XMY/@@download/ENCFF830XMY.bam GRCh38 released s3://encode-public/2016/12/22/8a7c9055-2284-47c5-acca-ba06729eac6f/ENCFF830XMY.bam experiment not submitted to GEO ENCFF345CRC bigWig signal p-value ENCSR152PSA ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF830XMY 546540470 Anshul Kundaje, Stanford 3d0d21f7612061a5e8de45870eae07e7 https://www.encodeproject.org/files/ENCFF345CRC/@@download/ENCFF345CRC.bigWig GRCh38 released s3://encode-public/2016/12/22/b0b7f155-1d3c-42b9-b2ce-592aaba4c29d/ENCFF345CRC.bigWig experiment not submitted to GEO ENCFF015FKA bigWig fold change over control ENCSR152PSA ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF830XMY 823088782 Anshul Kundaje, Stanford cbaf84a268bffdc278d6fd8d03a951f1 https://www.encodeproject.org/files/ENCFF015FKA/@@download/ENCFF015FKA.bigWig GRCh38 released s3://encode-public/2016/12/22/79b8f73d-2f89-4c3d-9bc0-29544eb6da12/ENCFF015FKA.bigWig experiment not submitted to GEO ENCFF215GFE fastq reads ENCSR540BML ATAC-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF987RZW 5782460539 Michael Snyder, Stanford 26d620e45b93ee945809d4a1be217cd5 https://www.encodeproject.org/files/ENCFF215GFE/@@download/ENCFF215GFE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/b025aad8-725f-4257-9a8f-2751ac0152bb/ENCFF215GFE.fastq.gz experiment not submitted to GEO ENCFF987RZW fastq reads ENCSR540BML ATAC-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF215GFE 5465350440 Michael Snyder, Stanford 6dc1fc22c31744f40d2a9c5bfec06395 https://www.encodeproject.org/files/ENCFF987RZW/@@download/ENCFF987RZW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/06aa9cd0-d251-47b7-a6d3-b055539fb47c/ENCFF987RZW.fastq.gz experiment not submitted to GEO ENCFF159RKV bam alignments ENCSR540BML ATAC-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF215GFE, ENCFF987RZW 6935837559 Anshul Kundaje, Stanford e6ab7cca33cbd59eef2d9b9a090f5dcf https://www.encodeproject.org/files/ENCFF159RKV/@@download/ENCFF159RKV.bam GRCh38 released s3://encode-public/2016/12/22/4d1c5a06-1573-490a-a6e7-fe1521777620/ENCFF159RKV.bam experiment not submitted to GEO ENCFF502JSR bigWig signal p-value ENCSR540BML ATAC-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF159RKV 1037272929 Anshul Kundaje, Stanford 23aeeebe1e30c812c16cce8199badaef https://www.encodeproject.org/files/ENCFF502JSR/@@download/ENCFF502JSR.bigWig GRCh38 released s3://encode-public/2016/12/22/33fbde1a-e1a5-4e48-9c9e-247372e52043/ENCFF502JSR.bigWig experiment not submitted to GEO ENCFF528OME bigWig fold change over control ENCSR540BML ATAC-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF159RKV 1550335985 Anshul Kundaje, Stanford 7adec5865208c3757aeb856d0d4c8966 https://www.encodeproject.org/files/ENCFF528OME/@@download/ENCFF528OME.bigWig GRCh38 released s3://encode-public/2016/12/22/f46c9ece-2120-4476-ac48-ee04ef438d9d/ENCFF528OME.bigWig experiment not submitted to GEO ENCFF705BQG fastq reads ENCSR102NGD ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF269YOD 2006622849 Bing Ren, UCSD 7abbd274475e77c17b4f86a2b45c9b08 https://www.encodeproject.org/files/ENCFF705BQG/@@download/ENCFF705BQG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/9fbb8a9c-7189-4180-bf96-8a3922b4d29e/ENCFF705BQG.fastq.gz experiment not submitted to GEO ENCFF269YOD fastq reads ENCSR102NGD ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF705BQG 2219753556 Bing Ren, UCSD d343a99bd96f190c3226c15d901537a0 https://www.encodeproject.org/files/ENCFF269YOD/@@download/ENCFF269YOD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/b8044400-d0d7-4b8b-9737-ece455696bcf/ENCFF269YOD.fastq.gz experiment not submitted to GEO ENCFF370OFA fastq reads ENCSR102NGD ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF150BVC 1642313921 Bing Ren, UCSD ea0a0fee1dc36bdd5e0129ea0cc0ca5a https://www.encodeproject.org/files/ENCFF370OFA/@@download/ENCFF370OFA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/42022ac1-36d5-4d63-ae87-8eb2d33addf8/ENCFF370OFA.fastq.gz experiment not submitted to GEO ENCFF150BVC fastq reads ENCSR102NGD ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF370OFA 1807454235 Bing Ren, UCSD 7d20503cf9fd109d11ee28087366b0df https://www.encodeproject.org/files/ENCFF150BVC/@@download/ENCFF150BVC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/c3081386-982f-44d7-a9ab-56317014235c/ENCFF150BVC.fastq.gz experiment not submitted to GEO ENCFF203DOC bam alignments ENCSR102NGD ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF269YOD, ENCFF705BQG 3799657971 Anshul Kundaje, Stanford 52a4b6831e9b7f296183621f2b1b79a0 https://www.encodeproject.org/files/ENCFF203DOC/@@download/ENCFF203DOC.bam mm10 released s3://encode-public/2017/04/25/2f75a426-e987-46a6-8899-d6c239d9e48c/ENCFF203DOC.bam experiment not submitted to GEO ENCFF823PTD bam alignments ENCSR102NGD ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF150BVC, ENCFF370OFA 3095780312 Anshul Kundaje, Stanford d115acd1a36472689cf2792b47b57905 https://www.encodeproject.org/files/ENCFF823PTD/@@download/ENCFF823PTD.bam mm10 released s3://encode-public/2017/04/25/80fd0ad7-642f-4f5b-8e63-dfac3daca6e6/ENCFF823PTD.bam experiment not submitted to GEO ENCFF583OFO bigWig signal p-value ENCSR102NGD ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF203DOC 548535474 Anshul Kundaje, Stanford 3d5f8f0855a7f95110bc5ee2b2c8af30 https://www.encodeproject.org/files/ENCFF583OFO/@@download/ENCFF583OFO.bigWig mm10 released s3://encode-public/2017/04/25/e600b9f0-9bc8-44d5-9b92-c1deaed165d0/ENCFF583OFO.bigWig experiment not submitted to GEO ENCFF366EFR bigWig signal p-value ENCSR102NGD ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF823PTD 648242809 Anshul Kundaje, Stanford 2854b39c4a9ea9d4e8d08d45637b25dd https://www.encodeproject.org/files/ENCFF366EFR/@@download/ENCFF366EFR.bigWig mm10 released s3://encode-public/2017/04/25/089d818c-e722-4cc2-8474-84533b828233/ENCFF366EFR.bigWig experiment not submitted to GEO ENCFF823RLW bigWig fold change over control ENCSR102NGD ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF203DOC 827903609 Anshul Kundaje, Stanford 9ef24f6fa31cef7fad4236f9c486da46 https://www.encodeproject.org/files/ENCFF823RLW/@@download/ENCFF823RLW.bigWig mm10 released s3://encode-public/2017/04/26/baab9650-030a-4183-8458-ed1160b567f3/ENCFF823RLW.bigWig experiment not submitted to GEO ENCFF636JWE bigWig fold change over control ENCSR102NGD ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF823PTD 667760889 Anshul Kundaje, Stanford dd559afc237c1d9f1179a5d92e6f276c https://www.encodeproject.org/files/ENCFF636JWE/@@download/ENCFF636JWE.bigWig mm10 released s3://encode-public/2017/04/26/1c3e6214-3b0e-4e6b-adca-917516ce0b7b/ENCFF636JWE.bigWig experiment not submitted to GEO ENCFF332SCG fastq reads ENCSR086OGH ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF591BAY 4829455575 Michael Snyder, Stanford 46c728282f436846dda2e6fd06a05d0f https://www.encodeproject.org/files/ENCFF332SCG/@@download/ENCFF332SCG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/9d9bcafc-8027-44b0-bc78-7d680e1af4fd/ENCFF332SCG.fastq.gz experiment not submitted to GEO ENCFF591BAY fastq reads ENCSR086OGH ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF332SCG 4677656905 Michael Snyder, Stanford 615445218c4d845e93fea578a7230422 https://www.encodeproject.org/files/ENCFF591BAY/@@download/ENCFF591BAY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/ec15f652-2fde-4deb-b54d-6b4ce5e6a7db/ENCFF591BAY.fastq.gz experiment not submitted to GEO ENCFF591QAG bigWig signal p-value ENCSR086OGH ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF778VJL 1229149264 Anshul Kundaje, Stanford 4a83f2ec8ed07194aae16fb2125d50b3 https://www.encodeproject.org/files/ENCFF591QAG/@@download/ENCFF591QAG.bigWig GRCh38 released s3://encode-public/2016/12/22/a9441946-951f-41f9-a235-8222a5d73587/ENCFF591QAG.bigWig experiment not submitted to GEO ENCFF778VJL bam alignments ENCSR086OGH ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF332SCG, ENCFF591BAY 6014216214 Anshul Kundaje, Stanford 4f04671a6fc6aaf7a1f52ce381e0bbc6 https://www.encodeproject.org/files/ENCFF778VJL/@@download/ENCFF778VJL.bam GRCh38 released s3://encode-public/2016/12/22/d18a1e9c-ef63-4d63-9a7c-cb8836d02f39/ENCFF778VJL.bam experiment not submitted to GEO ENCFF997HHO bigWig fold change over control ENCSR086OGH ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF778VJL 1396147459 Anshul Kundaje, Stanford 689b9a5828c53a594c75f6534a324a6c https://www.encodeproject.org/files/ENCFF997HHO/@@download/ENCFF997HHO.bigWig GRCh38 released s3://encode-public/2016/12/22/2d0c959d-4abc-49e1-b7a8-739bddd97aad/ENCFF997HHO.bigWig experiment not submitted to GEO ENCFF598USO fastq reads ENCSR999NKW ATAC-seq UBERON:0002367 prostate gland tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 1 ENCFF527XCY 3264084132 Michael Snyder, Stanford 647fe1bedcad0d6d3cc92783832cc57b https://www.encodeproject.org/files/ENCFF598USO/@@download/ENCFF598USO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/07/462308a7-4183-4c62-9bf2-5f2fb4ed6aba/ENCFF598USO.fastq.gz experiment not submitted to GEO ENCFF527XCY fastq reads ENCSR999NKW ATAC-seq UBERON:0002367 prostate gland tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 2 ENCFF598USO 3303618101 Michael Snyder, Stanford f417c79278ad73120082d41407423034 https://www.encodeproject.org/files/ENCFF527XCY/@@download/ENCFF527XCY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/07/c882664c-4bf0-4a58-905d-2f96300e6390/ENCFF527XCY.fastq.gz experiment not submitted to GEO ENCFF670GFY bam alignments ENCSR999NKW ATAC-seq UBERON:0002367 prostate gland tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF527XCY, ENCFF598USO 3119224857 Anshul Kundaje, Stanford 0acc29388903ad695b5e942355fce13f https://www.encodeproject.org/files/ENCFF670GFY/@@download/ENCFF670GFY.bam GRCh38 released s3://encode-public/2017/04/01/cc2cf00e-46f2-448b-ac03-cf52567deafe/ENCFF670GFY.bam experiment not submitted to GEO ENCFF492NWI bigWig signal p-value ENCSR999NKW ATAC-seq UBERON:0002367 prostate gland tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF670GFY 420304504 Anshul Kundaje, Stanford 0794f964ec93ba1ab43e41e181c3ed3d https://www.encodeproject.org/files/ENCFF492NWI/@@download/ENCFF492NWI.bigWig GRCh38 released s3://encode-public/2017/04/01/2aee3773-fcaf-4754-9f86-3cabfa6931c3/ENCFF492NWI.bigWig experiment not submitted to GEO ENCFF644FYW bigWig fold change over control ENCSR999NKW ATAC-seq UBERON:0002367 prostate gland tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF670GFY 483784334 Anshul Kundaje, Stanford 52423edc28e7fa3a79a1acd2c97e10bb https://www.encodeproject.org/files/ENCFF644FYW/@@download/ENCFF644FYW.bigWig GRCh38 released s3://encode-public/2017/04/01/c025347b-374e-40b1-a9ee-57759418ff6f/ENCFF644FYW.bigWig experiment not submitted to GEO ENCFF357PYB fastq reads ENCSR210NKB ATAC-seq UBERON:0000473 testis tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 2 ENCFF256FOG 3137727981 Michael Snyder, Stanford 3adaf9542ee9762713f0f5207f30f440 https://www.encodeproject.org/files/ENCFF357PYB/@@download/ENCFF357PYB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/28/97b96201-db07-48f0-93a7-0b7084e2e0d0/ENCFF357PYB.fastq.gz experiment not submitted to GEO ENCFF256FOG fastq reads ENCSR210NKB ATAC-seq UBERON:0000473 testis tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 1 ENCFF357PYB 2885207663 Michael Snyder, Stanford 56a97c26bda223ec5fc96cba3f196fe9 https://www.encodeproject.org/files/ENCFF256FOG/@@download/ENCFF256FOG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/28/382e878f-a31d-48fd-acd4-b29196d5bd66/ENCFF256FOG.fastq.gz experiment not submitted to GEO ENCFF048IOT bam alignments ENCSR210NKB ATAC-seq UBERON:0000473 testis tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF256FOG, ENCFF357PYB 4205988145 Anshul Kundaje, Stanford 1bc751e2e0af55e93e7970beaa5b240d https://www.encodeproject.org/files/ENCFF048IOT/@@download/ENCFF048IOT.bam GRCh38 released s3://encode-public/2017/02/09/f0652fd1-bd48-4109-b916-16055dcb149c/ENCFF048IOT.bam experiment not submitted to GEO ENCFF395GYH bigWig signal p-value ENCSR210NKB ATAC-seq UBERON:0000473 testis tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF048IOT 939251068 Anshul Kundaje, Stanford 00e71306ed1b2c5194ed72a4bd6dee10 https://www.encodeproject.org/files/ENCFF395GYH/@@download/ENCFF395GYH.bigWig GRCh38 released s3://encode-public/2017/02/09/e3e570cd-c72c-4061-a9bb-fcd5535e6b7f/ENCFF395GYH.bigWig experiment not submitted to GEO ENCFF422DLF bigWig fold change over control ENCSR210NKB ATAC-seq UBERON:0000473 testis tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF048IOT 988904564 Anshul Kundaje, Stanford 8360cb5dc86a5733a388dd51f572f5d4 https://www.encodeproject.org/files/ENCFF422DLF/@@download/ENCFF422DLF.bigWig GRCh38 released s3://encode-public/2017/02/09/933e8f68-c47c-4142-9f25-27730fc2e966/ENCFF422DLF.bigWig experiment not submitted to GEO ENCFF538JTF fastq reads ENCSR773USD ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 1 ENCFF442BMJ 2314343502 Michael Snyder, Stanford f566d389af455ee7513f7e3c7d35b9b9 https://www.encodeproject.org/files/ENCFF538JTF/@@download/ENCFF538JTF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/28/e92770a2-6126-4a85-9106-1fa9930ea658/ENCFF538JTF.fastq.gz experiment not submitted to GEO ENCFF442BMJ fastq reads ENCSR773USD ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 2 ENCFF538JTF 2497214791 Michael Snyder, Stanford 4043aa79c325ed2445eec8114d7013bf https://www.encodeproject.org/files/ENCFF442BMJ/@@download/ENCFF442BMJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/28/93334ebc-00cf-4b56-b966-502fc79fe51d/ENCFF442BMJ.fastq.gz experiment not submitted to GEO ENCFF135RTS bam alignments ENCSR773USD ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF442BMJ, ENCFF538JTF 3094147735 Anshul Kundaje, Stanford b1f8dd2e1672522c3a38063c9b1c22a7 https://www.encodeproject.org/files/ENCFF135RTS/@@download/ENCFF135RTS.bam GRCh38 released s3://encode-public/2017/02/08/92c8142e-ea03-4260-a607-9dbda8f10404/ENCFF135RTS.bam experiment not submitted to GEO ENCFF353OXO bigWig fold change over control ENCSR773USD ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF135RTS 712603368 Anshul Kundaje, Stanford d95246008fb2957ed7037c5b25c350ea https://www.encodeproject.org/files/ENCFF353OXO/@@download/ENCFF353OXO.bigWig GRCh38 released s3://encode-public/2017/02/08/8f6146d6-e2ef-4e38-8cc3-3aa34025d735/ENCFF353OXO.bigWig experiment not submitted to GEO ENCFF158OVK bigWig signal p-value ENCSR773USD ATAC-seq UBERON:0001150 body of pancreas tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF135RTS 760393577 Anshul Kundaje, Stanford 01b6820757955459aafb28cd0f320c5d https://www.encodeproject.org/files/ENCFF158OVK/@@download/ENCFF158OVK.bigWig GRCh38 released s3://encode-public/2017/02/08/b8a1c889-431c-44ed-82e5-6310b2a38995/ENCFF158OVK.bigWig experiment not submitted to GEO ENCFF898NRO fastq reads ENCSR903GMO ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF401VUV 1763940486 Bing Ren, UCSD f8a468dda8719bbe101a118602254d78 