ENCFF997AUJ fastq reads ENCSR486XAS ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF033YBG 853737339 Bing Ren, UCSD 4fb64ceda51d93c333f1f74077ed1347 https://www.encodeproject.org/files/ENCFF997AUJ/@@download/ENCFF997AUJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/face448a-50e6-4e5f-a316-8d2688951244/ENCFF997AUJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF033YBG fastq reads ENCSR486XAS ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF997AUJ 922692444 Bing Ren, UCSD 801cb914aa842f57e1cde551bbae8c8c https://www.encodeproject.org/files/ENCFF033YBG/@@download/ENCFF033YBG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/da052b12-71a2-467c-90e3-1c8b1559e130/ENCFF033YBG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF211VPG fastq reads ENCSR486XAS ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF442KCP 948359474 Bing Ren, UCSD 8e88b5708a00f9a4fdbc4651353576c9 https://www.encodeproject.org/files/ENCFF211VPG/@@download/ENCFF211VPG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/922aa164-d513-4e79-b8b3-a0bcecb48c3b/ENCFF211VPG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF442KCP fastq reads ENCSR486XAS ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF211VPG 1021039739 Bing Ren, UCSD 4357e5164e97786af981ce2eb509a4ff https://www.encodeproject.org/files/ENCFF442KCP/@@download/ENCFF442KCP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/7eae4580-1f04-499f-9f1e-12ea4f6d177c/ENCFF442KCP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF576WIS fastq reads ENCSR758IRM ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF802JNF 1460235248 Bing Ren, UCSD c3d8831a2d341fa7b00f248cbed838d0 https://www.encodeproject.org/files/ENCFF576WIS/@@download/ENCFF576WIS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/cb4e8a7e-dc9e-410a-894e-3196130613eb/ENCFF576WIS.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF958YUR fastq reads ENCSR758IRM ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF504EBV 1139253112 Bing Ren, UCSD 832b1569ed028a1d3ea47c56097761b9 https://www.encodeproject.org/files/ENCFF958YUR/@@download/ENCFF958YUR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/6c5b2a36-825c-441c-b428-1bb5cec0caee/ENCFF958YUR.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF802JNF fastq reads ENCSR758IRM ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF576WIS 1334995707 Bing Ren, UCSD d9f27294157b28394958493051e4a6e2 https://www.encodeproject.org/files/ENCFF802JNF/@@download/ENCFF802JNF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/85bd646b-b17b-439e-ad58-9a6208773a5d/ENCFF802JNF.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF504EBV fastq reads ENCSR758IRM ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF958YUR 1203815883 Bing Ren, UCSD ab247f5de9030612b741ed3d44f254ee https://www.encodeproject.org/files/ENCFF504EBV/@@download/ENCFF504EBV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/40515c74-9e11-462d-802b-34089cfb17b4/ENCFF504EBV.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF360MVK fastq reads ENCSR343TXK ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF443PRW 1436595334 Bing Ren, UCSD 271d482f427b102588fe6e4f14231973 https://www.encodeproject.org/files/ENCFF360MVK/@@download/ENCFF360MVK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/1cdb4135-604c-4248-9f33-611aff897eb1/ENCFF360MVK.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF382CMV fastq reads ENCSR343TXK ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF688ZFD 1865452555 Bing Ren, UCSD c70aa00264263af1745fabed1923bb30 https://www.encodeproject.org/files/ENCFF382CMV/@@download/ENCFF382CMV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/21bac067-ba02-448d-832d-dede11267da0/ENCFF382CMV.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF688ZFD fastq reads ENCSR343TXK ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF382CMV 2051984812 Bing Ren, UCSD 9f7dcc1cdc0d51e8d1418c269594b393 https://www.encodeproject.org/files/ENCFF688ZFD/@@download/ENCFF688ZFD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/c3b01d84-2152-4376-860c-4ccfdadd8653/ENCFF688ZFD.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF443PRW fastq reads ENCSR343TXK ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF360MVK 1563633880 Bing Ren, UCSD 04c95afa2af71fce8b7e7941af7bf6d1 https://www.encodeproject.org/files/ENCFF443PRW/@@download/ENCFF443PRW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/4b2798d1-2919-4c99-8bcb-97db4b2e3e23/ENCFF443PRW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF329VCX fastq reads ENCSR465PYP ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF290ZBP 1518088297 Bing Ren, UCSD f127e113341cad94da10aa70fafbf154 https://www.encodeproject.org/files/ENCFF329VCX/@@download/ENCFF329VCX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/49c57a49-8c40-4c82-9473-7505ad5d153a/ENCFF329VCX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF341HRL fastq reads ENCSR465PYP ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF489XAT 930807280 Bing Ren, UCSD 74a517542018b55959460877a984876e https://www.encodeproject.org/files/ENCFF341HRL/@@download/ENCFF341HRL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/1eb1c043-4a1a-4c6d-8d1a-4b762a0e6b1e/ENCFF341HRL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF290ZBP fastq reads ENCSR465PYP ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF329VCX 1642505616 Bing Ren, UCSD 9e90f0a5164910e98adf02bce30519a7 https://www.encodeproject.org/files/ENCFF290ZBP/@@download/ENCFF290ZBP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/89a7c057-d3ec-44fe-80b5-c208056167f5/ENCFF290ZBP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF489XAT fastq reads ENCSR465PYP ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF341HRL 1015483374 Bing Ren, UCSD e046c0aa398a720c14eaaef21f968c61 https://www.encodeproject.org/files/ENCFF489XAT/@@download/ENCFF489XAT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/094cf05c-daac-414c-a6c7-4e4496de3152/ENCFF489XAT.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF483MKX fastq reads ENCSR451NAE ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF913PMS 1050827748 Bing Ren, UCSD 29c60a8f40898afd7f64f5af5d200509 https://www.encodeproject.org/files/ENCFF483MKX/@@download/ENCFF483MKX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/8c287cbd-1732-41cb-a095-dddd449d3e60/ENCFF483MKX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF999SZR fastq reads ENCSR451NAE ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF655OFT 1354053940 Bing Ren, UCSD ebba303e7c04de1a211dc05769d28fc1 https://www.encodeproject.org/files/ENCFF999SZR/@@download/ENCFF999SZR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/7420cdfa-94d3-49f4-93fd-96cb9cf5a65b/ENCFF999SZR.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF655OFT fastq reads ENCSR451NAE ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF999SZR 1257345869 Bing Ren, UCSD c77f775a08241b1657e2e842236c2bfb https://www.encodeproject.org/files/ENCFF655OFT/@@download/ENCFF655OFT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/711550bb-d5b6-496e-9850-46975f6457d0/ENCFF655OFT.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF913PMS fastq reads ENCSR451NAE ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF483MKX 974821613 Bing Ren, UCSD b35160036a1e30082c008db2da61e75e https://www.encodeproject.org/files/ENCFF913PMS/@@download/ENCFF913PMS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/0762adfa-d2c8-4146-8e08-4af4d1930178/ENCFF913PMS.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF745DEJ fastq reads ENCSR351YUI ATAC-seq CL:0000775 neutrophil primary cell Mus musculus DNA False 2017-11-15 ENCODE 2 1 48 single-ended 2526139577 Ross Hardison, PennState aa2bd095c78b473f7311c847f315d4c5 https://www.encodeproject.org/files/ENCFF745DEJ/@@download/ENCFF745DEJ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/10/06/38214236-be44-41ae-908f-a96e55353131/ENCFF745DEJ.fastq.gz experiment not submitted to GEO ENCFF947IIK fastq reads ENCSR351YUI ATAC-seq CL:0000775 neutrophil primary cell Mus musculus DNA False 2017-11-15 ENCODE 1 1 48 single-ended 2661222219 Ross Hardison, PennState 2a4361ccf714980717b19be9ec35cbb0 https://www.encodeproject.org/files/ENCFF947IIK/@@download/ENCFF947IIK.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/10/06/a921a003-ec69-4dd9-81fa-7013bce4fa1f/ENCFF947IIK.fastq.gz experiment not submitted to GEO ENCFF184PAB fastq reads ENCSR366VBB ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2017-11-15 ENCODE 1 1 48 single-ended 5013995123 Ross Hardison, PennState ae2689d03aad641b6f1131b8b9a75a6e https://www.encodeproject.org/files/ENCFF184PAB/@@download/ENCFF184PAB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2017/10/06/4d4436fb-6eee-4619-b43e-e065b9624f65/ENCFF184PAB.fastq.gz inconsistent platforms experiment not submitted to GEO ENCFF204JEE fastq reads ENCSR366VBB ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2017-11-15 ENCODE 2 1 48 single-ended 2688496712 Ross Hardison, PennState 6d5f1cce51fdf12a37ec172c2ca2ce5a https://www.encodeproject.org/files/ENCFF204JEE/@@download/ENCFF204JEE.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/10/06/21f27d77-a3b0-4478-82dc-19c0bb07db1e/ENCFF204JEE.fastq.gz inconsistent platforms experiment not submitted to GEO ENCFF437GNH fastq reads ENCSR335VJW ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF204EVA 977252055 Bing Ren, UCSD cc8bb020a27f0f54fe126f579d61f4b5 https://www.encodeproject.org/files/ENCFF437GNH/@@download/ENCFF437GNH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/74e0fe81-0876-4e17-ba4e-9ecb6cff0c4c/ENCFF437GNH.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF244BWB fastq reads ENCSR335VJW ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF979DGG 1718632783 Bing Ren, UCSD 1dff1ecb0c20f3f6165653667a50d6ea https://www.encodeproject.org/files/ENCFF244BWB/@@download/ENCFF244BWB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/690aeb14-cb53-4296-9a11-ceef55482072/ENCFF244BWB.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF979DGG fastq reads ENCSR335VJW ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF244BWB 1601558175 Bing Ren, UCSD 74b66f28a17fdad1d500065c41e32ecd https://www.encodeproject.org/files/ENCFF979DGG/@@download/ENCFF979DGG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/9e64cd3a-e32e-4117-8bb8-48edac86b458/ENCFF979DGG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF204EVA fastq reads ENCSR335VJW ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF437GNH 869449517 Bing Ren, UCSD d90156a1eae064bb7eb4862714d75c23 https://www.encodeproject.org/files/ENCFF204EVA/@@download/ENCFF204EVA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/530a958a-8c2f-4412-9f62-979e2cb8ba56/ENCFF204EVA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF579LXC fastq reads ENCSR826JKN ATAC-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus DNA False 2017-03-07 GGR 1 1 50 paired-ended 1 ENCFF107VOW 797336135 Christina Leslie, MSKCC eaf221fb69175cbbfcbbc5cade591d70 https://www.encodeproject.org/files/ENCFF579LXC/@@download/ENCFF579LXC.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/05/d8f94cd0-3d9e-4c3b-87f3-61f719c8ddc4/ENCFF579LXC.fastq.gz experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF832XXN fastq reads ENCSR826JKN ATAC-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus DNA False 2017-03-07 GGR 1 2 50 paired-ended 2 ENCFF743WMF 861886724 Christina Leslie, MSKCC 079c881b0845386267a00eeaa799d7b6 https://www.encodeproject.org/files/ENCFF832XXN/@@download/ENCFF832XXN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/05/066e89b1-bc41-4274-8644-7d57f79545f5/ENCFF832XXN.fastq.gz experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF743WMF fastq reads ENCSR826JKN ATAC-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus DNA False 2017-03-07 GGR 1 2 50 paired-ended 1 ENCFF832XXN 851545061 Christina Leslie, MSKCC c9e48941d22c843062e9594869d0ec9b https://www.encodeproject.org/files/ENCFF743WMF/@@download/ENCFF743WMF.