https://www.encodeproject.org/files/ENCFF898NRO/@@download/ENCFF898NRO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/a6ee675c-8773-40cd-9416-e124f2ae66e7/ENCFF898NRO.fastq.gz experiment not submitted to GEO ENCFF777UKE fastq reads ENCSR903GMO ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF721LGJ 1798724296 Bing Ren, UCSD 442635892046fa3e6f86d0b9c180b68a https://www.encodeproject.org/files/ENCFF777UKE/@@download/ENCFF777UKE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/f435b300-3522-4731-aefc-fd6af56dd0be/ENCFF777UKE.fastq.gz experiment not submitted to GEO ENCFF401VUV fastq reads ENCSR903GMO ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF898NRO 1601520229 Bing Ren, UCSD dc877b50afa576ac3c8b0e3a3ce5a260 https://www.encodeproject.org/files/ENCFF401VUV/@@download/ENCFF401VUV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/1233aec2-ccc7-4c9d-a3a6-341ff36df22c/ENCFF401VUV.fastq.gz experiment not submitted to GEO ENCFF721LGJ fastq reads ENCSR903GMO ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF777UKE 1653400576 Bing Ren, UCSD 1760991aaa63f19f4cc5e995059a4e08 https://www.encodeproject.org/files/ENCFF721LGJ/@@download/ENCFF721LGJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/6b412f65-be27-4c7c-b2cd-997370722052/ENCFF721LGJ.fastq.gz experiment not submitted to GEO ENCFF798QON bam alignments ENCSR903GMO ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF401VUV, ENCFF898NRO 3437320543 Anshul Kundaje, Stanford fa52a026e3cafd8176daad06ae19274b https://www.encodeproject.org/files/ENCFF798QON/@@download/ENCFF798QON.bam mm10 released s3://encode-public/2017/04/25/f7be4d12-b61f-4087-b567-979afb322c37/ENCFF798QON.bam experiment not submitted to GEO ENCFF592ZRO bam alignments ENCSR903GMO ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF721LGJ, ENCFF777UKE 3552153138 Anshul Kundaje, Stanford a4ab1a46e2c111100fc31a3c53ba7a97 https://www.encodeproject.org/files/ENCFF592ZRO/@@download/ENCFF592ZRO.bam mm10 released s3://encode-public/2017/04/25/33f27321-68c9-4c76-89aa-fe3f6bd2e1f0/ENCFF592ZRO.bam experiment not submitted to GEO ENCFF450ZSN bigWig signal p-value ENCSR903GMO ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF798QON 689838132 Anshul Kundaje, Stanford a12aa75c433b074db49cab25db436270 https://www.encodeproject.org/files/ENCFF450ZSN/@@download/ENCFF450ZSN.bigWig mm10 released s3://encode-public/2017/04/25/a9c8c657-66a5-43de-8da9-385e813ebeb6/ENCFF450ZSN.bigWig experiment not submitted to GEO ENCFF023RTK bigWig signal p-value ENCSR903GMO ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF592ZRO 663520880 Anshul Kundaje, Stanford f77892f60a3785dca0753b59c6f055ea https://www.encodeproject.org/files/ENCFF023RTK/@@download/ENCFF023RTK.bigWig mm10 released s3://encode-public/2017/04/25/4afcec56-032f-4e9f-ace8-9fe2666bdbd6/ENCFF023RTK.bigWig experiment not submitted to GEO ENCFF654YSF bigWig fold change over control ENCSR903GMO ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF798QON 778734055 Anshul Kundaje, Stanford 8c038ab3bf51d4f010cfef1844ad89a4 https://www.encodeproject.org/files/ENCFF654YSF/@@download/ENCFF654YSF.bigWig mm10 released s3://encode-public/2017/04/26/753a1dd9-457a-48f6-90fb-50253d9abf50/ENCFF654YSF.bigWig experiment not submitted to GEO ENCFF938RFY bigWig fold change over control ENCSR903GMO ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF592ZRO 785304939 Anshul Kundaje, Stanford 1db942e1c7340a4505aaf1589a4265b3 https://www.encodeproject.org/files/ENCFF938RFY/@@download/ENCFF938RFY.bigWig mm10 released s3://encode-public/2017/04/26/76085f6f-ae81-416a-9d35-f6087deac8e7/ENCFF938RFY.bigWig experiment not submitted to GEO ENCFF954MPR fastq reads ENCSR088UYE ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF824PVC 1660330784 Bing Ren, UCSD 918f03be9cb4a1f28a52ba8b755ded7f https://www.encodeproject.org/files/ENCFF954MPR/@@download/ENCFF954MPR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/42506550-8b56-4ffa-802e-fcf4175fdd5e/ENCFF954MPR.fastq.gz experiment not submitted to GEO ENCFF824PVC fastq reads ENCSR088UYE ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF954MPR 1841910384 Bing Ren, UCSD 1cb783c77e1458398c6af9b802fd6862 https://www.encodeproject.org/files/ENCFF824PVC/@@download/ENCFF824PVC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/af499171-c26b-4134-b925-914828b908f2/ENCFF824PVC.fastq.gz experiment not submitted to GEO ENCFF199WNL fastq reads ENCSR088UYE ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF968KUR 1716138115 Bing Ren, UCSD 46715389bc83d58832467aa3b2481521 https://www.encodeproject.org/files/ENCFF199WNL/@@download/ENCFF199WNL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/3b1cc1f4-2c76-4c7c-9756-f2561a2effc8/ENCFF199WNL.fastq.gz experiment not submitted to GEO ENCFF968KUR fastq reads ENCSR088UYE ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF199WNL 1864197193 Bing Ren, UCSD fb90eaf3aece2f489391ca01d60b5277 https://www.encodeproject.org/files/ENCFF968KUR/@@download/ENCFF968KUR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/e5ee292d-609f-4538-909b-1c461eb7d5d9/ENCFF968KUR.fastq.gz experiment not submitted to GEO ENCFF204CQS bam alignments ENCSR088UYE ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF199WNL, ENCFF968KUR 3659501853 Anshul Kundaje, Stanford 7984b7ac0dbc89166e4f15d0eda32bff https://www.encodeproject.org/files/ENCFF204CQS/@@download/ENCFF204CQS.bam mm10 released s3://encode-public/2017/04/25/5b50c52e-fd5c-4cc9-89dd-bbaab7e16107/ENCFF204CQS.bam experiment not submitted to GEO ENCFF185XPS bam alignments ENCSR088UYE ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF824PVC, ENCFF954MPR 3625883138 Anshul Kundaje, Stanford 6e954410aa6b5fde6743c83b62822dd5 https://www.encodeproject.org/files/ENCFF185XPS/@@download/ENCFF185XPS.bam mm10 released s3://encode-public/2017/04/25/bd07d4cb-e38e-4f3f-be84-ddc1bdf219df/ENCFF185XPS.bam experiment not submitted to GEO ENCFF145OQB bigWig signal p-value ENCSR088UYE ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF185XPS 732413380 Anshul Kundaje, Stanford f55fbad94925c209d87b9b4bd62bb878 https://www.encodeproject.org/files/ENCFF145OQB/@@download/ENCFF145OQB.bigWig mm10 released s3://encode-public/2017/04/25/d4b95ac7-3f2e-479a-af50-088a61769433/ENCFF145OQB.bigWig experiment not submitted to GEO ENCFF280GGO bigWig signal p-value ENCSR088UYE ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF204CQS 727667217 Anshul Kundaje, Stanford c5f6a71167b5967b4ccca9271b66dde0 https://www.encodeproject.org/files/ENCFF280GGO/@@download/ENCFF280GGO.bigWig mm10 released s3://encode-public/2017/04/25/88d95510-54af-41dc-bc09-d61b4585d30e/ENCFF280GGO.bigWig experiment not submitted to GEO ENCFF860QUH bigWig fold change over control ENCSR088UYE ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF185XPS 810090674 Anshul Kundaje, Stanford aec0890b4bdfa26e62a41a0ec9bbd0cf https://www.encodeproject.org/files/ENCFF860QUH/@@download/ENCFF860QUH.bigWig mm10 released s3://encode-public/2017/04/26/ba6d1ebe-8ebc-40a0-9937-07d675fa45f1/ENCFF860QUH.bigWig experiment not submitted to GEO ENCFF140WFP bigWig fold change over control ENCSR088UYE ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF204CQS 808279328 Anshul Kundaje, Stanford 1fd87aff4b14d8cb5a4fb7912d246c5b https://www.encodeproject.org/files/ENCFF140WFP/@@download/ENCFF140WFP.bigWig mm10 released s3://encode-public/2017/04/26/8f4bee89-a202-44bd-b3e8-6fd948e2e7f1/ENCFF140WFP.bigWig experiment not submitted to GEO ENCFF608AWT fastq reads ENCSR983JWA ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF847BCI 1754713248 Bing Ren, UCSD 9821884cad93266b361b58e1bb6c4b17 https://www.encodeproject.org/files/ENCFF608AWT/@@download/ENCFF608AWT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/fb12aefa-916c-4497-ba84-e957260aea13/ENCFF608AWT.fastq.gz experiment not submitted to GEO ENCFF847BCI fastq reads ENCSR983JWA ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF608AWT 1508682912 Bing Ren, UCSD f319944c679e82140e8aaf5a0bc318ab https://www.encodeproject.org/files/ENCFF847BCI/@@download/ENCFF847BCI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/88415b81-46d9-4137-a6a0-4263f7c9dcb6/ENCFF847BCI.fastq.gz experiment not submitted to GEO ENCFF551SAG fastq reads ENCSR983JWA ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF166QOA 1323303169 Bing Ren, UCSD 8df95b316a175fac2cb1171117cfa407 https://www.encodeproject.org/files/ENCFF551SAG/@@download/ENCFF551SAG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/92844b9e-83f6-477c-b575-ecaaa8df1336/ENCFF551SAG.fastq.gz experiment not submitted to GEO ENCFF166QOA fastq reads ENCSR983JWA ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF551SAG 1533421235 Bing Ren, UCSD 3f5587e8e44e261f59b190fba7b7f975 https://www.encodeproject.org/files/ENCFF166QOA/@@download/ENCFF166QOA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/cc085806-3b77-454b-a13b-c42f1d96a7a9/ENCFF166QOA.fastq.gz experiment not submitted to GEO ENCFF800LDK bam alignments ENCSR983JWA ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF608AWT, ENCFF847BCI 3211954165 Anshul Kundaje, Stanford 0cc559ba620a297894ea96bde6c8c6cd https://www.encodeproject.org/files/ENCFF800LDK/@@download/ENCFF800LDK.bam mm10 released s3://encode-public/2017/04/25/9aaffb77-4439-4222-9c58-9bc538d0911d/ENCFF800LDK.bam experiment not submitted to GEO ENCFF126AGJ bam alignments ENCSR983JWA ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF166QOA, ENCFF551SAG 2720256343 Anshul Kundaje, Stanford 582ee5b310a5d18ed55abfdb6ab5ad8c https://www.encodeproject.org/files/ENCFF126AGJ/@@download/ENCFF126AGJ.bam mm10 released s3://encode-public/2017/04/25/f9744d57-92ce-490f-9a49-159436a169a1/ENCFF126AGJ.bam experiment not submitted to GEO ENCFF303ZYB bigWig signal p-value ENCSR983JWA ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF800LDK 645736964 Anshul Kundaje, Stanford d99ca5ee6d4243abd714197e32687c34 https://www.encodeproject.org/files/ENCFF303ZYB/@@download/ENCFF303ZYB.bigWig mm10 released s3://encode-public/2017/04/25/f4cae2b9-a9be-4544-88cd-838205dfd984/ENCFF303ZYB.bigWig experiment not submitted to GEO ENCFF683VOE bigWig signal p-value ENCSR983JWA ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF126AGJ 459157804 Anshul Kundaje, Stanford 183ee4948d7a08f70563645cd69030e8 https://www.encodeproject.org/files/ENCFF683VOE/@@download/ENCFF683VOE.bigWig mm10 released s3://encode-public/2017/04/25/972c3e58-831c-47db-85d8-5d540ff91fb6/ENCFF683VOE.bigWig experiment not submitted to GEO ENCFF309CAW bigWig fold change over control ENCSR983JWA ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF800LDK 756758119 Anshul Kundaje, Stanford 35f0970f74680e4091e2e9e3d1972ac6 https://www.encodeproject.org/files/ENCFF309CAW/@@download/ENCFF309CAW.bigWig mm10 released s3://encode-public/2017/04/26/62d0d54e-6cbf-4deb-9ba7-46f48ca5d203/ENCFF309CAW.bigWig experiment not submitted to GEO ENCFF729JLP bigWig fold change over control ENCSR983JWA ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF126AGJ 607485331 Anshul Kundaje, Stanford aa77b36b3d31fde730523fed43870037 https://www.encodeproject.org/files/ENCFF729JLP/@@download/ENCFF729JLP.bigWig mm10 released s3://encode-public/2017/04/26/0fed7ec8-15bd-4c59-aa5d-86bf93933f47/ENCFF729JLP.bigWig experiment not submitted to GEO ENCFF058IAE fastq reads ENCSR836PUC ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF765HUX 1341474166 Bing Ren, UCSD a2b56f0017ba78502c0b758d68e952e0 https://www.encodeproject.org/files/ENCFF058IAE/@@download/ENCFF058IAE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/b6ca1468-1338-4028-b61c-cfc0ffa60a46/ENCFF058IAE.fastq.gz experiment not submitted to GEO ENCFF776GDQ fastq reads ENCSR836PUC ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF588XZG 1398463995 Bing Ren, UCSD b49d3f0f815d7c3ebbbdcac6832a8eff https://www.encodeproject.org/files/ENCFF776GDQ/@@download/ENCFF776GDQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/9c0457f9-7441-48ab-8f13-a311b907f927/ENCFF776GDQ.fastq.gz experiment not submitted to GEO ENCFF588XZG fastq reads ENCSR836PUC ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF776GDQ 1509986840 Bing Ren, UCSD 6d8bc346922ad7a806055095547a4487 https://www.encodeproject.org/files/ENCFF588XZG/@@download/ENCFF588XZG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/2158d626-9e27-410c-a280-3e732f2de071/ENCFF588XZG.fastq.gz experiment not submitted to GEO ENCFF765HUX fastq reads ENCSR836PUC ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF058IAE 1452939034 Bing Ren, UCSD 6bf7fd2a6c6be5396b9154469ed74e9e https://www.encodeproject.org/files/ENCFF765HUX/@@download/ENCFF765HUX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/b54587ec-3d14-4e6d-a7c7-e34d04fab3c0/ENCFF765HUX.fastq.gz experiment not submitted to GEO ENCFF130WMA bam alignments ENCSR836PUC ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF588XZG, ENCFF776GDQ 2816004830 Anshul Kundaje, Stanford d9407024bf7c85b8fa1afd60c5c87475 https://www.encodeproject.org/files/ENCFF130WMA/@@download/ENCFF130WMA.bam mm10 released s3://encode-public/2017/04/25/834bfd17-fe71-480f-8869-6d242d6f0222/ENCFF130WMA.bam experiment not submitted to GEO ENCFF224JRS bam alignments ENCSR836PUC ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF058IAE, ENCFF765HUX 2709025080 Anshul Kundaje, Stanford e9e09f9c9c55582260c5d46335b86886 https://www.encodeproject.org/files/ENCFF224JRS/@@download/ENCFF224JRS.bam mm10 released s3://encode-public/2017/04/25/c1ab54c5-29ac-4269-9f29-be96f8c9bb3e/ENCFF224JRS.bam experiment not submitted to GEO ENCFF741YXQ bigWig signal p-value ENCSR836PUC ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF224JRS 488002939 Anshul Kundaje, Stanford 5973ded96e4e180df2574590bb5ccdc3 https://www.encodeproject.org/files/ENCFF741YXQ/@@download/ENCFF741YXQ.bigWig mm10 released s3://encode-public/2017/04/25/cf54934b-cd27-4d38-b3a1-69bc6816cf55/ENCFF741YXQ.bigWig experiment not submitted to GEO ENCFF459CGS bigWig signal p-value ENCSR836PUC ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF130WMA 684434515 Anshul Kundaje, Stanford 13b48f9f068bea7d48a737898ed13d67 https://www.encodeproject.org/files/ENCFF459CGS/@@download/ENCFF459CGS.bigWig mm10 released s3://encode-public/2017/04/25/0ed6ac82-e2e4-4033-9f32-d11fea97d0fa/ENCFF459CGS.bigWig experiment not submitted to GEO ENCFF736QLZ bigWig fold change over control ENCSR836PUC ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF224JRS 621561449 Anshul Kundaje, Stanford 06f35f6bbca1744c8c82af10622629e6 https://www.encodeproject.org/files/ENCFF736QLZ/@@download/ENCFF736QLZ.bigWig mm10 released s3://encode-public/2017/04/26/97d4553c-51e6-4587-acc4-8934b75d4bc7/ENCFF736QLZ.bigWig experiment not submitted to GEO ENCFF960LTM bigWig fold change over control ENCSR836PUC ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF130WMA 658976660 Anshul Kundaje, Stanford 55b4a3c943f528e5bbe4331f77e2c185 https://www.encodeproject.org/files/ENCFF960LTM/@@download/ENCFF960LTM.bigWig mm10 released s3://encode-public/2017/04/26/5172df55-c9ec-40c5-9f7d-0a3fc1f6ec4b/ENCFF960LTM.bigWig experiment not submitted to GEO ENCFF267LVT fastq reads ENCSR468GUI ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF347QTV 