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/05/73ce4762-3d99-4014-928a-ed1fc8837065/ENCFF743WMF.fastq.gz experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF107VOW fastq reads ENCSR826JKN ATAC-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus DNA False 2017-03-07 GGR 1 1 50 paired-ended 2 ENCFF579LXC 814026887 Christina Leslie, MSKCC 0eb3ca10cf27a1688cb17a5c015c33cf https://www.encodeproject.org/files/ENCFF107VOW/@@download/ENCFF107VOW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/05/e8572685-70a4-4d06-b381-59e1ef295dcf/ENCFF107VOW.fastq.gz experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF051GLX fastq reads ENCSR603MWL ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF385WYM 812295858 Bing Ren, UCSD d510757f892880ea826b5d0d0b38a719 https://www.encodeproject.org/files/ENCFF051GLX/@@download/ENCFF051GLX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/105ff587-f4a0-4e03-8546-69939718a72e/ENCFF051GLX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF694SPD fastq reads ENCSR603MWL ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF829XFO 980143589 Bing Ren, UCSD 273467e3e70f9557d4f4f87ace0fe3cb https://www.encodeproject.org/files/ENCFF694SPD/@@download/ENCFF694SPD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/9ac3774a-4b5f-44ef-8a07-0aac57804b32/ENCFF694SPD.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF829XFO fastq reads ENCSR603MWL ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF694SPD 895662375 Bing Ren, UCSD 8fd407df096c602bfe645358f9fd4813 https://www.encodeproject.org/files/ENCFF829XFO/@@download/ENCFF829XFO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/ef5fcc46-2a13-4fb0-9e38-8f06ad8bf089/ENCFF829XFO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF385WYM fastq reads ENCSR603MWL ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF051GLX 741229793 Bing Ren, UCSD 06be8b8c203d8342f6b19a2932d0f598 https://www.encodeproject.org/files/ENCFF385WYM/@@download/ENCFF385WYM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/05be84da-2d49-4709-af2d-85db70c9d49d/ENCFF385WYM.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF507MHY fastq reads ENCSR668EIA ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF217WJG 637570635 Bing Ren, UCSD 529cbf6b8af53112e52ebf1a1f8542c6 https://www.encodeproject.org/files/ENCFF507MHY/@@download/ENCFF507MHY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/7ea5458a-4378-4db0-b9bf-4bec4c8331a6/ENCFF507MHY.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF940GZL fastq reads ENCSR668EIA ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF159YPF 1632916467 Bing Ren, UCSD a99bac1c4d28feb31fcb7cea4d358a4d https://www.encodeproject.org/files/ENCFF940GZL/@@download/ENCFF940GZL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/03abbd9c-f1f6-4b46-8bc9-4d3554556b23/ENCFF940GZL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF217WJG fastq reads ENCSR668EIA ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF507MHY 712676562 Bing Ren, UCSD 86043d83c65d10b13465291601ee737c https://www.encodeproject.org/files/ENCFF217WJG/@@download/ENCFF217WJG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/14ecc1c3-07ae-4f3e-a429-49e12af77eb3/ENCFF217WJG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF159YPF fastq reads ENCSR668EIA ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF940GZL 1471638494 Bing Ren, UCSD 9be2a514c7fcff6b23839059bc9f057b https://www.encodeproject.org/files/ENCFF159YPF/@@download/ENCFF159YPF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/0049f5a6-8ede-4775-8bfc-111259060053/ENCFF159YPF.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF086MTT fastq reads ENCSR652CNN ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF719RSO 1667379072 Bing Ren, UCSD 665b6cf85e16db89eb6b9fc809bdffe6 https://www.encodeproject.org/files/ENCFF086MTT/@@download/ENCFF086MTT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/3b964cdb-49ee-4657-9d20-65bc844374da/ENCFF086MTT.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF982JWB fastq reads ENCSR652CNN ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF377YCK 1641298151 Bing Ren, UCSD 43239c3f45c18ffe63aedcba64d935ec https://www.encodeproject.org/files/ENCFF982JWB/@@download/ENCFF982JWB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/d7571af1-8a4b-4c9d-bab0-edeefdc61b14/ENCFF982JWB.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF719RSO fastq reads ENCSR652CNN ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF086MTT 1494909496 Bing Ren, UCSD a2717bf10e6267680ef25280317b94b0 https://www.encodeproject.org/files/ENCFF719RSO/@@download/ENCFF719RSO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/b5b31a95-8f94-4124-a091-2721dd785e86/ENCFF719RSO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF377YCK fastq reads ENCSR652CNN ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF982JWB 1497329860 Bing Ren, UCSD 36413aefcf144de73c65612f29e14a58 https://www.encodeproject.org/files/ENCFF377YCK/@@download/ENCFF377YCK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/c9a80099-e362-44ff-b7ee-77acfe69c945/ENCFF377YCK.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF642UHQ fastq reads ENCSR150EOO ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF188JXF 1021760562 Bing Ren, UCSD 21494632c1510bc37862762c5f68b8c3 https://www.encodeproject.org/files/ENCFF642UHQ/@@download/ENCFF642UHQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/58305f16-7548-4434-9f6a-601bd7bbecfb/ENCFF642UHQ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF243SQC fastq reads ENCSR150EOO ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF593JRX 1376527955 Bing Ren, UCSD 4d8a961cb9b449b231b3ba71a81e5963 https://www.encodeproject.org/files/ENCFF243SQC/@@download/ENCFF243SQC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/1dc4eca8-fca2-4336-bdd8-0d8e9da02435/ENCFF243SQC.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF593JRX fastq reads ENCSR150EOO ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF243SQC 1268169160 Bing Ren, UCSD 72d4431575be518050b9715d5c271160 https://www.encodeproject.org/files/ENCFF593JRX/@@download/ENCFF593JRX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/31360bab-055a-4efb-9e3c-85d6cda7028a/ENCFF593JRX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF188JXF fastq reads ENCSR150EOO ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF642UHQ 1131688732 Bing Ren, UCSD dc0eaaa4ca804d1f952783d0c074e320 https://www.encodeproject.org/files/ENCFF188JXF/@@download/ENCFF188JXF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/788b4179-9e73-4d78-b7e6-7ee11c83c6f5/ENCFF188JXF.