1400104838 Bing Ren, UCSD eec5d03528b2c21dde804b8937f6a969 https://www.encodeproject.org/files/ENCFF267LVT/@@download/ENCFF267LVT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/4ccab76c-07e2-4749-b86e-b717f580056b/ENCFF267LVT.fastq.gz experiment not submitted to GEO ENCFF187YXW fastq reads ENCSR468GUI ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF865ZYW 1944099053 Bing Ren, UCSD 4641714111f55cde9243d2acc303aa62 https://www.encodeproject.org/files/ENCFF187YXW/@@download/ENCFF187YXW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/6d4c93af-51d6-412e-9087-4ddd454e6209/ENCFF187YXW.fastq.gz experiment not submitted to GEO ENCFF865ZYW fastq reads ENCSR468GUI ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF187YXW 2144766251 Bing Ren, UCSD 8afe662e63848a8aa564ae0d4a71e37c https://www.encodeproject.org/files/ENCFF865ZYW/@@download/ENCFF865ZYW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/c0d1c1b7-f5c4-49c5-93d9-f32432c22dbe/ENCFF865ZYW.fastq.gz experiment not submitted to GEO ENCFF347QTV fastq reads ENCSR468GUI ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF267LVT 1556814697 Bing Ren, UCSD cb725a3becde12b0cf42fa495c025ebc https://www.encodeproject.org/files/ENCFF347QTV/@@download/ENCFF347QTV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/a597acd9-afd8-4217-b485-494deb6b6d0a/ENCFF347QTV.fastq.gz experiment not submitted to GEO ENCFF100IBX bam alignments ENCSR468GUI ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF267LVT, ENCFF347QTV 3160558116 Anshul Kundaje, Stanford 843b36c0d448f1d01d121d9221cb7c83 https://www.encodeproject.org/files/ENCFF100IBX/@@download/ENCFF100IBX.bam mm10 released s3://encode-public/2017/04/25/bde00fa3-e162-4db3-991d-41512e263ba6/ENCFF100IBX.bam experiment not submitted to GEO ENCFF060YWL bam alignments ENCSR468GUI ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF187YXW, ENCFF865ZYW 4192028891 Anshul Kundaje, Stanford 7e866a502ad9ccb29a140930b66ffa2f https://www.encodeproject.org/files/ENCFF060YWL/@@download/ENCFF060YWL.bam mm10 released s3://encode-public/2017/04/25/7ad8a225-1a7a-4b70-937f-f27becdff86a/ENCFF060YWL.bam experiment not submitted to GEO ENCFF339WWB bigWig signal p-value ENCSR468GUI ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF100IBX 628623999 Anshul Kundaje, Stanford dc50f043d73e8a16eb0377b38c4047df https://www.encodeproject.org/files/ENCFF339WWB/@@download/ENCFF339WWB.bigWig mm10 released s3://encode-public/2017/04/25/5caf71d1-8fef-408d-be6e-7f0594db6af7/ENCFF339WWB.bigWig experiment not submitted to GEO ENCFF742JYA bigWig signal p-value ENCSR468GUI ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF060YWL 626546858 Anshul Kundaje, Stanford f36be96014764065acea3b53f8869869 https://www.encodeproject.org/files/ENCFF742JYA/@@download/ENCFF742JYA.bigWig mm10 released s3://encode-public/2017/04/25/94e1af7e-776e-4649-b830-cee6c5b343e2/ENCFF742JYA.bigWig experiment not submitted to GEO ENCFF801UXB bigWig fold change over control ENCSR468GUI ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF100IBX 732082161 Anshul Kundaje, Stanford b12c23f1c1d608c92bf7662400f6611c https://www.encodeproject.org/files/ENCFF801UXB/@@download/ENCFF801UXB.bigWig mm10 released s3://encode-public/2017/04/26/c0a5eb5d-9ceb-4239-82a1-70fd9c125210/ENCFF801UXB.bigWig experiment not submitted to GEO ENCFF190LKP bigWig fold change over control ENCSR468GUI ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF060YWL 927204220 Anshul Kundaje, Stanford 9026420fa45f63dea6893ee6fb0c08c3 https://www.encodeproject.org/files/ENCFF190LKP/@@download/ENCFF190LKP.bigWig mm10 released s3://encode-public/2017/04/26/ce57bf6d-bcc8-4a7d-a64a-3043ebc0e499/ENCFF190LKP.bigWig experiment not submitted to GEO ENCFF312UDS fastq reads ENCSR761TKU ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF401QEU 3959730588 Michael Snyder, Stanford 6ccffbd5684328d2bed0d3ddff4795c4 https://www.encodeproject.org/files/ENCFF312UDS/@@download/ENCFF312UDS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/a457ce33-ac9b-4046-99ad-5fbe2ecd9180/ENCFF312UDS.fastq.gz experiment not submitted to GEO ENCFF401QEU fastq reads ENCSR761TKU ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF312UDS 4154734332 Michael Snyder, Stanford 9e6375c1828d8e930cf5d88bde85d1df https://www.encodeproject.org/files/ENCFF401QEU/@@download/ENCFF401QEU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/690e6796-0e8e-4260-bd08-deab9b8fb274/ENCFF401QEU.fastq.gz experiment not submitted to GEO ENCFF460SRO bigWig signal p-value ENCSR761TKU ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF325VEG 1200982645 Anshul Kundaje, Stanford 1a1a806f729744c2831d54bd4acfde39 https://www.encodeproject.org/files/ENCFF460SRO/@@download/ENCFF460SRO.bigWig GRCh38 released s3://encode-public/2016/12/22/0b17a18d-4095-42d7-a2a7-22a822153f7a/ENCFF460SRO.bigWig experiment not submitted to GEO ENCFF325VEG bam alignments ENCSR761TKU ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF312UDS, ENCFF401QEU 5452339539 Anshul Kundaje, Stanford c34c3fa1c925d6c614ff70c7647b5ede https://www.encodeproject.org/files/ENCFF325VEG/@@download/ENCFF325VEG.bam GRCh38 released s3://encode-public/2016/12/22/ea1a364f-a736-431a-93b4-9d201f5cfeaa/ENCFF325VEG.bam experiment not submitted to GEO ENCFF284HMB bigWig fold change over control ENCSR761TKU ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF325VEG 1300221220 Anshul Kundaje, Stanford 058cb7aa475aaef050f354f5759b4bc6 https://www.encodeproject.org/files/ENCFF284HMB/@@download/ENCFF284HMB.bigWig GRCh38 released s3://encode-public/2016/12/22/5ec15835-ce97-4f55-baf9-e44942fe2593/ENCFF284HMB.bigWig experiment not submitted to GEO ENCFF963YIU fastq reads ENCSR273UFV ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF419LDW 1857920085 Bing Ren, UCSD a1005210b9a2dff93cfc9e555a7d8171 https://www.encodeproject.org/files/ENCFF963YIU/@@download/ENCFF963YIU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/b57f8024-1c02-4afa-96b1-8797f4e3b0c1/ENCFF963YIU.fastq.gz experiment not submitted to GEO ENCFF083TDB fastq reads ENCSR273UFV ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF680UAR 1691144102 Bing Ren, UCSD 10c05a097a891073b0f408440a8bc272 https://www.encodeproject.org/files/ENCFF083TDB/@@download/ENCFF083TDB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/f39325f1-d5fd-44b9-bc80-6ab761de17e2/ENCFF083TDB.fastq.gz experiment not submitted to GEO ENCFF419LDW fastq reads ENCSR273UFV ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF963YIU 1709394168 Bing Ren, UCSD 134da3be24392baf6525588e65288ef7 https://www.encodeproject.org/files/ENCFF419LDW/@@download/ENCFF419LDW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/576883b3-a5b7-4a0b-8188-b427b7254a49/ENCFF419LDW.fastq.gz experiment not submitted to GEO ENCFF680UAR fastq reads ENCSR273UFV ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF083TDB 1846168663 Bing Ren, UCSD cd13ed1b2b78682d5e62819fc4dafb70 https://www.encodeproject.org/files/ENCFF680UAR/@@download/ENCFF680UAR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/f697c79c-f76b-444f-9120-5a58f506278e/ENCFF680UAR.fastq.gz experiment not submitted to GEO ENCFF426VDN bam alignments ENCSR273UFV ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF419LDW, ENCFF963YIU 3601981505 Anshul Kundaje, Stanford 684e7a1ddd6a0c3c94e3a2b1f17e5b78 https://www.encodeproject.org/files/ENCFF426VDN/@@download/ENCFF426VDN.bam mm10 released s3://encode-public/2017/04/25/b4bb4869-fb03-408d-a523-5bde48fdd64f/ENCFF426VDN.bam experiment not submitted to GEO ENCFF275OKU bam alignments ENCSR273UFV ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF083TDB, ENCFF680UAR 3528662396 Anshul Kundaje, Stanford e2c5ef4c48e146e3c568ed8ee0c7a8c4 https://www.encodeproject.org/files/ENCFF275OKU/@@download/ENCFF275OKU.bam mm10 released s3://encode-public/2017/04/25/9c20c518-0003-47a7-9786-2a7cc6a595f0/ENCFF275OKU.bam experiment not submitted to GEO ENCFF685PIH bigWig signal p-value ENCSR273UFV ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF426VDN 626620128 Anshul Kundaje, Stanford 65d31b12c61adbc51f3057e72f15c913 https://www.encodeproject.org/files/ENCFF685PIH/@@download/ENCFF685PIH.bigWig mm10 released s3://encode-public/2017/04/25/6a660e46-5e74-4447-a066-209f16d5450f/ENCFF685PIH.bigWig experiment not submitted to GEO ENCFF526IGF bigWig signal p-value ENCSR273UFV ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF275OKU 687967294 Anshul Kundaje, Stanford ce3f36aee926842908bd636cfc5cf77a https://www.encodeproject.org/files/ENCFF526IGF/@@download/ENCFF526IGF.bigWig mm10 released s3://encode-public/2017/04/25/e89996a1-0796-4749-a7bb-e8422399bd54/ENCFF526IGF.bigWig experiment not submitted to GEO ENCFF752DQC bigWig fold change over control ENCSR273UFV ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF275OKU 758781521 Anshul Kundaje, Stanford 2835a560b91d55913bb217727da5d685 https://www.encodeproject.org/files/ENCFF752DQC/@@download/ENCFF752DQC.bigWig mm10 released s3://encode-public/2017/04/26/d42e1f5b-9c2a-4ff2-a56d-9ba5f5a76ef4/ENCFF752DQC.bigWig experiment not submitted to GEO ENCFF060HRT bigWig fold change over control ENCSR273UFV ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF426VDN 795008453 Anshul Kundaje, Stanford e2e07843811ebafb89d11004bb615e66 https://www.encodeproject.org/files/ENCFF060HRT/@@download/ENCFF060HRT.bigWig mm10 released s3://encode-public/2017/04/26/3a3ef39d-f3ee-435a-802c-50774c6f342e/ENCFF060HRT.bigWig experiment not submitted to GEO ENCFF524RSU fastq reads ENCSR414DVK ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2017-03-09 ENCODE 1 1 100 paired-ended 2 ENCFF547CYZ 2517369199 Michael Snyder, Stanford ac0e80f8bb90977c2a5f1c0fdfbe5645 https://www.encodeproject.org/files/ENCFF524RSU/@@download/ENCFF524RSU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/07/4dc8cbff-60a2-403f-8cb7-ae4a71e20e78/ENCFF524RSU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF547CYZ fastq reads ENCSR414DVK ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2017-03-09 ENCODE 1 1 100 paired-ended 1 ENCFF524RSU 2488714517 Michael Snyder, Stanford 93044ed43803a087df2b8bd69e7add37 https://www.encodeproject.org/files/ENCFF547CYZ/@@download/ENCFF547CYZ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/07/67c5f39a-46cc-42e8-b9e0-ff5917fe4184/ENCFF547CYZ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF374OSU bam alignments ENCSR414DVK ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2017-03-09 ENCODE 1 ENCFF524RSU, ENCFF547CYZ 1739581090 Anshul Kundaje, Stanford d68829a9f2c2a0f4e9012b77a5816415 https://www.encodeproject.org/files/ENCFF374OSU/@@download/ENCFF374OSU.bam GRCh38 released s3://encode-public/2017/06/01/ef247513-49d3-4649-ae3d-dfe75356b0dd/ENCFF374OSU.bam mismatched file status, experiment not submitted to GEO ENCFF111XAE bigWig signal p-value ENCSR414DVK ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2017-03-09 ENCODE 1 ENCFF374OSU 193560731 Anshul Kundaje, Stanford 698983ee23fb0338a6ef78bec1601f38 https://www.encodeproject.org/files/ENCFF111XAE/@@download/ENCFF111XAE.bigWig GRCh38 released s3://encode-public/2017/06/01/1186eeec-4609-4028-878b-bdf0261204ea/ENCFF111XAE.bigWig mismatched file status, experiment not submitted to GEO ENCFF095LJC bigWig fold change over control ENCSR414DVK ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2017-03-09 ENCODE 1 ENCFF374OSU 250996630 Anshul Kundaje, Stanford 475f4e82a6175c3a3d4881be42ec951d https://www.encodeproject.org/files/ENCFF095LJC/@@download/ENCFF095LJC.bigWig GRCh38 released s3://encode-public/2017/06/01/bc5eda4e-5c5d-4061-a4ac-2366e2900a09/ENCFF095LJC.bigWig mismatched file status, experiment not submitted to GEO ENCFF059UER fastq reads ENCSR914DTI ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF261YIK 2643964202 Michael Snyder, Stanford 4ad4cc312fbd523353a37dcf0d68ba9e https://www.encodeproject.org/files/ENCFF059UER/@@download/ENCFF059UER.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/31/17e8206f-75c5-4433-8735-d9fc2bfeb2cd/ENCFF059UER.fastq.gz experiment not submitted to GEO ENCFF261YIK fastq reads ENCSR914DTI ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF059UER 3008654595 Michael Snyder, Stanford 9bbd97cfc96f11cd525b00e591677daf https://www.encodeproject.org/files/ENCFF261YIK/@@download/ENCFF261YIK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/10/31/3069c448-ff21-4f92-815d-f6b9edddd091/ENCFF261YIK.fastq.gz experiment not submitted to GEO ENCFF105ASY bam alignments ENCSR914DTI ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF059UER, ENCFF261YIK 3255883977 Anshul Kundaje, Stanford 71610738292d29312a39379829d8ccff https://www.encodeproject.org/files/ENCFF105ASY/@@download/ENCFF105ASY.bam GRCh38 released s3://encode-public/2016/12/22/a8105730-9864-435a-94ad-8515497e5b3d/ENCFF105ASY.bam experiment not submitted to GEO ENCFF247KWO bigWig fold change over control ENCSR914DTI ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF105ASY 785387619 Anshul Kundaje, Stanford 05c74d1c2673e6f4ea7efe2d599bf805 https://www.encodeproject.org/files/ENCFF247KWO/@@download/ENCFF247KWO.bigWig GRCh38 released s3://encode-public/2016/12/22/ba2cf04e-e383-4e53-8a1b-f1c2d86ca7ee/ENCFF247KWO.bigWig experiment not submitted to GEO ENCFF983MMK bigWig signal p-value ENCSR914DTI ATAC-seq UBERON:0002046 thyroid gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF105ASY 805120079 Anshul Kundaje, Stanford f46b75dfceab223bcf4cbb9069a55dfe https://www.encodeproject.org/files/ENCFF983MMK/@@download/ENCFF983MMK.bigWig GRCh38 released s3://encode-public/2016/12/22/60559d48-6813-41c6-b68e-70e19c1251ee/ENCFF983MMK.bigWig experiment not submitted to GEO ENCFF935EXE fastq reads ENCSR609GST ATAC-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 1 ENCFF251FZX 3178199205 Michael Snyder, Stanford 8bcc0f14ad2d2f78bfdaeec1c55239ff https://www.encodeproject.org/files/ENCFF935EXE/@@download/ENCFF935EXE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/07/eef641b3-cc45-4a48-ba10-b6cd8f9cac85/ENCFF935EXE.fastq.gz experiment not submitted to GEO ENCFF251FZX fastq reads ENCSR609GST ATAC-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 1 100 paired-ended 2 ENCFF935EXE 3178529357 Michael Snyder, Stanford 8bbe5fd627e638945246aa24206c5906 https://www.encodeproject.org/files/ENCFF251FZX/@@download/ENCFF251FZX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/02/07/f06f4cb1-b1a6-4941-b8a2-a60d012a01cd/ENCFF251FZX.fastq.gz experiment not submitted to GEO ENCFF762MNF bam alignments ENCSR609GST ATAC-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF251FZX, ENCFF935EXE 4033862732 Anshul Kundaje, Stanford 5664847a570126ef43fc5dd2149ec33c https://www.encodeproject.org/files/ENCFF762MNF/@@download/ENCFF762MNF.bam GRCh38 released s3://encode-public/2017/04/01/68cfc7a3-4842-4a50-b210-9d8dfb638666/ENCFF762MNF.bam experiment not submitted to GEO ENCFF317TWD bigWig signal p-value ENCSR609GST ATAC-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF762MNF 542944456 Anshul Kundaje, Stanford 8889a2c64131ed534b48c0d3f808af67 https://www.encodeproject.org/files/ENCFF317TWD/@@download/ENCFF317TWD.bigWig GRCh38 released s3://encode-public/2017/04/01/78610eb3-6e5b-464a-9a35-456104bcec13/ENCFF317TWD.bigWig experiment not submitted to GEO ENCFF903OLJ bigWig fold change over control ENCSR609GST ATAC-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens DNA False 2017-06-21 ENCODE 1 ENCFF762MNF 696504668 Anshul Kundaje, Stanford 1bc4c012903fd73b1854f9b4ec0ac478 https://www.encodeproject.org/files/ENCFF903OLJ/@@download/ENCFF903OLJ.bigWig GRCh38 released s3://encode-public/2017/04/01/538b69f7-b0c6-4fb9-ac9f-f40bf592ec73/ENCFF903OLJ.bigWig experiment not submitted to GEO ENCFF266VLC fastq reads ENCSR798FDL ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF868CEL 2240498830 Bing Ren, UCSD de58e8b05aed2c1d987381883fafdbf6 https://www.encodeproject.org/files/ENCFF266VLC/@@download/ENCFF266VLC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/68205185-e957-4274-8a6f-5e61c13ff994/ENCFF266VLC.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF868CEL fastq reads ENCSR798FDL ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF266VLC 2081937819 Bing Ren, UCSD 448a8192efb289c25e0c81a336c0b3e5 https://www.encodeproject.org/files/ENCFF868CEL/@@download/ENCFF868CEL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/31919c45-e333-4d56-96a0-540354246585/ENCFF868CEL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF673MIM fastq reads ENCSR798FDL ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF657XRO 1260588645 Bing Ren, UCSD 5532d7ccd4ea1ae9e18e1bde86095a5a https://www.encodeproject.org/files/ENCFF673MIM/@@download/ENCFF673MIM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/761c8db8-e529-4971-b009-9a907a0a349b/ENCFF673MIM.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF657XRO fastq reads ENCSR798FDL ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF673MIM 1389406407 Bing Ren, UCSD 824b5b7b220678be5ba3a76b72629c5a https://www.encodeproject.org/files/ENCFF657XRO/@@download/ENCFF657XRO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/8db02319-946c-45b0-9c0b-bd6ca0f31c4e/ENCFF657XRO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF442YHM fastq reads ENCSR993QKC ATAC-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus DNA False 2017-03-07 GGR 1 2 50 paired-ended 1 ENCFF379WRX 1368499868 Christina Leslie, MSKCC ffa3ab703de309b467b018d0e8457f3e https://www.encodeproject.org/files/ENCFF442YHM/@@download/ENCFF442YHM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/05/68554e33-80dd-4534-9731-383f2b2af3e0/ENCFF442YHM.fastq.gz NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF177WUQ fastq reads ENCSR993QKC ATAC-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus DNA False 2017-03-07 GGR 1 1 50 paired-ended 1 ENCFF688QCB 942877427 Christina Leslie, MSKCC 945ce12932e077d60537ae890db68791 https://www.encodeproject.org/files/ENCFF177WUQ/@@download/ENCFF177WUQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/05/bfa92ed7-88b2-4dfb-8098-3a72eb748925/ENCFF177WUQ.fastq.gz NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF688QCB fastq reads ENCSR993QKC ATAC-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus DNA False 2017-03-07 GGR 1 1 50 paired-ended 2 ENCFF177WUQ 956377200 Christina Leslie, MSKCC 7115d58b247d1e2268b7cccfccad0893 https://www.encodeproject.org/files/ENCFF688QCB/@@download/ENCFF688QCB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/05/be386799-16d4-4eda-99c2-10495b78808d/ENCFF688QCB.fastq.gz NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF379WRX fastq reads ENCSR993QKC ATAC-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus DNA False 2017-03-07 GGR 1 2 50 paired-ended 2 ENCFF442YHM 1386552069 Christina Leslie, MSKCC e303b63ae3bf81cb8f4239743f35282d https://www.encodeproject.org/files/ENCFF379WRX/@@download/ENCFF379WRX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/05/e35d9568-e7ce-4661-9e4b-41e416feec6b/ENCFF379WRX.fastq.gz NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF031FPB bam alignments ENCSR993QKC ATAC-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF379WRX, ENCFF442YHM 1269624402 Christina Leslie, MSKCC 1f4d7e9ff46b3f351423f1dd15748d49 https://www.encodeproject.org/files/ENCFF031FPB/@@download/ENCFF031FPB.bam mm10 released s3://encode-public/2016/12/05/ac04c8dd-efca-4451-bf5e-8bbd19679aa9/ENCFF031FPB.bam NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF787SKI bam alignments ENCSR993QKC ATAC-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF177WUQ, ENCFF688QCB 954695078 Christina Leslie, MSKCC d2b000c35cd4dcf40dd47aec23a867a6 https://www.encodeproject.org/files/ENCFF787SKI/@@download/ENCFF787SKI.bam mm10 released s3://encode-public/2016/12/05/f4b1e9ae-92d7-4599-a35c-adf4cf196c97/ENCFF787SKI.bam NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF816CJU bed narrowPeak peaks ENCSR993QKC ATAC-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus DNA False 2017-03-07 GGR 1 ENCFF031FPB, ENCFF787SKI 1896073 Christina Leslie, MSKCC 617d8a426e9452e9e22413cd83bce00b https://www.encodeproject.org/files/ENCFF816CJU/@@download/ENCFF816CJU.bed.gz mm10 released s3://encode-public/2017/01/09/75875f20-185a-45cb-b868-a85dafc6ada3/ENCFF816CJU.bed.gz NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF020COS bam alignments ENCSR139OYS ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF388LOY, ENCFF419RSJ, GRCh38_no_alt_analysis_set_GCA_000001405.15 1095840758 Tim Reddy, Duke 3f237fe781fa7fdea284c9e4ff9b930f https://www.encodeproject.org/files/ENCFF020COS/@@download/ENCFF020COS.bam GRCh38 released s3://encode-public/2018/03/28/cc41308f-1317-4e86-aac1-b0ad57288329/ENCFF020COS.bam ENCFF758ORC bam alignments ENCSR139OYS ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF419RSJ, ENCFF463IRI, GRCh38_no_alt_analysis_set_GCA_000001405.15 1352917718 Tim Reddy, Duke a3900f160dba6458436b255c3675fd07 https://www.encodeproject.org/files/ENCFF758ORC/@@download/ENCFF758ORC.bam GRCh38 released s3://encode-public/2018/03/28/4a9bfaab-4629-4d99-a66f-377b5ebd1c83/ENCFF758ORC.bam ENCFF548YMP bed narrowPeak peaks ENCSR139OYS ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF809EKV 2158052 Tim Reddy, Duke bb05b872c447768baf223abe71be61e5 https://www.encodeproject.org/files/ENCFF548YMP/@@download/ENCFF548YMP.bed.gz GRCh38 released s3://encode-public/2018/03/28/ead28180-9cf2-4f3d-a050-ad56f7512b67/ENCFF548YMP.bed.gz ENCFF809EKV bam alignments ENCSR139OYS ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF419RSJ, ENCFF545DRH, GRCh38_no_alt_analysis_set_GCA_000001405.15 1247010844 Tim Reddy, Duke afa5d74f5ba108bed9b8e05db5eafcda https://www.encodeproject.org/files/ENCFF809EKV/@@download/ENCFF809EKV.bam GRCh38 released s3://encode-public/2018/03/28/6a997122-ddd6-42fe-8462-a66d39e843ba/ENCFF809EKV.bam ENCFF284EEQ bed narrowPeak peaks ENCSR139OYS ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF758ORC 1695865 Tim Reddy, Duke 27de0569b82214a9c4c0b618265e8ca8 https://www.encodeproject.org/files/ENCFF284EEQ/@@download/ENCFF284EEQ.bed.gz GRCh38 released s3://encode-public/2018/03/28/998aca26-c3b6-419a-959f-030cf2dd4e55/ENCFF284EEQ.bed.gz ENCFF700KSJ bed narrowPeak peaks ENCSR139OYS ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF020COS 2330569 Tim Reddy, Duke 913324b5a7cfaedcd8c7420ab6ff7f1b https://www.encodeproject.org/files/ENCFF700KSJ/@@download/ENCFF700KSJ.bed.gz GRCh38 released s3://encode-public/2018/03/28/3bf290c4-2ba5-4bae-ab5c-337b3f62cb29/ENCFF700KSJ.bed.gz ENCFF411QDI bigBed narrowPeak peaks ENCSR139OYS ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF548YMP 4768696 Tim Reddy, Duke de32fe7d5f3fc103945fea4e68b72db1 https://www.encodeproject.org/files/ENCFF411QDI/@@download/ENCFF411QDI.bigBed GRCh38 released s3://encode-public/2018/03/28/36c9d8ec-8fad-4fdb-b53f-f624d331b43c/ENCFF411QDI.bigBed ENCFF900GVO bigWig signal of unique reads ENCSR139OYS ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 ENCFF809EKV 304317630 Tim Reddy, Duke f92da06ddcb0cc4abdfc481cbad6cd95 https://www.encodeproject.org/files/ENCFF900GVO/@@download/ENCFF900GVO.bigWig GRCh38 released s3://encode-public/2018/03/28/845c8400-6622-4419-896c-d9e8b670f0b8/ENCFF900GVO.bigWig ENCFF729UUS bigBed narrowPeak peaks ENCSR139OYS ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF284EEQ 3866782 Tim Reddy, Duke 2ba7f860f839317152c1e6a0a1c58687 https://www.encodeproject.org/files/ENCFF729UUS/@@download/ENCFF729UUS.bigBed GRCh38 released s3://encode-public/2018/03/28/5eb1f924-f1f9-4616-8506-2137025ff581/ENCFF729UUS.bigBed ENCFF145LPD bigBed narrowPeak peaks ENCSR139OYS ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF700KSJ 5119907 Tim Reddy, Duke b6e3b9357ebc449b2e79a6034e0ac335 https://www.encodeproject.org/files/ENCFF145LPD/@@download/ENCFF145LPD.bigBed GRCh38 released s3://encode-public/2018/03/28/4b558fac-ff78-4b53-bb79-d2824685dc2a/ENCFF145LPD.bigBed ENCFF545DRH fastq reads ENCSR139OYS ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 0.01% digitonin False 2018-04-23 GGR 2 1 51 single-ended 2119156867 Tim Reddy, Duke 2d57e980790eb47313df58be4d5bf334 SRA:SRR7140565 https://www.encodeproject.org/files/ENCFF545DRH/@@download/ENCFF545DRH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/03/28/6ac0e3a3-666a-4124-9321-27f1b59dc781/ENCFF545DRH.fastq.gz ENCFF327HNA bigWig signal of unique reads ENCSR139OYS ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 ENCFF758ORC 326768894 Tim Reddy, Duke a837aca4156979b6cb3872d19f8dc53b https://www.encodeproject.org/files/ENCFF327HNA/@@download/ENCFF327HNA.bigWig GRCh38 released s3://encode-public/2018/03/28/8bd17062-9bf1-43de-84dc-c59fd66a503a/ENCFF327HNA.bigWig ENCFF258LUB bigWig signal of unique reads ENCSR139OYS ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 ENCFF020COS 266557798 Tim Reddy, Duke 3fefd0ef62b0be52d9eb616310e44af5 https://www.encodeproject.org/files/ENCFF258LUB/@@download/ENCFF258LUB.bigWig GRCh38 released s3://encode-public/2018/03/28/6843fd9e-f609-4e1a-8d67-c95b0e79d121/ENCFF258LUB.bigWig ENCFF463IRI fastq reads ENCSR139OYS ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 0.01% digitonin False 2018-04-23 GGR 1 1 51 single-ended 2195057721 Tim Reddy, Duke 1d89ab77bb61562e7e4419957edf36a0 SRA:SRR7140567 https://www.encodeproject.org/files/ENCFF463IRI/@@download/ENCFF463IRI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/03/28/2d4867d9-dc2c-45dd-9844-b6c8b1eea8e7/ENCFF463IRI.fastq.gz ENCFF388LOY fastq reads ENCSR139OYS ATAC-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour DNA 0.01% digitonin False 2018-04-23 GGR 3 1 51 single-ended 1994643584 Tim Reddy, Duke ec522b746836d3fb38b1da0888893b3c SRA:SRR7140566 https://www.encodeproject.org/files/ENCFF388LOY/@@download/ENCFF388LOY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2018/03/28/225158f6-c634-4780-b8df-ffbadf45a135/ENCFF388LOY.fastq.gz ENCFF103PCA fastq reads ENCSR896XIN ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF508LJX 1244284365 Bing Ren, UCSD e41eb6c3b86d7336d61d0cde50c58e4c https://www.encodeproject.org/files/ENCFF103PCA/@@download/ENCFF103PCA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/b87da3f2-8dec-4160-8321-0885c9880b8f/ENCFF103PCA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF506NVN fastq reads ENCSR896XIN ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF732HZX 985427119 Bing Ren, UCSD 1bb324cf4487c53e9304b5afd3573109 https://www.encodeproject.org/files/ENCFF506NVN/@@download/ENCFF506NVN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/737a0855-c66a-4fae-aac3-39ed3a767255/ENCFF506NVN.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF732HZX fastq reads ENCSR896XIN ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF506NVN 934464105 Bing Ren, UCSD 7f4dddb882e778e7531a4ef4d17ad796 https://www.encodeproject.org/files/ENCFF732HZX/@@download/ENCFF732HZX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/b2eccf4f-2804-4d1a-8355-9fc6aa3c8592/ENCFF732HZX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF508LJX fastq reads ENCSR896XIN ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF103PCA 1183478148 Bing Ren, UCSD 638e4c87643ef5c3b3548e4fe20ce29f https://www.encodeproject.org/files/ENCFF508LJX/@@download/ENCFF508LJX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/208f6340-64a2-4ac0-beab-d14a84b5d59b/ENCFF508LJX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF103VYG fastq reads ENCSR788TRR ATAC-seq UBERON:0010414 omental fat pad tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF439TXE 4795109160 Michael Snyder, Stanford 6483d276347b730ae18f8806c3901c1c https://www.encodeproject.org/files/ENCFF103VYG/@@download/ENCFF103VYG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/fba58ae9-83cd-4e9e-8328-410bb87b1496/ENCFF103VYG.fastq.gz experiment not submitted to GEO ENCFF439TXE fastq reads ENCSR788TRR ATAC-seq UBERON:0010414 omental fat pad tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF103VYG 4587607494 Michael Snyder, Stanford a808b7ab0d28215dac73b075598dcdd9 https://www.encodeproject.org/files/ENCFF439TXE/@@download/ENCFF439TXE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/cddd85e5-d379-424b-ac9e-ed85a9e62bd5/ENCFF439TXE.fastq.gz experiment not submitted to GEO ENCFF733PNQ bam alignments ENCSR788TRR ATAC-seq UBERON:0010414 omental fat pad tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF103VYG, ENCFF439TXE 5766360467 Anshul Kundaje, Stanford 4c4db06b6e26968b49d0d45578ea8124 https://www.encodeproject.org/files/ENCFF733PNQ/@@download/ENCFF733PNQ.bam GRCh38 released s3://encode-public/2016/12/22/29764939-58cd-44e0-81b3-e3299aa8a0a5/ENCFF733PNQ.bam experiment not submitted to GEO ENCFF655HXL bigWig fold change over control ENCSR788TRR ATAC-seq UBERON:0010414 omental fat pad tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF733PNQ 1349164476 Anshul Kundaje, Stanford 332e61a95f5cbf50b953cf620dcbfa18 https://www.encodeproject.org/files/ENCFF655HXL/@@download/ENCFF655HXL.bigWig GRCh38 released s3://encode-public/2016/12/22/7f81c0c0-b552-41b0-ab5f-f8fb6566d4d1/ENCFF655HXL.bigWig experiment not submitted to GEO ENCFF180NBT bigWig signal p-value ENCSR788TRR ATAC-seq UBERON:0010414 omental fat pad tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF733PNQ 1327655481 Anshul Kundaje, Stanford 2ed32738441e60c8d09988dcea0d2e86 https://www.encodeproject.org/files/ENCFF180NBT/@@download/ENCFF180NBT.bigWig GRCh38 released s3://encode-public/2016/12/22/fc59bfd5-9c90-462a-86b2-029b72ce7141/ENCFF180NBT.bigWig experiment not submitted to GEO ENCFF457QZC fastq reads ENCSR548KIL ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF716WPO 2677561531 Michael Snyder, Stanford 036b8e4ae03b08bd638ce1029fff5681 https://www.encodeproject.org/files/ENCFF457QZC/@@download/ENCFF457QZC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/d1728ee3-b46c-4bb1-9c82-b08f0673f142/ENCFF457QZC.fastq.gz experiment not submitted to GEO ENCFF716WPO fastq reads ENCSR548KIL ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF457QZC 2690636398 Michael Snyder, Stanford 1ff86ff2d3f4baaa07c28fba19591853 https://www.encodeproject.org/files/ENCFF716WPO/@@download/ENCFF716WPO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/bb98f237-c0d1-4a7a-baf3-d582cf1b3414/ENCFF716WPO.fastq.gz experiment not submitted to GEO ENCFF173WNV