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF994STU fastq reads ENCSR282YTE ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF187AQG 1124170120 Bing Ren, UCSD 7dc1b3faa1796ac9d1e9748802cc5fd1 https://www.encodeproject.org/files/ENCFF994STU/@@download/ENCFF994STU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/5ce7deaf-a6f6-4141-a814-bbb75c16cded/ENCFF994STU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF187AQG fastq reads ENCSR282YTE ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF994STU 962080283 Bing Ren, UCSD 1828b1e3110dfdc4f7fa23c26f1def77 https://www.encodeproject.org/files/ENCFF187AQG/@@download/ENCFF187AQG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/d5eb80ad-a9e8-47cc-872e-21fc68731872/ENCFF187AQG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF149EJI fastq reads ENCSR282YTE ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 51 paired-ended 2 ENCFF529IDC 1918727258 Bing Ren, UCSD e91b8691de5fa4f50fcda123df0e5a45 https://www.encodeproject.org/files/ENCFF149EJI/@@download/ENCFF149EJI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/04/15/980b1b2b-a645-4206-bab5-c559a0bd6dbf/ENCFF149EJI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF529IDC fastq reads ENCSR282YTE ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 51 paired-ended 1 ENCFF149EJI 1678624340 Bing Ren, UCSD ffbeef5e18c77dede0d11ea3a1dfeab4 https://www.encodeproject.org/files/ENCFF529IDC/@@download/ENCFF529IDC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/04/15/6cf40f08-bfae-44ff-b287-b142efd55d9d/ENCFF529IDC.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF444RRA fastq reads ENCSR690VOH ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF226GOU 1481115314 Bing Ren, UCSD 9442ba40f6f124adf5000f802fdbad87 https://www.encodeproject.org/files/ENCFF444RRA/@@download/ENCFF444RRA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/824a5d34-6ff4-4f58-8515-52941634c190/ENCFF444RRA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF927BDD fastq reads ENCSR690VOH ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF303PPN 1307091014 Bing Ren, UCSD 9acd51859e3e0bb4cd4a0b592f89ad69 https://www.encodeproject.org/files/ENCFF927BDD/@@download/ENCFF927BDD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/b685f721-a8b9-41fc-8617-099cf5e29ead/ENCFF927BDD.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF226GOU fastq reads ENCSR690VOH ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF444RRA 1259779262 Bing Ren, UCSD eb207253c5c858c7d75d235181411ced https://www.encodeproject.org/files/ENCFF226GOU/@@download/ENCFF226GOU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/705d5ad8-13b7-4918-9311-e38f63d4762e/ENCFF226GOU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF303PPN fastq reads ENCSR690VOH ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF927BDD 1296667115 Bing Ren, UCSD 122426278f5d63ef6eccf8ecf27a38b1 https://www.encodeproject.org/files/ENCFF303PPN/@@download/ENCFF303PPN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/3cbbdfd6-4f58-4eea-b900-bd887d0e909e/ENCFF303PPN.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF159HYY fastq reads ENCSR032HKE ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF911HQX 1034211550 Bing Ren, UCSD 76ed07187887f86687fa5d0d26737324 https://www.encodeproject.org/files/ENCFF159HYY/@@download/ENCFF159HYY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/ecf8115f-c590-416d-bac4-2b4910d62108/ENCFF159HYY.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF911HQX fastq reads ENCSR032HKE ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF159HYY 1130103383 Bing Ren, UCSD a9b63a5f1034cb4adeb70515a24fcd76 https://www.encodeproject.org/files/ENCFF911HQX/@@download/ENCFF911HQX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/29408927-92af-46e3-bc6e-66f643327743/ENCFF911HQX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF618OJP fastq reads ENCSR032HKE ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF863FZP 2524495609 Bing Ren, UCSD 952a7bdbbc42cbd0872468063afa5c9a https://www.encodeproject.org/files/ENCFF618OJP/@@download/ENCFF618OJP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/bb08c037-6609-4f42-b434-8f33052cf906/ENCFF618OJP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF863FZP fastq reads ENCSR032HKE ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF618OJP 2676571404 Bing Ren, UCSD cedbc5e2ef2c76d5857775fc753102b8 https://www.encodeproject.org/files/ENCFF863FZP/@@download/ENCFF863FZP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/130b5f65-0aa7-412c-96a0-76e0b5932200/ENCFF863FZP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF898FIK fastq reads ENCSR966ORC ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF278MAA 1907062263 Bing Ren, UCSD 7e73e190247769b47af0dc3ba2b32594 https://www.encodeproject.org/files/ENCFF898FIK/@@download/ENCFF898FIK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/7b224327-9da8-4cdb-928e-97f28bc2a772/ENCFF898FIK.fastq.gz experiment not submitted to GEO ENCFF896RTV fastq reads ENCSR966ORC ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF880CTO 1967869931 Bing Ren, UCSD f11d8de1ec7087823e68f413542a2469 https://www.encodeproject.org/files/ENCFF896RTV/@@download/ENCFF896RTV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/c42bf0b1-c309-4ad9-9c1c-76ea7e100e2f/ENCFF896RTV.fastq.gz experiment not submitted to GEO ENCFF278MAA fastq reads ENCSR966ORC ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF898FIK 1751793833 Bing Ren, UCSD 863d3cef7ff894b0f2f7ad3bc8d3e472 https://www.encodeproject.org/files/ENCFF278MAA/@@download/ENCFF278MAA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/eccc74a0-e0e2-4757-bacc-95b2426942ae/ENCFF278MAA.fastq.gz experiment not submitted to GEO ENCFF880CTO fastq reads ENCSR966ORC ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF896RTV 1828121842 Bing Ren, UCSD 7b62dfb30c3eb0fb394cb2674ba7d840 https://www.encodeproject.org/files/ENCFF880CTO/@@download/ENCFF880CTO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/790c4ea7-ef28-4509-a39c-4327cbc4e956/ENCFF880CTO.fastq.gz experiment not submitted to GEO ENCFF788TPW fastq reads ENCSR498DQA ATAC-seq CL:0000556 megakaryocyte primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 48 single-ended 4481171181 Ross Hardison, PennState c01a6bb79e4440575def6bd5039e1466 https://www.encodeproject.org/files/ENCFF788TPW/@@download/ENCFF788TPW.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/b337645b-c349-43a4-ae84-52814da2060f/ENCFF788TPW.fastq.gz inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF943WTV fastq reads ENCSR498DQA ATAC-seq CL:0000556 megakaryocyte primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 48 single-ended 4786142908 Ross Hardison, PennState b0683e3183b92e807f0c55681f4e8828 https://www.encodeproject.org/files/ENCFF943WTV/@@download/ENCFF943WTV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/0883bcc6-8ce8-429f-8747-4733fe660323/ENCFF943WTV.fastq.gz inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF282XJX fastq reads ENCSR498DQA ATAC-seq CL:0000556 megakaryocyte primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 48 single-ended 1214782806 Ross Hardison, PennState 1d10c7e6f5d6664547bd11672ee7039a https://www.encodeproject.org/files/ENCFF282XJX/@@download/ENCFF282XJX.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/27/682d13fa-3aaf-43e2-8827-c18b879a6a3d/ENCFF282XJX.fastq.gz inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF907CZS fastq reads ENCSR597BGP ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF756RRU 2095891385 Bing Ren, UCSD 99af766d5b6ce257ad57f533c3b68028 https://www.encodeproject.org/files/ENCFF907CZS/@@download/ENCFF907CZS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/e42980bd-e6a9-47ad-ac8f-377edd783f4b/ENCFF907CZS.fastq.gz experiment not submitted to GEO ENCFF550FMX fastq reads ENCSR597BGP ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF601QOX 1773891220 Bing Ren, UCSD 784d1970fb129e882a15c5cff1ae7058 https://www.encodeproject.org/files/ENCFF550FMX/@@download/ENCFF550FMX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/5c1e897f-d1de-4cea-bef6-d7a820c97a12/ENCFF550FMX.fastq.gz experiment not submitted to GEO ENCFF756RRU fastq reads ENCSR597BGP ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF907CZS 1991371693 Bing Ren, UCSD 0c6e7a8708e842c64aa26f7c379c176b https://www.encodeproject.org/files/ENCFF756RRU/@@download/ENCFF756RRU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/ba77aedd-e406-41a1-b446-c206358b8b75/ENCFF756RRU.fastq.gz experiment not submitted to GEO ENCFF601QOX fastq reads ENCSR597BGP ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF550FMX 1879605784 Bing Ren, UCSD 6bb9854d66fda361328925b8faaa46d1 https://www.encodeproject.org/files/ENCFF601QOX/@@download/ENCFF601QOX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/50440995-335d-49cf-a233-8404595d01aa/ENCFF601QOX.fastq.gz experiment not submitted to GEO ENCFF119TXW fastq reads ENCSR559FAJ ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF413XTH 1747484951 Bing Ren, UCSD a9696c33f595f3c14a85b53ab578065d https://www.encodeproject.org/files/ENCFF119TXW/@@download/ENCFF119TXW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/073303e4-6503-4aae-884a-cd566eb294b4/ENCFF119TXW.fastq.gz experiment not submitted to GEO ENCFF171APM fastq reads ENCSR559FAJ ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF199UBT 1809427234 Bing Ren, UCSD c4749a88c0fb2fec0f68fb48a4172091 https://www.encodeproject.org/files/ENCFF171APM/@@download/ENCFF171APM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/a4c7210f-6cb0-4e77-8e8f-aad0c8a73127/ENCFF171APM.fastq.gz experiment not submitted to GEO ENCFF413XTH fastq reads ENCSR559FAJ ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF119TXW 1594825555 Bing Ren, UCSD c9f4183fb538a1209c45c08893322e6e https://www.encodeproject.org/files/ENCFF413XTH/@@download/ENCFF413XTH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/9efd1c15-320b-4a6e-b91d-793f11feced7/ENCFF413XTH.fastq.gz experiment not submitted to GEO ENCFF199UBT fastq reads ENCSR559FAJ ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF171APM 1661412334 Bing Ren, UCSD 9d2feb256ccf42c056f9910e02774aac https://www.encodeproject.org/files/ENCFF199UBT/@@download/ENCFF199UBT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/f05feb69-8c66-4b8f-88e7-68d77680963f/ENCFF199UBT.fastq.gz experiment not submitted to GEO ENCFF903OWG fastq reads ENCSR780HBP ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 6 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 2 1 42 paired-ended 1 ENCFF011QJZ 2501457909 Manuel Garber, UMass cc5fd9b6be241e8d8eb037dc2359adf6 SRA:SRR5210442 https://www.encodeproject.org/files/ENCFF903OWG/@@download/ENCFF903OWG.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/254ebe4b-8073-464b-af9a-8bf3875d0d1e/ENCFF903OWG.fastq.gz ENCFF888MFK fastq reads ENCSR780HBP ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 6 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 1 ENCFF317LYL 1620257583 Manuel Garber, UMass 495fc6922bf03ff47132069a15e0a40a SRA:SRR5210443 https://www.encodeproject.org/files/ENCFF888MFK/@@download/ENCFF888MFK.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/7c4b0c39-a288-4bbc-8227-ab623a563206/ENCFF888MFK.fastq.gz ENCFF317LYL fastq reads ENCSR780HBP ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 6 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 2 ENCFF888MFK 1660836887 Manuel Garber, UMass fbb1cdfd5086bf3cbbaa7331ea676e65 SRA:SRR5210443 https://www.encodeproject.org/files/ENCFF317LYL/@@download/ENCFF317LYL.