fastq reads ENCSR548KIL ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF927OCA 2763375593 Michael Snyder, Stanford 9010d51dfa3cba17654408891341cf4e https://www.encodeproject.org/files/ENCFF173WNV/@@download/ENCFF173WNV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/16b9c8ab-1082-45f9-8b6d-f48df847f1a4/ENCFF173WNV.fastq.gz experiment not submitted to GEO ENCFF927OCA fastq reads ENCSR548KIL ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF173WNV 2650986498 Michael Snyder, Stanford 51f132720a38ba91bbcb9c836e07ff6b https://www.encodeproject.org/files/ENCFF927OCA/@@download/ENCFF927OCA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/34354a80-e4e3-4850-b1a2-f654d16ded6c/ENCFF927OCA.fastq.gz experiment not submitted to GEO ENCFF711SUI bam alignments ENCSR548KIL ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF173WNV, ENCFF457QZC, ENCFF716WPO, ENCFF927OCA 4765133137 Anshul Kundaje, Stanford 989c2899cb9a36636d1d711c880071be https://www.encodeproject.org/files/ENCFF711SUI/@@download/ENCFF711SUI.bam GRCh38 released s3://encode-public/2016/12/22/a5461a0c-ba61-468a-955b-fbe766b34228/ENCFF711SUI.bam experiment not submitted to GEO ENCFF956ZBY bigWig signal p-value ENCSR548KIL ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF711SUI 650825358 Anshul Kundaje, Stanford 96ebcba32ff39d923967cb22d907fd25 https://www.encodeproject.org/files/ENCFF956ZBY/@@download/ENCFF956ZBY.bigWig GRCh38 released s3://encode-public/2016/12/22/2736e103-2312-4f35-b797-deb4af16ddec/ENCFF956ZBY.bigWig experiment not submitted to GEO ENCFF983OJK bigWig fold change over control ENCSR548KIL ATAC-seq UBERON:0002369 adrenal gland tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF711SUI 803024428 Anshul Kundaje, Stanford 7f814e45e352e88180fd6bc0633ba7f9 https://www.encodeproject.org/files/ENCFF983OJK/@@download/ENCFF983OJK.bigWig GRCh38 released s3://encode-public/2016/12/22/3cc58e38-d8a4-4682-ab96-fda24a287881/ENCFF983OJK.bigWig experiment not submitted to GEO ENCFF520LZN fastq reads ENCSR802GEV ATAC-seq UBERON:0002037 cerebellum tissue Homo sapiens DNA see document ATAC buffer True 2017-10-09 ENCODE 1 1 50 single-ended 552735113 Barbara Wold, Caltech fcd79b9ac9226949166cedec66a5a34c https://www.encodeproject.org/files/ENCFF520LZN/@@download/ENCFF520LZN.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/b8f84306-851e-40b1-ba4a-f6092eb9d6f8/ENCFF520LZN.fastq.gz experiment not submitted to GEO unreplicated experiment ENCFF232DPD fastq reads ENCSR802GEV ATAC-seq UBERON:0002037 cerebellum tissue Homo sapiens DNA see document ATAC buffer True 2017-10-09 ENCODE 1 1 50 single-ended 540645346 Barbara Wold, Caltech e87e6912d8c18c3d05d9dd29bc7df6dc https://www.encodeproject.org/files/ENCFF232DPD/@@download/ENCFF232DPD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/f08784c2-a026-41ac-a173-6f7480b369ce/ENCFF232DPD.fastq.gz experiment not submitted to GEO unreplicated experiment ENCFF589ZNO fastq reads ENCSR802GEV ATAC-seq UBERON:0002037 cerebellum tissue Homo sapiens DNA see document ATAC buffer True 2017-10-09 ENCODE 1 1 50 single-ended 769824454 Barbara Wold, Caltech 4f5607b11f8d0862943e66c1ef790722 https://www.encodeproject.org/files/ENCFF589ZNO/@@download/ENCFF589ZNO.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/4e25c15f-e26c-4eb5-800c-3c9fc718c786/ENCFF589ZNO.fastq.gz experiment not submitted to GEO unreplicated experiment ENCFF949EKP fastq reads ENCSR802GEV ATAC-seq UBERON:0002037 cerebellum tissue Homo sapiens DNA see document ATAC buffer True 2017-10-09 ENCODE 1 1 50 single-ended 782712670 Barbara Wold, Caltech aebd2ed8e39ea6210321c625486e16ab https://www.encodeproject.org/files/ENCFF949EKP/@@download/ENCFF949EKP.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/8c2a944d-efe1-48e2-abf5-f0568bebe4d7/ENCFF949EKP.fastq.gz experiment not submitted to GEO unreplicated experiment ENCFF114WRE bam alignments ENCSR802GEV ATAC-seq UBERON:0002037 cerebellum tissue Homo sapiens DNA see document ATAC buffer True 2017-10-09 ENCODE 1 ENCFF232DPD, ENCFF520LZN, ENCFF589ZNO, ENCFF949EKP 1160414113 Anshul Kundaje, Stanford 2fa91977e839d115775f4335b45f98f9 https://www.encodeproject.org/files/ENCFF114WRE/@@download/ENCFF114WRE.bam GRCh38 released s3://encode-public/2017/05/11/5bbb8b93-a014-4222-b900-ed8756807e3f/ENCFF114WRE.bam experiment not submitted to GEO unreplicated experiment ENCFF541YRE bigWig fold change over control ENCSR802GEV ATAC-seq UBERON:0002037 cerebellum tissue Homo sapiens DNA see document ATAC buffer True 2017-10-09 ENCODE 1 ENCFF114WRE 295210638 Anshul Kundaje, Stanford 0abd19e76cd16c7acc71d539627fb71e https://www.encodeproject.org/files/ENCFF541YRE/@@download/ENCFF541YRE.bigWig GRCh38 released s3://encode-public/2017/05/11/70e95f10-0a72-4e59-aae0-98eff7713b4f/ENCFF541YRE.bigWig experiment not submitted to GEO unreplicated experiment ENCFF057XST bigWig signal p-value ENCSR802GEV ATAC-seq UBERON:0002037 cerebellum tissue Homo sapiens DNA see document ATAC buffer True 2017-10-09 ENCODE 1 ENCFF114WRE 229836443 Anshul Kundaje, Stanford 76ef018f4d3d1fe0b72a8a9f3a5f12da https://www.encodeproject.org/files/ENCFF057XST/@@download/ENCFF057XST.bigWig GRCh38 released s3://encode-public/2017/05/11/ed31f553-77d8-4a97-a68a-7edd52553c71/ENCFF057XST.bigWig experiment not submitted to GEO unreplicated experiment ENCFF336EQO fastq reads ENCSR217NOA ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF308AMG 1310434296 Bing Ren, UCSD d60aad64be033607ebe1e50a97577e07 https://www.encodeproject.org/files/ENCFF336EQO/@@download/ENCFF336EQO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/1e385ddc-ee84-4d7d-96a0-9e28fbaf3527/ENCFF336EQO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF308AMG fastq reads ENCSR217NOA ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF336EQO 1535723160 Bing Ren, UCSD a67ab9fe07c55038d510ef1d6d272816 https://www.encodeproject.org/files/ENCFF308AMG/@@download/ENCFF308AMG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/536f6d89-7cdd-4bc2-813c-f62951534849/ENCFF308AMG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF843JWW fastq reads ENCSR217NOA ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF577DNF 1033388860 Bing Ren, UCSD 1c2d6ce4b32350e3bf11be3629a5f0bd https://www.encodeproject.org/files/ENCFF843JWW/@@download/ENCFF843JWW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/27ed12b6-c310-4cdf-9b0e-7f54e9309b6a/ENCFF843JWW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF577DNF fastq reads ENCSR217NOA ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF843JWW 1211518728 Bing Ren, UCSD b1159e59922de32c35f537cd9979e63a https://www.encodeproject.org/files/ENCFF577DNF/@@download/ENCFF577DNF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/a7535248-ecc4-493b-97e8-bc1b3851592e/ENCFF577DNF.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF982ITD fastq reads ENCSR258JCL ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF230XCO 2183957342 Michael Snyder, Stanford 7b56d98a254ed9f364ca85b766dcf181 https://www.encodeproject.org/files/ENCFF982ITD/@@download/ENCFF982ITD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/54a452ca-e113-411c-9cab-5a8cb0df2f5c/ENCFF982ITD.fastq.gz experiment not submitted to GEO ENCFF230XCO fastq reads ENCSR258JCL ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF982ITD 2252661433 Michael Snyder, Stanford 328a3ffa502d671f45ff7323ed368072 https://www.encodeproject.org/files/ENCFF230XCO/@@download/ENCFF230XCO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/df8d14a9-eca3-4530-9b6a-956edda4a10d/ENCFF230XCO.fastq.gz experiment not submitted to GEO ENCFF047AOY fastq reads ENCSR258JCL ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF791GUO 2159742765 Michael Snyder, Stanford caab1a91c2642ba0b8d0bb13c2cb089c https://www.encodeproject.org/files/ENCFF047AOY/@@download/ENCFF047AOY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/ff50cd91-5965-4124-a58d-6692c76bb535/ENCFF047AOY.fastq.gz experiment not submitted to GEO ENCFF791GUO fastq reads ENCSR258JCL ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF047AOY 2160137135 Michael Snyder, Stanford a598dee665191ad66516cfd78e88fccd https://www.encodeproject.org/files/ENCFF791GUO/@@download/ENCFF791GUO.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/11/01/8e61c705-2604-4f8b-8f63-ec7c9673180c/ENCFF791GUO.fastq.gz experiment not submitted to GEO ENCFF858PLS bam alignments ENCSR258JCL ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF047AOY, ENCFF230XCO, ENCFF791GUO, ENCFF982ITD 6758326150 Anshul Kundaje, Stanford 5c9e1c27ef46eb48b1f58de63c9fa010 https://www.encodeproject.org/files/ENCFF858PLS/@@download/ENCFF858PLS.bam GRCh38 released s3://encode-public/2016/12/22/381180d6-9fa2-4d68-bc5a-47ac3bc19de1/ENCFF858PLS.bam experiment not submitted to GEO ENCFF700NIW bigWig signal p-value ENCSR258JCL ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF858PLS 849282484 Anshul Kundaje, Stanford e0c52b96eb57bbeb964618d591345d8c https://www.encodeproject.org/files/ENCFF700NIW/@@download/ENCFF700NIW.bigWig GRCh38 released s3://encode-public/2016/12/22/f286af11-761c-495f-a17a-d32f7d05353e/ENCFF700NIW.bigWig experiment not submitted to GEO ENCFF397CZA bigWig fold change over control ENCSR258JCL ATAC-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens DNA False 2016-10-31 ENCODE 1 ENCFF858PLS 1057606990 Anshul Kundaje, Stanford aa7b735675351cb40be5fbfdf6fc26bf https://www.encodeproject.org/files/ENCFF397CZA/@@download/ENCFF397CZA.bigWig GRCh38 released s3://encode-public/2016/12/22/51b3608c-ae86-4063-bced-2d54c27e5f8f/ENCFF397CZA.bigWig experiment not submitted to GEO ENCFF133CWQ fastq reads ENCSR257PGU ATAC-seq CL:0000557 granulocyte monocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 48 single-ended 4369567493 Ross Hardison, PennState 05376c847c791cbf94eddb79d6e23364 https://www.encodeproject.org/files/ENCFF133CWQ/@@download/ENCFF133CWQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/9daf11a5-a1f4-4bbe-88af-9991af247217/ENCFF133CWQ.fastq.gz inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF248WQE fastq reads ENCSR257PGU ATAC-seq CL:0000557 granulocyte monocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 48 single-ended 5412588330 Ross Hardison, PennState 6aff4defc3d8dcd1a1bd631f16e02f6e https://www.encodeproject.org/files/ENCFF248WQE/@@download/ENCFF248WQE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/27b74310-5fe3-489b-b72c-b65d3dc93684/ENCFF248WQE.fastq.gz inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF655PLY bam alignments ENCSR257PGU ATAC-seq CL:0000557 granulocyte monocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF133CWQ 3062146416 Ross Hardison, PennState 2d33c8d42dc3f3b6bbc23e91f02799b4 https://www.encodeproject.org/files/ENCFF655PLY/@@download/ENCFF655PLY.bam mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/45f460d4-fa07-4169-912c-5f2251ebd62f/ENCFF655PLY.bam inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF568UAN bam alignments ENCSR257PGU ATAC-seq CL:0000557 granulocyte monocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF248WQE 3973182391 Ross Hardison, PennState 4272485965add43ab888412d075a6485 https://www.encodeproject.org/files/ENCFF568UAN/@@download/ENCFF568UAN.bam mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/eab90611-d086-4c05-b7b7-6e7f4bd19823/ENCFF568UAN.bam inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF604XBU bigWig signal of all reads ENCSR257PGU ATAC-seq CL:0000557 granulocyte monocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF655PLY 2958979190 Ross Hardison, PennState 79e403c72db83f4939e7bf10cef0aeac https://www.encodeproject.org/files/ENCFF604XBU/@@download/ENCFF604XBU.bigWig mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/9038aa2d-12d3-49b1-b571-4fa04d17232a/ENCFF604XBU.bigWig inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF445TLV bigBed bed3+ peaks ENCSR257PGU ATAC-seq CL:0000557 granulocyte monocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF655PLY 3650126 Ross Hardison, PennState 836fb092fba51bf8479707d8499b1600 https://www.encodeproject.org/files/ENCFF445TLV/@@download/ENCFF445TLV.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/15f56d69-b466-4358-a702-33e70d924625/ENCFF445TLV.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF132ZVG bigBed narrowPeak open chromatin regions ENCSR257PGU ATAC-seq CL:0000557 granulocyte monocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF655PLY 5845929 Ross Hardison, PennState d9d1746a38a2be7fb743310437250abf https://www.encodeproject.org/files/ENCFF132ZVG/@@download/ENCFF132ZVG.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/fce4d3ab-0445-4d43-8348-77ff93d3be01/ENCFF132ZVG.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF933VLI bigWig signal of all reads ENCSR257PGU ATAC-seq CL:0000557 granulocyte monocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF568UAN 3230831628 Ross Hardison, PennState 98c1e10c4744fa60c4bd3ab15ca927f9 https://www.encodeproject.org/files/ENCFF933VLI/@@download/ENCFF933VLI.bigWig mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/3914f723-6acc-4076-a8ff-37ad6bb74798/ENCFF933VLI.bigWig inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF432TUQ bigBed bed3+ peaks ENCSR257PGU ATAC-seq CL:0000557 granulocyte monocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF568UAN 2584568 Ross Hardison, PennState b7d427fe56ae07f3f96c7b98bc886a76 https://www.encodeproject.org/files/ENCFF432TUQ/@@download/ENCFF432TUQ.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/564c25ef-42d9-47f6-b704-d5fce7254552/ENCFF432TUQ.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF559XVB bigBed narrowPeak open chromatin regions ENCSR257PGU ATAC-seq CL:0000557 granulocyte monocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF568UAN 8038225 Ross Hardison, PennState 50b19fe8398ec57f82f02e03a6cd8a9d https://www.encodeproject.org/files/ENCFF559XVB/@@download/ENCFF559XVB.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/1325733a-5b53-4c3d-aedb-d626843f57a1/ENCFF559XVB.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF643GYA bigBed bed3+ filtered peaks ENCSR257PGU ATAC-seq CL:0000557 granulocyte monocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF445TLV, ENCFF790DJT 3598946 Ross Hardison, PennState 5d8fced450c3e0465bbd075a79fdd4ca https://www.encodeproject.org/files/ENCFF643GYA/@@download/ENCFF643GYA.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/24fdaf0f-d179-4b13-89dc-df482a6174e8/ENCFF643GYA.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF937GCS bigBed narrowPeak filtered regions ENCSR257PGU ATAC-seq CL:0000557 granulocyte monocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 ENCFF132ZVG, ENCFF790DJT 3157674 Ross Hardison, PennState fb1ca5c9a842c4869eaeae280ff29ccb https://www.encodeproject.org/files/ENCFF937GCS/@@download/ENCFF937GCS.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/c676d368-a058-4971-9f36-5661d963d0b9/ENCFF937GCS.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF080YTV bigBed narrowPeak filtered regions ENCSR257PGU ATAC-seq CL:0000557 granulocyte monocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF559XVB, ENCFF790DJT 3083627 Ross Hardison, PennState 423133f8fb5f7856d658b77e068a02d5 https://www.encodeproject.org/files/ENCFF080YTV/@@download/ENCFF080YTV.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/457617ec-1d98-408f-b4fb-854f62b87166/ENCFF080YTV.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF566QHX bigBed bed3+ filtered peaks ENCSR257PGU ATAC-seq CL:0000557 granulocyte monocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 ENCFF432TUQ, ENCFF790DJT 2539731 Ross Hardison, PennState a639dfa30b8e4544acc0787fda920bbe https://www.encodeproject.org/files/ENCFF566QHX/@@download/ENCFF566QHX.bigBed mm10-minimal Illumina HiSeq 2000 archived s3://encode-public/2016/03/29/8bb61022-fcc3-495b-a2fc-435117e84fce/ENCFF566QHX.bigBed inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF942VKT fastq reads ENCSR257PGU ATAC-seq CL:0000557 granulocyte monocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 48 single-ended 1916505943 Ross Hardison, PennState 70a699cc8cbf8cc8624fedc2276ea04c https://www.encodeproject.org/files/ENCFF942VKT/@@download/ENCFF942VKT.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/27/a2e7954b-a01e-44a3-b4f9-8ec578ce6a2b/ENCFF942VKT.fastq.gz inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF408OOS bigWig fold change over control ENCSR257PGU ATAC-seq CL:0000557 granulocyte monocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF027ORZ 352527249 Anshul Kundaje, Stanford 0aeda3c165d6b89f3fa791b185f08095 https://www.encodeproject.org/files/ENCFF408OOS/@@download/ENCFF408OOS.bigWig mm10 released s3://encode-public/2017/05/11/ba888923-f87d-41fb-abfe-fbafc8bea33d/ENCFF408OOS.bigWig inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF714DBE bigWig fold change over control ENCSR257PGU ATAC-seq CL:0000557 granulocyte monocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF432LQV 494396875 Anshul Kundaje, Stanford 0c7806d80828ade9b50edf19dc2dd8f0 https://www.encodeproject.org/files/ENCFF714DBE/@@download/ENCFF714DBE.bigWig mm10 released s3://encode-public/2017/05/11/51b0bdab-2426-4b73-a0b9-dc5f3f24c2e7/ENCFF714DBE.bigWig inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF432LQV bam alignments ENCSR257PGU ATAC-seq CL:0000557 granulocyte monocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF248WQE 1972565568 Anshul Kundaje, Stanford 389ad68d77043b628b3468eb83ef6384 https://www.encodeproject.org/files/ENCFF432LQV/@@download/ENCFF432LQV.bam mm10 released s3://encode-public/2017/05/11/77444223-78c9-4329-9b16-fad1417e7664/ENCFF432LQV.bam inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF027ORZ bam alignments ENCSR257PGU ATAC-seq CL:0000557 granulocyte monocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF133CWQ, ENCFF942VKT 1418126878 Anshul Kundaje, Stanford 89ae63179d35c47c2090c517f2433f71 https://www.encodeproject.org/files/ENCFF027ORZ/@@download/ENCFF027ORZ.bam mm10 released s3://encode-public/2017/05/11/ca65c947-919b-431f-b9ef-aefb60ba71bb/ENCFF027ORZ.bam inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF352KEU bigWig signal p-value ENCSR257PGU ATAC-seq CL:0000557 granulocyte monocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 ENCFF027ORZ 329007956 Anshul Kundaje, Stanford 22b2f42c8c7a52bfad2c832801e6d87c https://www.encodeproject.org/files/ENCFF352KEU/@@download/ENCFF352KEU.bigWig mm10 released s3://encode-public/2017/05/11/ca3cc972-7edd-4f67-9043-bbfbe9f6a423/ENCFF352KEU.bigWig inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF627LFF bigWig signal p-value ENCSR257PGU ATAC-seq CL:0000557 granulocyte monocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 ENCFF432LQV 543997369 Anshul Kundaje, Stanford aa9ae3aac08cd739feb1d92e6bf2bb1a https://www.encodeproject.org/files/ENCFF627LFF/@@download/ENCFF627LFF.bigWig mm10 released s3://encode-public/2017/05/11/eb048a2d-286f-417c-88cc-fdf2bd1be3fc/ENCFF627LFF.bigWig inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF507XBJ fastq reads ENCSR377YDY ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF156CTY 1138662556 Bing Ren, UCSD 883b303a12f01a0a3a6f7728755adabe https://www.encodeproject.org/files/ENCFF507XBJ/@@download/ENCFF507XBJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/414d310b-a643-4eef-bbe7-948ea8181c55/ENCFF507XBJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF332GCF fastq reads ENCSR377YDY ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF672BYU 1419830279 Bing Ren, UCSD 1410073d69b8d8f34b02846ff6899270 https://www.encodeproject.org/files/ENCFF332GCF/@@download/ENCFF332GCF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/68628ef7-4956-47cf-ad20-b00dc13aad53/ENCFF332GCF.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF672BYU fastq reads ENCSR377YDY ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF332GCF 1496631184 Bing Ren, UCSD 13d8e8613baab902973187cc3df415f8 https://www.encodeproject.org/files/ENCFF672BYU/@@download/ENCFF672BYU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/9e320c8f-568e-4360-bcbb-eabc85bebdc2/ENCFF672BYU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF156CTY fastq reads ENCSR377YDY ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF507XBJ 1072160985 Bing Ren, UCSD d0e6bc8c0aa1fb18c248bb04653a4b41 https://www.encodeproject.org/files/ENCFF156CTY/@@download/ENCFF156CTY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/8524b4b7-f4c0-42ab-a3c0-250edca49dfd/ENCFF156CTY.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF903DYC fastq reads ENCSR729FNL ATAC-seq UBERON:0022353 posterior cingulate cortex tissue Homo sapiens DNA see document ATAC buffer True 2017-10-09 ENCODE 1 1 50 single-ended 1436790922 Barbara Wold, Caltech 493cae61c9ca5f3c64fbbcffd723e21e https://www.encodeproject.org/files/ENCFF903DYC/@@download/ENCFF903DYC.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/b0bd2d3a-79bb-4d80-81d0-17061203292a/ENCFF903DYC.fastq.gz experiment not submitted to GEO unreplicated experiment ENCFF330CLR fastq reads ENCSR729FNL ATAC-seq UBERON:0022353 posterior cingulate cortex tissue Homo sapiens DNA see document ATAC buffer True 2017-10-09 ENCODE 1 1 50 single-ended 1404807955 Barbara Wold, Caltech bca749709a0cba57e8f5c135dba34489 https://www.encodeproject.org/files/ENCFF330CLR/@@download/ENCFF330CLR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/2d02359f-4f7a-41f2-9ee9-9be512bce712/ENCFF330CLR.fastq.gz experiment not submitted to GEO unreplicated experiment ENCFF893GGG bigWig signal p-value ENCSR729FNL ATAC-seq UBERON:0022353 posterior cingulate cortex tissue Homo sapiens DNA see document ATAC buffer True 2017-10-09 ENCODE 1 ENCFF682RLN 288740983 Anshul Kundaje, Stanford 84e4f98ce6037b264551c4372bc43c7e https://www.encodeproject.org/files/ENCFF893GGG/@@download/ENCFF893GGG.bigWig GRCh38 released s3://encode-public/2017/05/11/dddacd83-1703-483a-811c-baa8d372328f/ENCFF893GGG.bigWig experiment not submitted to GEO unreplicated experiment ENCFF682RLN bam alignments ENCSR729FNL ATAC-seq UBERON:0022353 posterior cingulate cortex tissue Homo sapiens DNA see document ATAC buffer True 2017-10-09 ENCODE 1 ENCFF330CLR, ENCFF903DYC 1243761668 Anshul Kundaje, Stanford fc658ff83c44d4eec0b59632d9d19710 https://www.encodeproject.org/files/ENCFF682RLN/@@download/ENCFF682RLN.bam GRCh38 released s3://encode-public/2017/05/11/d99139e4-69f3-42d7-aa88-c3cbdbbf1866/ENCFF682RLN.bam experiment not submitted to GEO unreplicated experiment ENCFF326LON bigWig fold change over control ENCSR729FNL ATAC-seq UBERON:0022353 posterior cingulate cortex tissue Homo sapiens DNA see document ATAC buffer True 2017-10-09 ENCODE 1 ENCFF682RLN 301174368 Anshul Kundaje, Stanford d79c7d95de43630caa9d7a7cf5480a01 https://www.encodeproject.org/files/ENCFF326LON/@@download/ENCFF326LON.bigWig GRCh38 released s3://encode-public/2017/05/11/ccdf5a20-3e55-4ac2-9735-47bd205692cd/ENCFF326LON.bigWig experiment not submitted to GEO unreplicated experiment ENCFF110KAU fastq reads ENCSR551WBK ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF698GFS 1044443528 Bing Ren, UCSD 2eda1427864b6644e7d0b838094127bc https://www.encodeproject.org/files/ENCFF110KAU/@@download/ENCFF110KAU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/da9887a6-db7a-417a-ab87-f446c2e89718/ENCFF110KAU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF637TUL fastq reads ENCSR551WBK ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF283VKJ 783072776 Bing Ren, UCSD 1ff306779a80d4a8ff9f106cfe6a7b6f https://www.encodeproject.org/files/ENCFF637TUL/@@download/ENCFF637TUL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/2f1eeb7f-8313-4099-9dfe-6d9a7aa719df/ENCFF637TUL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF283VKJ fastq reads ENCSR551WBK ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF637TUL 831270591 Bing Ren, UCSD 26ee6860ffb46fe6dd40e9f6afde120a https://www.encodeproject.org/files/ENCFF283VKJ/@@download/ENCFF283VKJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/30871e19-54ef-49c1-a4b8-75c3a2d0253f/ENCFF283VKJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF698GFS fastq reads ENCSR551WBK ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF110KAU 972874225 Bing Ren, UCSD 6b4437f4df095cb07653e9279dd7862c https://www.encodeproject.org/files/ENCFF698GFS/@@download/ENCFF698GFS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/f76afa56-0828-4c41-8971-db5efb2112cd/ENCFF698GFS.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF726JSJ fastq reads ENCSR700QBR ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF461GHH 1006543878 Bing Ren, UCSD 059990d93e1369edaf054bc7cd978eab https://www.encodeproject.org/files/ENCFF726JSJ/@@download/ENCFF726JSJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/ccfc4f68-53b3-4226-b9ab-52ccfae99149/ENCFF726JSJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF461GHH fastq reads ENCSR700QBR ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF726JSJ 1181798415 Bing Ren, UCSD ebbaf4690a6b2b0fa7240d271cfa88d0 https://www.encodeproject.org/files/ENCFF461GHH/@@download/ENCFF461GHH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/496cb411-d5b8-4328-8a84-eeba2bf71aa0/ENCFF461GHH.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF945IYI fastq reads ENCSR700QBR ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF111RFS 1933256658 Bing Ren, UCSD 686a2c243a9b851fbae2b5142398bb1d https://www.encodeproject.org/files/ENCFF945IYI/@@download/ENCFF945IYI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/596eed54-dcc4-43fc-a2c5-1bb86379707c/ENCFF945IYI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF111RFS fastq reads ENCSR700QBR ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF945IYI 1752772653 Bing Ren, UCSD 56b6548606395e2b59da9dd9e9bcaaee https://www.encodeproject.org/files/ENCFF111RFS/@@download/ENCFF111RFS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/1820f524-af44-460a-92bd-a2caa6630d04/ENCFF111RFS.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF775DFR fastq reads ENCSR355SGJ ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF543BUC 4602850556 Michael Snyder, Stanford bdd37b02792706bf9b8768e29b4d2ad3 https://www.encodeproject.org/files/ENCFF775DFR/@@download/ENCFF775DFR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/569d5f14-d3d0-47f1-993a-286576425029/ENCFF775DFR.fastq.gz experiment not submitted to GEO ENCFF543BUC fastq reads ENCSR355SGJ ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF775DFR 4799433875 Michael Snyder, Stanford cf0f0c17f0774d2e093e9afd85651aa2 https://www.encodeproject.org/files/ENCFF543BUC/@@download/ENCFF543BUC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/037aa938-3e5e-41fd-8f69-70df8056ce06/ENCFF543BUC.fastq.gz experiment not submitted to GEO ENCFF736KFN bam alignments ENCSR355SGJ ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF543BUC, ENCFF775DFR 5959114265 Anshul Kundaje, Stanford 2e72fb265251fa56ad9a782457a1467e https://www.encodeproject.org/files/ENCFF736KFN/@@download/ENCFF736KFN.bam GRCh38 released s3://encode-public/2016/12/22/055d3f0f-7b04-42ca-b0eb-66ba41a4ad70/ENCFF736KFN.bam experiment not submitted to GEO ENCFF402SCK bigWig signal p-value ENCSR355SGJ ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF736KFN 1301385944 Anshul Kundaje, Stanford 627716bfe37464e95f6c23d66924404a https://www.encodeproject.org/files/ENCFF402SCK/@@download/ENCFF402SCK.bigWig GRCh38 released s3://encode-public/2016/12/22/39348eef-6b06-4226-988b-26fdb91478fc/ENCFF402SCK.bigWig experiment not submitted to GEO ENCFF861YLY bigWig fold change over control ENCSR355SGJ ATAC-seq UBERON:0001159 sigmoid colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF736KFN 1355663823 Anshul Kundaje, Stanford b9e422c2d74c38453135c25888619fed https://www.encodeproject.org/files/ENCFF861YLY/@@download/ENCFF861YLY.bigWig GRCh38 released s3://encode-public/2016/12/22/aa25a44e-6df7-4458-bdd4-b53f0482bd43/ENCFF861YLY.bigWig experiment not submitted to GEO ENCFF216RFR fastq reads ENCSR846ZBX ATAC-seq UBERON:0008367 breast epithelium tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF488ELU 4895250873 Michael Snyder, Stanford e027bfddd9c13a87c36c48d6ca8f556b https://www.encodeproject.org/files/ENCFF216RFR/@@download/ENCFF216RFR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/54f03323-36a6-4a1c-aecb-43f31b179d32/ENCFF216RFR.fastq.gz experiment not submitted to GEO ENCFF488ELU fastq reads ENCSR846ZBX ATAC-seq UBERON:0008367 breast epithelium tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF216RFR 4542212323 Michael Snyder, Stanford 9cdb3f9a7ff53dd2db70550fa56ce6af https://www.encodeproject.org/files/ENCFF488ELU/@@download/ENCFF488ELU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/6aa29458-2ff8-43a0-aba4-21cd63217323/ENCFF488ELU.fastq.gz experiment not submitted to GEO ENCFF482CAN bam alignments ENCSR846ZBX ATAC-seq UBERON:0008367 breast epithelium tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF216RFR, ENCFF488ELU 6275955197 Anshul Kundaje, Stanford f885b096c54dc1075731a4d55c082404 https://www.encodeproject.org/files/ENCFF482CAN/@@download/ENCFF482CAN.bam GRCh38 released s3://encode-public/2016/12/22/90a4fc31-9f45-47be-afad-cb6369435154/ENCFF482CAN.bam experiment not submitted to GEO ENCFF513DQW bigWig signal p-value ENCSR846ZBX ATAC-seq UBERON:0008367 breast epithelium tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF482CAN 1251226941 Anshul Kundaje, Stanford af9afbb2b1efece9c0be3359bb161bfc https://www.encodeproject.org/files/ENCFF513DQW/@@download/ENCFF513DQW.bigWig GRCh38 released s3://encode-public/2016/12/22/5676d124-9034-4c0f-acad-d73d7099cbf6/ENCFF513DQW.bigWig experiment not submitted to GEO ENCFF056HIV bigWig fold change over control ENCSR846ZBX ATAC-seq UBERON:0008367 breast epithelium tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF482CAN 1378077501 Anshul Kundaje, Stanford d3a1fb6519816b8dfe5d337d9fc132cb https://www.encodeproject.org/files/ENCFF056HIV/@@download/ENCFF056HIV.bigWig GRCh38 released s3://encode-public/2016/12/22/167f95da-f893-4e95-8510-9463e4a93535/ENCFF056HIV.bigWig experiment not submitted to GEO ENCFF520IRQ fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 1 ENCFF907KNE 1313451188 Michael Snyder, Stanford a231f409e3aefbc84cf1a9a32cec2812 https://www.encodeproject.org/files/ENCFF520IRQ/@@download/ENCFF520IRQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/00f27515-028d-4e16-9bc7-e77ceb02e84b/ENCFF520IRQ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF546WBL fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 1 ENCFF858GTH 1572855184 Michael Snyder, Stanford f4de9d523edfd61efdeaa4215f41526c https://www.encodeproject.org/files/ENCFF546WBL/@@download/ENCFF546WBL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/b47bd533-5322-4666-8532-1ca245d543cf/ENCFF546WBL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF747LPX fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 1 ENCFF334TQS 2485311072 Michael Snyder, Stanford c0d62d7c38291d3d8ae37d8a680253ac https://www.encodeproject.org/files/ENCFF747LPX/@@download/ENCFF747LPX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/2a42da53-a763-4abc-89f8-21239ad91d75/ENCFF747LPX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF581SDL fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 1 ENCFF157FMZ 782842586 Michael Snyder, Stanford 0c6e91b9d8c9eb7035ed21fdc449ad61 https://www.encodeproject.org/files/ENCFF581SDL/@@download/ENCFF581SDL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/202e95a5-a93a-4a8b-a450-6aeca17de827/ENCFF581SDL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF642LCD fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 1 ENCFF132WCZ 1568212883 Michael Snyder, Stanford ddc8c8066ee39f6e3b1858966762eb26 https://www.encodeproject.org/files/ENCFF642LCD/@@download/ENCFF642LCD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/5be9a49f-ed48-44fa-98d6-76c07f4d0d43/ENCFF642LCD.