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/b42a35fb-ca9c-4393-9ef5-9c94962722c5/ENCFF317LYL.fastq.gz ENCFF011QJZ fastq reads ENCSR780HBP ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 6 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 2 1 42 paired-ended 2 ENCFF903OWG 2602911362 Manuel Garber, UMass 04416ec406f0be2f9bb8c849b00fc7f5 SRA:SRR5210442 https://www.encodeproject.org/files/ENCFF011QJZ/@@download/ENCFF011QJZ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/536d3d20-7cbb-4405-b55b-c8b606a54159/ENCFF011QJZ.fastq.gz ENCFF440YYI fastq reads ENCSR280ZDP ATAC-seq EFO:0002034 G1E cell line Mus musculus DNA False 2016-03-30 ENCODE 1 1 50 single-ended 1778691625 Ross Hardison, PennState 76da9e075605228474869df25a303186 https://www.encodeproject.org/files/ENCFF440YYI/@@download/ENCFF440YYI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/09/35dd46f9-76e6-4f73-9416-6f3bf004caa9/ENCFF440YYI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF698NQU fastq reads ENCSR280ZDP ATAC-seq EFO:0002034 G1E cell line Mus musculus DNA False 2016-03-30 ENCODE 2 1 50 single-ended 2152261284 Ross Hardison, PennState aefe023e410013d072b561c18bf19fa9 https://www.encodeproject.org/files/ENCFF698NQU/@@download/ENCFF698NQU.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/09/6c650bd2-1eef-415c-bb24-65ac140d7f77/ENCFF698NQU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF583HWE fastq reads ENCSR428BSK ATAC-seq EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA False 2016-03-30 ENCODE 2 1 50 single-ended 1945973349 Ross Hardison, PennState b4bb7b54933d7386a99ce1810db4f199 https://www.encodeproject.org/files/ENCFF583HWE/@@download/ENCFF583HWE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/09/06d4c71a-d160-4059-b112-1320c54cfed2/ENCFF583HWE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF455RDD fastq reads ENCSR428BSK ATAC-seq EFO:0002055 G1E-ER4 cell line Mus musculus 17β-estradiol 10 nM 24 hour DNA False 2016-03-30 ENCODE 1 1 50 single-ended 2013080360 Ross Hardison, PennState 6748fabe4683583ed437f8817e108809 https://www.encodeproject.org/files/ENCFF455RDD/@@download/ENCFF455RDD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/10/09/0af22478-097a-4811-bbe0-e9cf98fba206/ENCFF455RDD.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF395IGM fastq reads ENCSR618HDK ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF395TZD 1161715167 Bing Ren, UCSD 70626f50f6c2d2e8bb0647334c21da53 https://www.encodeproject.org/files/ENCFF395IGM/@@download/ENCFF395IGM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/667c1fae-8e14-41a1-9841-3cdbe55b2fc1/ENCFF395IGM.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF699GSF fastq reads ENCSR618HDK ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF944CWK 780461675 Bing Ren, UCSD 82049da7b9c6474dfd8f720bbc6bf3f7 https://www.encodeproject.org/files/ENCFF699GSF/@@download/ENCFF699GSF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/df2ebf10-1e96-4f95-a24d-f722db0cc564/ENCFF699GSF.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF944CWK fastq reads ENCSR618HDK ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF699GSF 819874966 Bing Ren, UCSD 42820a560d6c2b49fc68773e8ea12cd8 https://www.encodeproject.org/files/ENCFF944CWK/@@download/ENCFF944CWK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/5f63925f-b257-4ac8-96bd-074d368c8801/ENCFF944CWK.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF395TZD fastq reads ENCSR618HDK ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF395IGM 1084809032 Bing Ren, UCSD 11b2da65af16747e9f560de676a53adc https://www.encodeproject.org/files/ENCFF395TZD/@@download/ENCFF395TZD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/2cbbbbbc-01ab-4330-acc0-86a6a06d9bf1/ENCFF395TZD.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF574MEU fastq reads ENCSR819QOJ ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF667HBE 1763774414 Bing Ren, UCSD 43eb01f5eb42e9cd826dd4c2a640013c https://www.encodeproject.org/files/ENCFF574MEU/@@download/ENCFF574MEU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/41527cd9-e119-4e1c-b13a-ae99e59449f3/ENCFF574MEU.fastq.gz experiment not submitted to GEO ENCFF659NJR fastq reads ENCSR819QOJ ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF703JZE 1730761047 Bing Ren, UCSD 345268c4e4547a355af1f5af03b31429 https://www.encodeproject.org/files/ENCFF659NJR/@@download/ENCFF659NJR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/dd466c2a-9e6b-47d8-ab6f-2477f5270ac0/ENCFF659NJR.fastq.gz experiment not submitted to GEO ENCFF703JZE fastq reads ENCSR819QOJ ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF659NJR 1901454713 Bing Ren, UCSD 7f4e7d99b6953b13bbe3662f69999d1e https://www.encodeproject.org/files/ENCFF703JZE/@@download/ENCFF703JZE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/a0d5bd8c-fb46-4d3f-aefe-413c2a969955/ENCFF703JZE.fastq.gz experiment not submitted to GEO ENCFF667HBE fastq reads ENCSR819QOJ ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF574MEU 1614968890 Bing Ren, UCSD 14dc158a1722cde59945d8433036a2f4 https://www.encodeproject.org/files/ENCFF667HBE/@@download/ENCFF667HBE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/2c8d23e5-ceea-44b1-9aee-e29ca9957641/ENCFF667HBE.fastq.gz experiment not submitted to GEO ENCFF535OGL fastq reads ENCSR862JVD ATAC-seq CL:0000576 monocyte primary cell Mus musculus DNA False 2017-11-15 ENCODE 1 1 48 single-ended 2436187498 Ross Hardison, PennState 0268b1c9bb436000a65c5c795e26bc59 https://www.encodeproject.org/files/ENCFF535OGL/@@download/ENCFF535OGL.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/10/06/699c849b-b901-4e5b-839e-fb2210559032/ENCFF535OGL.fastq.gz experiment not submitted to GEO ENCFF432AIW fastq reads ENCSR862JVD ATAC-seq CL:0000576 monocyte primary cell Mus musculus DNA False 2017-11-15 ENCODE 2 1 48 single-ended 2757627600 Ross Hardison, PennState 3035a1728ccb64e8f6bbeec23a727add https://www.encodeproject.org/files/ENCFF432AIW/@@download/ENCFF432AIW.