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF334TQS fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 1 1 76 paired-ended 2 ENCFF747LPX 2720442246 Michael Snyder, Stanford 1b50314056b8b14c39f457dc82791a14 https://www.encodeproject.org/files/ENCFF334TQS/@@download/ENCFF334TQS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/1cb193c6-db29-43d9-94f7-f2a388f888a3/ENCFF334TQS.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF336ZDA fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 2 ENCFF680VLN 1375532753 Michael Snyder, Stanford d154ca03901f24b117189efb13d7f2ba https://www.encodeproject.org/files/ENCFF336ZDA/@@download/ENCFF336ZDA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/e20fc23b-3219-482e-95b9-a4d3e903fc4a/ENCFF336ZDA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF927RRE fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 1 ENCFF534OEW 951896293 Michael Snyder, Stanford 8bda0a7f42caeb2da67e90cc3397b044 https://www.encodeproject.org/files/ENCFF927RRE/@@download/ENCFF927RRE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/47d6621b-0fe6-4268-b00c-9fcbf7491c54/ENCFF927RRE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF751BYE fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 1 ENCFF665ASH 969283207 Michael Snyder, Stanford 11278dc2250ffa0a6fdc60776c6f2706 https://www.encodeproject.org/files/ENCFF751BYE/@@download/ENCFF751BYE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d2e5b462-444d-424a-89b6-84fe11fb50ec/ENCFF751BYE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF858GTH fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 1 2 76 paired-ended 2 ENCFF546WBL 1714420880 Michael Snyder, Stanford 0085e759cd42406b708fed2a5b9dc125 https://www.encodeproject.org/files/ENCFF858GTH/@@download/ENCFF858GTH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/41ec4f2e-3b98-4e8f-bb2d-5601f49ce2bb/ENCFF858GTH.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF617ALL fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 1 ENCFF688WUF 583337153 Michael Snyder, Stanford a7549dcc537d9e48d2c8230e888d0fd4 https://www.encodeproject.org/files/ENCFF617ALL/@@download/ENCFF617ALL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/b3c3025a-0301-473d-975c-5c0bf7942a59/ENCFF617ALL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF680VLN fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 2 2 76 paired-ended 1 ENCFF336ZDA 1242113580 Michael Snyder, Stanford 757db4fee70912e639d4fb39c7d5c73b https://www.encodeproject.org/files/ENCFF680VLN/@@download/ENCFF680VLN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/b23a5e02-8d7d-4e32-8ba2-b8b129638683/ENCFF680VLN.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF665ASH fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 2 4 76 paired-ended 2 ENCFF751BYE 1025168632 Michael Snyder, Stanford a7bb1195c9892e89d9a77747eeb79863 https://www.encodeproject.org/files/ENCFF665ASH/@@download/ENCFF665ASH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/feab04f8-f3e1-404c-a5f6-c27092a43644/ENCFF665ASH.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF907KNE fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 1 3 76 paired-ended 2 ENCFF520IRQ 1376212306 Michael Snyder, Stanford ff8cb70e14397b8a43d853087e6bda5a https://www.encodeproject.org/files/ENCFF907KNE/@@download/ENCFF907KNE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/b633b8a2-95b1-4c07-881f-7393fc3e07bb/ENCFF907KNE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF985OET fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 2 6 76 paired-ended 1 ENCFF193XZE 853069652 Michael Snyder, Stanford c44bd9c043da4a6ce34c681f76ed8320 https://www.encodeproject.org/files/ENCFF985OET/@@download/ENCFF985OET.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d9bbb1de-f887-4746-a663-019b0b978246/ENCFF985OET.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF232ZIV fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 2 7 76 paired-ended 2 ENCFF750HPU 1164420214 Michael Snyder, Stanford 729b17934ffe1e13a92a595b6312c1e9 https://www.encodeproject.org/files/ENCFF232ZIV/@@download/ENCFF232ZIV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/98132b43-cd03-4cdb-a69f-5b14bcfc6618/ENCFF232ZIV.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF157FMZ fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 1 4 76 paired-ended 2 ENCFF581SDL 824841337 Michael Snyder, Stanford d44a788bdcfc76084cda9e482110752f https://www.encodeproject.org/files/ENCFF157FMZ/@@download/ENCFF157FMZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/285b9b63-eb95-4c6a-bb8b-f8f7ccdca221/ENCFF157FMZ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF132WCZ fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 2 1 76 paired-ended 2 ENCFF642LCD 1706878511 Michael Snyder, Stanford a7f00803c7072b5cc8a56f66045c7a8e https://www.encodeproject.org/files/ENCFF132WCZ/@@download/ENCFF132WCZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/d1113bd9-0139-4647-8279-3b1545c1304a/ENCFF132WCZ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF534OEW fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 2 3 76 paired-ended 2 ENCFF927RRE 999796419 Michael Snyder, Stanford 2c19dafc032ea51eb3a3d0f7fd6a2b6c https://www.encodeproject.org/files/ENCFF534OEW/@@download/ENCFF534OEW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/43ccfb25-d2ce-41dd-a552-052824ba560b/ENCFF534OEW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF688WUF fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 2 5 76 paired-ended 2 ENCFF617ALL 645282854 Michael Snyder, Stanford 724105fe5ae8aa83ba1a947609341c7b https://www.encodeproject.org/files/ENCFF688WUF/@@download/ENCFF688WUF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/85f31ad2-17b4-437d-9cd1-663f50a919e7/ENCFF688WUF.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF750HPU fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 2 7 76 paired-ended 1 ENCFF232ZIV 1112365006 Michael Snyder, Stanford 598cb738a2a10a6b026956d6cfe723d8 https://www.encodeproject.org/files/ENCFF750HPU/@@download/ENCFF750HPU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/55e23c35-98eb-41b2-bd51-07227358eb8b/ENCFF750HPU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF193XZE fastq reads ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 2 6 76 paired-ended 2 ENCFF985OET 940560714 Michael Snyder, Stanford 4fd709a81872a411f0c19e6339a8b2bb https://www.encodeproject.org/files/ENCFF193XZE/@@download/ENCFF193XZE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/01/27/42da641d-17e4-4ff9-bab4-4408107c6eaa/ENCFF193XZE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF787DUW bam alignments ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 2 ENCFF132WCZ, ENCFF193XZE, ENCFF232ZIV, ENCFF336ZDA, ENCFF534OEW, ENCFF617ALL, ENCFF642LCD, ENCFF665ASH, ENCFF680VLN, ENCFF688WUF, ENCFF750HPU, ENCFF751BYE, ENCFF927RRE, ENCFF985OET 5765063975 Anshul Kundaje, Stanford 73f8dd86091339bd29208f5b875ada38 https://www.encodeproject.org/files/ENCFF787DUW/@@download/ENCFF787DUW.bam GRCh38 released s3://encode-public/2017/04/01/fd194972-a98d-4da0-bace-78f202266d50/ENCFF787DUW.bam mismatched file status, experiment not submitted to GEO ENCFF912HGK bam alignments ENCSR923WGJ ATAC-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 4 day DNA False 2017-10-10 GGR 1 ENCFF157FMZ, ENCFF334TQS, ENCFF520IRQ, ENCFF546WBL, ENCFF581SDL, ENCFF747LPX, ENCFF858GTH, ENCFF907KNE 5144936943 Anshul Kundaje, Stanford e20350ba8a866a35c9ea8bf281fbc159 https://www.encodeproject.org/files/ENCFF912HGK/@@download/ENCFF912HGK.bam GRCh38 released s3://encode-public/2017/04/01/0500cfbd-9ff5-4205-8d2d-50cf96fa598c/ENCFF912HGK.bam mismatched file status, experiment not submitted to GEO ENCFF391IHY fastq reads ENCSR078EBD ATAC-seq UBERON:0002106 spleen tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF726YQA 4045672609 Michael Snyder, Stanford be31cd4f5d3fb2c4257985cc5de418b7 https://www.encodeproject.org/files/ENCFF391IHY/@@download/ENCFF391IHY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/181b6e85-bca7-4118-a7b0-0f57a4a5b462/ENCFF391IHY.fastq.gz experiment not submitted to GEO ENCFF726YQA fastq reads ENCSR078EBD ATAC-seq UBERON:0002106 spleen tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF391IHY 4191296763 Michael Snyder, Stanford 524ad31b46d18d7b0e41f19255f86193 https://www.encodeproject.org/files/ENCFF726YQA/@@download/ENCFF726YQA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/359b27fd-4e2f-47da-b94d-2994c3aec297/ENCFF726YQA.fastq.gz experiment not submitted to GEO ENCFF294ZCT bam alignments ENCSR078EBD ATAC-seq UBERON:0002106 spleen tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF391IHY, ENCFF726YQA 5427510068 Anshul Kundaje, Stanford 3c3d6b9df827ab0aedc0a6ee83f5e44c https://www.encodeproject.org/files/ENCFF294ZCT/@@download/ENCFF294ZCT.bam GRCh38 released s3://encode-public/2016/12/22/cd2a25da-44d7-485b-9d52-186025188364/ENCFF294ZCT.bam experiment not submitted to GEO ENCFF926ODU bigWig fold change over control ENCSR078EBD ATAC-seq UBERON:0002106 spleen tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF294ZCT 1321690468 Anshul Kundaje, Stanford 3908052694a51dc69af6f4080bdb5edb https://www.encodeproject.org/files/ENCFF926ODU/@@download/ENCFF926ODU.bigWig GRCh38 released s3://encode-public/2016/12/22/fc67fd4c-c6a7-49af-b018-3d81db4c933f/ENCFF926ODU.bigWig experiment not submitted to GEO ENCFF093YSX bigWig signal p-value ENCSR078EBD ATAC-seq UBERON:0002106 spleen tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF294ZCT 1260857354 Anshul Kundaje, Stanford 0f89bd7cb9c2c232f96b74cce67a4a97 https://www.encodeproject.org/files/ENCFF093YSX/@@download/ENCFF093YSX.bigWig GRCh38 released s3://encode-public/2016/12/22/599e2f83-a54d-47d9-abbd-18fbb3119746/ENCFF093YSX.bigWig experiment not submitted to GEO ENCFF076KIT fastq reads ENCSR787YJK ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 2 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 2 1 42 paired-ended 1 ENCFF334LWN 3124834556 Manuel Garber, UMass 30054daa07dbfda662a1788cc60b36b3 SRA:SRR5210438 https://www.encodeproject.org/files/ENCFF076KIT/@@download/ENCFF076KIT.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/65de23d1-1164-42a4-babb-598886c85767/ENCFF076KIT.fastq.gz ENCFF549XBF fastq reads ENCSR787YJK ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 2 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 2 ENCFF066BIR 1625632942 Manuel Garber, UMass a7009a59d896532a07cfcdb0c4b56d74 SRA:SRR5210439 https://www.encodeproject.org/files/ENCFF549XBF/@@download/ENCFF549XBF.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/e329fded-9755-4fea-a718-249443db26eb/ENCFF549XBF.fastq.gz ENCFF066BIR fastq reads ENCSR787YJK ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 2 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 1 ENCFF549XBF 1590756333 Manuel Garber, UMass df07dff3dd50577bca6ea22f33eee28d SRA:SRR5210439 https://www.encodeproject.org/files/ENCFF066BIR/@@download/ENCFF066BIR.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/21cc0e68-0205-49f8-b271-b30d8c3e7920/ENCFF066BIR.fastq.gz ENCFF334LWN fastq reads ENCSR787YJK ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 2 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 2 1 42 paired-ended 2 ENCFF076KIT 3317496037 Manuel Garber, UMass 081913e93a2bc803455be6dda9bfdcf1 SRA:SRR5210438 https://www.encodeproject.org/files/ENCFF334LWN/@@download/ENCFF334LWN.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/80080e31-257d-4dc8-9fae-71935002bb68/ENCFF334LWN.fastq.gz ENCFF562JHD fastq reads ENCSR222SCA ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 4 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 40 paired-ended 1 ENCFF943SYH 3357092451 Manuel Garber, UMass 2f013ebf07e78baff37ad4dc8da2e46a SRA:SRR5210394 https://www.encodeproject.org/files/ENCFF562JHD/@@download/ENCFF562JHD.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/25090150-f731-4e84-9dcd-8fb43053b36f/ENCFF562JHD.fastq.gz unreplicated experiment ENCFF943SYH fastq reads ENCSR222SCA ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Homo sapiens lipopolysaccharide 100 ng/mL 4 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 40 paired-ended 2 ENCFF562JHD 3413604022 Manuel Garber, UMass 1bc3224dd41c08134cee248942c342e8 SRA:SRR5210394 https://www.encodeproject.org/files/ENCFF943SYH/@@download/ENCFF943SYH.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/6740c029-1eb7-4597-ac83-acc81253a4a5/ENCFF943SYH.fastq.gz unreplicated experiment ENCFF890LGM fastq reads ENCSR810HQR ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF048MTG 1247007296 Bing Ren, UCSD e871ef5aabee1cff48125bf352b40009 https://www.encodeproject.org/files/ENCFF890LGM/@@download/ENCFF890LGM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/0ec03d73-f629-4389-ba85-02e4e3869aa3/ENCFF890LGM.fastq.gz experiment not submitted to GEO ENCFF666DRJ fastq reads ENCSR810HQR ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF633MTW 1672784618 Bing Ren, UCSD 8934862e948aa5d4c502d24e9a6bb58d https://www.encodeproject.org/files/ENCFF666DRJ/@@download/ENCFF666DRJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/5db33e65-f1e9-4c45-a191-daae3650b9e9/ENCFF666DRJ.fastq.gz experiment not submitted to GEO ENCFF048MTG fastq reads ENCSR810HQR ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF890LGM 1142765851 Bing Ren, UCSD 90142f6f08071c1b7d130c513320ab68 https://www.encodeproject.org/files/ENCFF048MTG/@@download/ENCFF048MTG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/9b1181fc-6aac-4b70-8619-4faaf83cabfc/ENCFF048MTG.fastq.gz experiment not submitted to GEO ENCFF633MTW fastq reads ENCSR810HQR ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF666DRJ 1543275903 Bing Ren, UCSD 88a9b3d4a58206e2442d3c228de37c84 https://www.encodeproject.org/files/ENCFF633MTW/@@download/ENCFF633MTW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/84616cf0-c490-4d2d-a1ab-92fc5554b16b/ENCFF633MTW.fastq.gz experiment not submitted to GEO ENCFF336VLY bam alignments ENCSR810HQR ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF048MTG, ENCFF890LGM 2497047277 Anshul Kundaje, Stanford a2215aac8a38d807b2c99396169dfcef https://www.encodeproject.org/files/ENCFF336VLY/@@download/ENCFF336VLY.bam mm10 released s3://encode-public/2017/04/25/fc210df1-cda3-4d16-a768-f0cfb7f81c28/ENCFF336VLY.bam experiment not submitted to GEO ENCFF407NCE bam alignments ENCSR810HQR ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF633MTW, ENCFF666DRJ 3323095212 Anshul Kundaje, Stanford 3e96f30665e0f86ce38465becd6da757 https://www.encodeproject.org/files/ENCFF407NCE/@@download/ENCFF407NCE.bam mm10 released s3://encode-public/2017/04/25/fa952774-881e-4b01-bcb8-3f7dd86fadc0/ENCFF407NCE.bam experiment not submitted to GEO ENCFF056TPU bigWig signal p-value ENCSR810HQR ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF336VLY 502972362 Anshul Kundaje, Stanford 38d87edfd0996cc501b5b68657174eda https://www.encodeproject.org/files/ENCFF056TPU/@@download/ENCFF056TPU.bigWig mm10 released s3://encode-public/2017/04/25/f577f37c-df04-4fee-adf9-22718f4f12dd/ENCFF056TPU.bigWig experiment not submitted to GEO ENCFF564MCY bigWig signal p-value ENCSR810HQR ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF407NCE 764011483 Anshul Kundaje, Stanford c4dbd47323d49b87091a53cee0fe84fa https://www.encodeproject.org/files/ENCFF564MCY/@@download/ENCFF564MCY.bigWig mm10 released s3://encode-public/2017/04/25/639cb619-fc3a-4d43-8a24-c10bd469c01c/ENCFF564MCY.bigWig experiment not submitted to GEO ENCFF066SXZ bigWig fold change over control ENCSR810HQR ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF407NCE 757539248 Anshul Kundaje, Stanford 87c7f1f7ba75112de93a771e8fe86568 https://www.encodeproject.org/files/ENCFF066SXZ/@@download/ENCFF066SXZ.bigWig mm10 released s3://encode-public/2017/04/26/cb2e1378-b6d8-46ac-a3b5-e90f253ad18a/ENCFF066SXZ.bigWig experiment not submitted to GEO ENCFF845NRJ bigWig fold change over control ENCSR810HQR ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF336VLY 566844382 Anshul Kundaje, Stanford 6741b35dbc2bf37412c6efb675691726 https://www.encodeproject.org/files/ENCFF845NRJ/@@download/ENCFF845NRJ.bigWig mm10 released s3://encode-public/2017/04/26/c7bcd63e-ede7-4a8a-a938-e9db66691a07/ENCFF845NRJ.bigWig experiment not submitted to GEO ENCFF867QVP fastq reads ENCSR961SMM ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF771QNR 1717547654 Bing Ren, UCSD 5b25e28a69ed225ef726b0c0d112825a https://www.encodeproject.org/files/ENCFF867QVP/@@download/ENCFF867QVP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/824b9d6d-0ace-4b07-bbb3-972349853bb6/ENCFF867QVP.fastq.gz experiment not submitted to GEO ENCFF775MXU fastq reads ENCSR961SMM ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF674OOP 1966494111 Bing Ren, UCSD cb53e95a470041743db371c9adc3fbc1 https://www.encodeproject.org/files/ENCFF775MXU/@@download/ENCFF775MXU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/47eaa66f-8d3b-448e-9072-256a65657e32/ENCFF775MXU.fastq.gz experiment not submitted to GEO ENCFF674OOP fastq reads ENCSR961SMM ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF775MXU 1789629629 Bing Ren, UCSD fcf26738b269483e303f62f3c1e9bf21 https://www.encodeproject.org/files/ENCFF674OOP/@@download/ENCFF674OOP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/369a30c0-3e54-4ddb-9297-f76007ae98e4/ENCFF674OOP.fastq.gz experiment not submitted to GEO ENCFF771QNR fastq reads ENCSR961SMM ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF867QVP 1862652579 Bing Ren, UCSD 1596c28333188a073db44c744b04dcdb https://www.encodeproject.org/files/ENCFF771QNR/@@download/ENCFF771QNR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/abb9d34e-1bde-45b1-ae7c-df66c6bf1442/ENCFF771QNR.fastq.gz experiment not submitted to GEO ENCFF248NDD bam alignments ENCSR961SMM ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF674OOP, ENCFF775MXU 3754553326 Anshul Kundaje, Stanford 04221088cdbb5621c335a7461e72b93b https://www.encodeproject.org/files/ENCFF248NDD/@@download/ENCFF248NDD.bam mm10 released s3://encode-public/2017/04/25/6812ada7-feed-4e25-a23b-1841f0939e52/ENCFF248NDD.bam experiment not submitted to GEO ENCFF262ECE bam alignments ENCSR961SMM ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF771QNR, ENCFF867QVP 3538770143 Anshul Kundaje, Stanford 7fc669ec42a9047a8d37c04c4afc253b https://www.encodeproject.org/files/ENCFF262ECE/@@download/ENCFF262ECE.bam mm10 released s3://encode-public/2017/04/25/e7c29182-6bc7-4a81-8e96-566c6e7d8476/ENCFF262ECE.bam experiment not submitted to GEO ENCFF520ESF bigWig signal p-value ENCSR961SMM ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF248NDD 917460928 Anshul Kundaje, Stanford 67b29788db256dee9316fd95273247c6 https://www.encodeproject.org/files/ENCFF520ESF/@@download/ENCFF520ESF.bigWig mm10 released s3://encode-public/2017/04/25/26c8be42-0043-46a7-a2a3-9551929292d3/ENCFF520ESF.bigWig experiment not submitted to GEO ENCFF441IIO bigWig signal p-value ENCSR961SMM ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF262ECE 652588222 Anshul Kundaje, Stanford d86c2eab1ab2f6ffc35bcd81799c3279 https://www.encodeproject.org/files/ENCFF441IIO/@@download/ENCFF441IIO.bigWig mm10 released s3://encode-public/2017/04/25/9e05df71-8733-46c7-8f7c-7cae84696013/ENCFF441IIO.bigWig experiment not submitted to GEO ENCFF668SEB bigWig fold change over control ENCSR961SMM ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 ENCFF262ECE 881690063 Anshul Kundaje, Stanford 5c8d33424b74c3925e8cad33052a1a72 https://www.encodeproject.org/files/ENCFF668SEB/@@download/ENCFF668SEB.bigWig mm10 released s3://encode-public/2017/04/25/edd072e7-6e3f-4f58-ac38-10645a104e6c/ENCFF668SEB.bigWig experiment not submitted to GEO ENCFF114TFO bigWig fold change over control ENCSR961SMM ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 ENCFF248NDD 923415928 Anshul Kundaje, Stanford 6c19684332aa34a9bb374cf9e96cdd30 https://www.encodeproject.org/files/ENCFF114TFO/@@download/ENCFF114TFO.bigWig mm10 released s3://encode-public/2017/04/25/dfed4741-d205-4fb1-af4e-51bf32b5729c/ENCFF114TFO.bigWig experiment not submitted to GEO ENCFF956PUF fastq reads ENCSR386HAZ ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF958NPR 4718585261 Michael Snyder, Stanford a8efd5b2ffc6356c70f0c266841ac19d https://www.encodeproject.org/files/ENCFF956PUF/@@download/ENCFF956PUF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/ace37f89-f400-4353-bb16-5a364cdf949b/ENCFF956PUF.fastq.gz experiment not submitted to GEO ENCFF958NPR fastq reads ENCSR386HAZ ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF956PUF 4880428278 Michael Snyder, Stanford 1d89d3831ac58061fa52e109f40c9c5b https://www.encodeproject.org/files/ENCFF958NPR/@@download/ENCFF958NPR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2016/04/26/b4deeead-96d2-4060-926c-9179cfc04cdd/ENCFF958NPR.fastq.gz experiment not submitted to GEO ENCFF912PKL bam alignments ENCSR386HAZ ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF956PUF, ENCFF958NPR 5704443122 Anshul Kundaje, Stanford df4f6d0fc893e785f9abd45048be3c46 https://www.encodeproject.org/files/ENCFF912PKL/@@download/ENCFF912PKL.bam GRCh38 released s3://encode-public/2016/12/22/ee865b29-b8ea-448e-95fb-5b93cd162848/ENCFF912PKL.bam experiment not submitted to GEO ENCFF724HKZ bigWig fold change over control ENCSR386HAZ ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF912PKL 1310715512 Anshul Kundaje, Stanford 553519b50733e3fe12f32c1993dc7ed7 https://www.encodeproject.org/files/ENCFF724HKZ/@@download/ENCFF724HKZ.bigWig GRCh38 released s3://encode-public/2016/12/22/186eb082-22e1-4195-a6ad-61a1d9983370/ENCFF724HKZ.bigWig experiment not submitted to GEO ENCFF483QGA bigWig signal p-value ENCSR386HAZ ATAC-seq UBERON:0001157 transverse colon tissue Homo sapiens DNA False 2016-06-15 ENCODE 1 ENCFF912PKL 1069512757 Anshul Kundaje, Stanford dacfe92bf70564583a210f7e994424c9 https://www.encodeproject.org/files/ENCFF483QGA/@@download/ENCFF483QGA.bigWig GRCh38 released s3://encode-public/2016/12/22/90a806fa-3a7c-4182-a01f-ddea5b2e4b1f/ENCFF483QGA.bigWig experiment not submitted to GEO ENCFF820PVO fastq reads ENCSR820ACB ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF279LMU 1444683875 Bing Ren, UCSD c0e9cdd24aec10d7fa142d52f41bf511 https://www.encodeproject.org/files/ENCFF820PVO/@@download/ENCFF820PVO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/075929e1-efb6-46b3-8350-d2b6c15ba319/ENCFF820PVO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF279LMU fastq reads ENCSR820ACB ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF820PVO 1284563812 Bing Ren, UCSD 2870ecd382dc50b8b36b3f9442056826 https://www.encodeproject.org/files/ENCFF279LMU/@@download/ENCFF279LMU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/28d8e8cb-03e8-46c9-b20c-9be93dc707c9/ENCFF279LMU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF823XXU fastq reads ENCSR820ACB ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF518FYP 1147678195 Bing Ren, UCSD 7f5d8174fbad01a42f1932e020026976 https://www.encodeproject.org/files/ENCFF823XXU/@@download/ENCFF823XXU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/48d1c548-4af9-422c-91dc-a12bf140b670/ENCFF823XXU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF518FYP fastq reads ENCSR820ACB ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF823XXU 1271515871 Bing Ren, UCSD 59dacd945fa6dd73cd33ed6569921802 https://www.encodeproject.org/files/ENCFF518FYP/@@download/ENCFF518FYP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/eeefffa4-bc76-4858-8554-faee76a488ee/ENCFF518FYP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF265RFZ fastq reads ENCSR031HDN ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF547OQI 767968071 Bing Ren, UCSD b806ea62e5c15a994fa44c0400b463fd https://www.encodeproject.org/files/ENCFF265RFZ/@@download/ENCFF265RFZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/0fe3bb12-c756-48a6-8533-32c0c072dafb/ENCFF265RFZ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF547OQI fastq reads ENCSR031HDN ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF265RFZ 838589207 Bing Ren, UCSD 83d9ea78d6ddfac0e74b84b9c6316a67 https://www.encodeproject.org/files/ENCFF547OQI/@@download/ENCFF547OQI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/e7440364-b011-4b9d-bcab-ab605f7864f9/ENCFF547OQI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF492KHX fastq reads ENCSR031HDN ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF459CPD 809361049 Bing Ren, UCSD 40640b0f62206c00223d7c6ec59fd97d https://www.encodeproject.org/files/ENCFF492KHX/@@download/ENCFF492KHX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/fc671e5e-af6b-47d9-96fc-afe43455d1f9/ENCFF492KHX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF459CPD fastq reads ENCSR031HDN ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF492KHX 883210122 Bing Ren, UCSD 93835c42b1e59ee19dd33ffb270d4654 https://www.encodeproject.org/files/ENCFF459CPD/@@download/ENCFF459CPD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/240ad443-8401-4b1a-8837-3cc5dff852a7/ENCFF459CPD.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF326MDD fastq reads ENCSR347RZI ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 4 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 1 ENCFF118DWS 872997379 Manuel Garber, UMass 20c0afa17e816bda9363de6a37106c6c SRA:SRR5210395 https://www.encodeproject.org/files/ENCFF326MDD/@@download/ENCFF326MDD.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/f0910f18-9655-4324-b5ed-0826cbe479e4/ENCFF326MDD.fastq.gz ENCFF118DWS fastq reads ENCSR347RZI ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 4 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 2 ENCFF326MDD 890792349 Manuel Garber, UMass db35f08b694d79a2b49a2a501e6bd3a3 SRA:SRR5210395 https://www.encodeproject.org/files/ENCFF118DWS/@@download/ENCFF118DWS.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/4c2dcafb-df7e-4fed-8d19-d01c7c5bc6bf/ENCFF118DWS.fastq.gz ENCFF301CCL fastq reads ENCSR347RZI ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 4 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 2 1 42 paired-ended 2 ENCFF382SNV 3520520677 Manuel Garber, UMass ac0dd5f1174eda0b70f8a46fc5251988 SRA:SRR5210396 https://www.encodeproject.org/files/ENCFF301CCL/@@download/ENCFF301CCL.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/13b62e52-6146-42fa-8ee6-35f1a5b528a8/ENCFF301CCL.fastq.gz ENCFF382SNV fastq reads ENCSR347RZI ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 4 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 2 1 42 paired-ended 1 ENCFF301CCL 3390372888 Manuel Garber, UMass 837d190a1eff28de8aea233f011064e7 SRA:SRR5210396 https://www.encodeproject.org/files/ENCFF382SNV/@@download/ENCFF382SNV.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/a5ae74ee-0049-4c96-a756-763786dce275/ENCFF382SNV.fastq.gz ENCFF881ZDO fastq reads ENCSR939XWM ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 1 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 2 ENCFF747IEL 1837305113 Manuel Garber, UMass 01e2e65967a56aa47c01ba0f071e4940 SRA:SRR5210451 https://www.encodeproject.org/files/ENCFF881ZDO/@@download/ENCFF881ZDO.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/85704197-8216-4140-8ff4-7f4a515a4015/ENCFF881ZDO.fastq.gz ENCFF921LJO fastq reads ENCSR939XWM ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 1 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 2 1 42 paired-ended 1 ENCFF629LUQ 1645511886 Manuel Garber, UMass 054a8cfb783e3b13870f391406d9b3f3 SRA:SRR5210452 https://www.encodeproject.org/files/ENCFF921LJO/@@download/ENCFF921LJO.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/2b238fe8-ad56-4f32-9f2e-802e879f1e51/ENCFF921LJO.fastq.gz ENCFF747IEL fastq reads ENCSR939XWM ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 1 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 1 ENCFF881ZDO 1795948252 Manuel Garber, UMass 9547a078c9de7b1467f6e958d6c32262 SRA:SRR5210451 https://www.encodeproject.org/files/ENCFF747IEL/@@download/ENCFF747IEL.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/ab15e574-8edf-46ae-bdeb-1ff55d29accb/ENCFF747IEL.fastq.gz ENCFF629LUQ fastq reads ENCSR939XWM ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 1 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 2 1 42 paired-ended 2 ENCFF921LJO 1713025501 Manuel Garber, UMass 0ce903d48f640e5b97728ec1f9138537 SRA:SRR5210452 https://www.encodeproject.org/files/ENCFF629LUQ/@@download/ENCFF629LUQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/91bd9b8c-beab-41b3-9232-db4d594146d8/ENCFF629LUQ.fastq.gz