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/10/06/8f17a424-48be-46ba-b55e-56245c131bf4/ENCFF432AIW.fastq.gz experiment not submitted to GEO ENCFF243ROW fastq reads ENCSR255XTC ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF702NAP 1273125834 Bing Ren, UCSD 4e62606c38f1db9590741a2828fc316e https://www.encodeproject.org/files/ENCFF243ROW/@@download/ENCFF243ROW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/056dbf29-ea5b-498d-aaab-ec839f1fcb51/ENCFF243ROW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF702NAP fastq reads ENCSR255XTC ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF243ROW 1150357183 Bing Ren, UCSD 9d81b42b0d41fd7f2f7be0aa90f707b2 https://www.encodeproject.org/files/ENCFF702NAP/@@download/ENCFF702NAP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/d82f2b25-b4b4-4baf-bd8a-6bc205bc7c71/ENCFF702NAP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF894ZND fastq reads ENCSR255XTC ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF788EQO 1026189189 Bing Ren, UCSD 3021ae28f7a0cb603bc4fd5875b15021 https://www.encodeproject.org/files/ENCFF894ZND/@@download/ENCFF894ZND.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/4e41561a-f069-46a2-a777-f6683f1a1bf7/ENCFF894ZND.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF788EQO fastq reads ENCSR255XTC ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF894ZND 1076998827 Bing Ren, UCSD 5f21e93458e48e5f3a70d4238adfdb12 https://www.encodeproject.org/files/ENCFF788EQO/@@download/ENCFF788EQO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/df04ae07-05ad-41cf-861f-f24c0a34baa0/ENCFF788EQO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF987EVS fastq reads ENCSR302LIV ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF772GVP 1592040092 Bing Ren, UCSD 18656cfaa209e8f28e85f569bdd28ca3 https://www.encodeproject.org/files/ENCFF987EVS/@@download/ENCFF987EVS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/e8581401-e699-469d-945d-d3dd9fa60488/ENCFF987EVS.fastq.gz experiment not submitted to GEO ENCFF409BPW fastq reads ENCSR302LIV ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF016UWL 2048695563 Bing Ren, UCSD 7865408462373e63961bac8685b4febc https://www.encodeproject.org/files/ENCFF409BPW/@@download/ENCFF409BPW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/3f6ef0b6-9515-488c-8e97-75ce058902a8/ENCFF409BPW.fastq.gz experiment not submitted to GEO ENCFF016UWL fastq reads ENCSR302LIV ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF409BPW 2247231335 Bing Ren, UCSD 917681cb5d13bdeb3c4970808dae3a1a https://www.encodeproject.org/files/ENCFF016UWL/@@download/ENCFF016UWL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/849052e5-6ea3-4a84-9b96-27f7d1b113d0/ENCFF016UWL.fastq.gz experiment not submitted to GEO ENCFF772GVP fastq reads ENCSR302LIV ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF987EVS 1778991610 Bing Ren, UCSD bb0c7275394f5e81081b68050f4c5fa9 https://www.encodeproject.org/files/ENCFF772GVP/@@download/ENCFF772GVP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/db11896a-863b-44cb-8e9b-f6fe8d231605/ENCFF772GVP.fastq.gz experiment not submitted to GEO ENCFF104GCO fastq reads ENCSR358MOW ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF737HFT 981842974 Bing Ren, UCSD 810fb19350b0f678df94b8f85a74c6b5 https://www.encodeproject.org/files/ENCFF104GCO/@@download/ENCFF104GCO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/dd3b343f-0009-4c07-ba42-109d47f86bef/ENCFF104GCO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF166ANK fastq reads ENCSR358MOW ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF512CMK 879187424 Bing Ren, UCSD 61758ce8f446b769896d280ee288c940 https://www.encodeproject.org/files/ENCFF166ANK/@@download/ENCFF166ANK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/1b4c219b-ba04-4986-931a-474c765168f3/ENCFF166ANK.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF512CMK fastq reads ENCSR358MOW ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF166ANK 961745053 Bing Ren, UCSD f5ea9e23ed436e28115d1100731043ea https://www.encodeproject.org/files/ENCFF512CMK/@@download/ENCFF512CMK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/25314edb-fa8c-490d-b522-51ed1f4b7f1b/ENCFF512CMK.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF737HFT fastq reads ENCSR358MOW ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF104GCO 1066900566 Bing Ren, UCSD 963b3ee317fda67e9588de2eb46bf425 https://www.encodeproject.org/files/ENCFF737HFT/@@download/ENCFF737HFT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/8d80766d-e78e-4a2f-b64d-d2b1b15af4ec/ENCFF737HFT.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF724ZGT fastq reads ENCSR261ICG ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF312YEC 1245699255 Bing Ren, UCSD e099b65384549f878b80778d683c66f4 https://www.encodeproject.org/files/ENCFF724ZGT/@@download/ENCFF724ZGT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/6df66cd5-98d0-457c-ba05-a158da78bac0/ENCFF724ZGT.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF322LEO fastq reads ENCSR261ICG ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF139WZE 966470435 Bing Ren, UCSD 9e14c4d62631aa836310b9008fc525e1 https://www.encodeproject.org/files/ENCFF322LEO/@@download/ENCFF322LEO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/a89147a1-7fcc-4ec7-9153-0f17b6a4291a/ENCFF322LEO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF312YEC fastq reads ENCSR261ICG ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF724ZGT 1345336515 Bing Ren, UCSD fa9b97752c5f831db063bdb03b0ecf0d https://www.encodeproject.org/files/ENCFF312YEC/@@download/ENCFF312YEC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/5b68adac-4220-4d77-b72f-b259a9903cec/ENCFF312YEC.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF139WZE fastq reads ENCSR261ICG ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF322LEO 925331637 Bing Ren, UCSD 2d73c93bf39a45a71a408ffb397e2281 https://www.encodeproject.org/files/ENCFF139WZE/@@download/ENCFF139WZE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/29cf294b-7a0e-49d1-a9bc-b78f1ef6ade2/ENCFF139WZE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF224TAO fastq reads ENCSR627OCR ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF577XAL 2085345251 Bing Ren, UCSD dcfe4837a70deedfd6800133f8f0cb0b https://www.encodeproject.org/files/ENCFF224TAO/@@download/ENCFF224TAO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/6a77ac80-6b21-4df6-ae56-fc314e17dbba/ENCFF224TAO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF872IZI fastq reads ENCSR627OCR ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF427HTC 1010989475 Bing Ren, UCSD 0761bf9e93a77af8f4fc4417bfa84b0e https://www.encodeproject.org/files/ENCFF872IZI/@@download/ENCFF872IZI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/626c564e-8f4b-443f-a437-cd05315cef94/ENCFF872IZI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF577XAL fastq reads ENCSR627OCR ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF224TAO 1878916604 Bing Ren, UCSD bcde319ebddcca40ba974ca816aeb6bb https://www.encodeproject.org/files/ENCFF577XAL/@@download/ENCFF577XAL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/55fd0e9f-8e06-4c6d-9753-e25093ab099f/ENCFF577XAL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF427HTC fastq reads ENCSR627OCR ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF872IZI 1122479011 Bing Ren, UCSD 43b41397bf13f38b09ba0dc6aa3ee7c8 https://www.encodeproject.org/files/ENCFF427HTC/@@download/ENCFF427HTC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/7720b75c-208e-4a34-8bec-043faea42d58/ENCFF427HTC.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF788XEN fastq reads ENCSR116SPR ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 30 minute DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 1 ENCFF107KTU 1048018488 Manuel Garber, UMass 06c7a711a38ddac5b2ef9e3f5df2aa17 SRA:SRR5210380 https://www.encodeproject.org/files/ENCFF788XEN/@@download/ENCFF788XEN.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/c912e44f-b2d6-4f7b-810e-082e56927473/ENCFF788XEN.fastq.gz ENCFF107KTU fastq reads ENCSR116SPR ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 30 minute DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 2 ENCFF788XEN 1068774052 Manuel Garber, UMass 174335ed0960762e712774a977bf418e SRA:SRR5210380 https://www.encodeproject.org/files/ENCFF107KTU/@@download/ENCFF107KTU.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/d6336268-6764-4263-9570-a4b11033db60/ENCFF107KTU.fastq.gz ENCFF275ONY fastq reads ENCSR116SPR ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 30 minute DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 2 1 42 paired-ended 1 ENCFF523EGM 1745175453 Manuel Garber, UMass 38a0c62f9150a74450bbe218d449c195 SRA:SRR5210381 https://www.encodeproject.org/files/ENCFF275ONY/@@download/ENCFF275ONY.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/01b27053-3235-4034-a5e8-795212068132/ENCFF275ONY.fastq.gz ENCFF523EGM fastq reads ENCSR116SPR ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 30 minute DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 2 1 42 paired-ended 2 ENCFF275ONY 1829514806 Manuel Garber, UMass bdd320bee6eaf29818a7931ba1ca818e SRA:SRR5210381 https://www.encodeproject.org/files/ENCFF523EGM/@@download/ENCFF523EGM.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/36b59d4c-e954-4dcd-b576-aa0ba587b5c1/ENCFF523EGM.fastq.gz ENCFF258GFE fastq reads ENCSR068YGC ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF826YDW 869889383 Bing Ren, UCSD 47e5e6fef8a850611c052588774749e6 https://www.encodeproject.org/files/ENCFF258GFE/@@download/ENCFF258GFE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/7147b5d1-c0e0-40c9-abfd-be1e265fdad7/ENCFF258GFE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF753WMG fastq reads ENCSR068YGC ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF031SEH 975912286 Bing Ren, UCSD 87f27ba91f24cd01a835184bfc40aa13 https://www.encodeproject.org/files/ENCFF753WMG/@@download/ENCFF753WMG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/fcc51183-3e53-43de-baf6-1f44c150ed50/ENCFF753WMG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF826YDW fastq reads ENCSR068YGC ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF258GFE 793167103 Bing Ren, UCSD fc0eac84acbac77dc1b5256381e61de9 https://www.encodeproject.org/files/ENCFF826YDW/@@download/ENCFF826YDW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/e5136da2-7607-4163-8823-8f062029726a/ENCFF826YDW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF031SEH fastq reads ENCSR068YGC ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF753WMG 1069351913 Bing Ren, UCSD 599082d63efa3f4b5085555017fcf766 https://www.encodeproject.org/files/ENCFF031SEH/@@download/ENCFF031SEH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/f32a0d2f-3a2d-4342-bcd6-8f95289dabaf/ENCFF031SEH.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF769SYG fastq reads ENCSR384JBF ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF948TDP 1677901727 Bing Ren, UCSD d685fd84cf42007ba64e095a22411727 https://www.encodeproject.org/files/ENCFF769SYG/@@download/ENCFF769SYG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/496370cc-0588-4301-84a7-2d2ed2193ace/ENCFF769SYG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF227ATX fastq reads ENCSR384JBF ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF307UMX 1551766807 Bing Ren, UCSD cde5b708451d7659960aad45d4acbc9e https://www.encodeproject.org/files/ENCFF227ATX/@@download/ENCFF227ATX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/5ee4b9ab-ca2a-4b49-a53d-214d834a1558/ENCFF227ATX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF948TDP fastq reads ENCSR384JBF ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF769SYG 1870924542 Bing Ren, UCSD 4454da9f7a5a7230b0e78921718efc6c https://www.encodeproject.org/files/ENCFF948TDP/@@download/ENCFF948TDP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/ab6b4484-6de1-43ab-a0e9-76b0f48731a2/ENCFF948TDP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF307UMX fastq reads ENCSR384JBF ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF227ATX 1713378956 Bing Ren, UCSD 812466c70ffc704f3eba554b09931cab https://www.encodeproject.org/files/ENCFF307UMX/@@download/ENCFF307UMX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/bbd1e4e2-8311-4fd6-90ae-45547e499fe7/ENCFF307UMX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF545MGJ fastq reads ENCSR363SKQ ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF310DVL 1479473079 Bing Ren, UCSD b785dbdf83b3c9e46e3e9f74317bab75 https://www.encodeproject.org/files/ENCFF545MGJ/@@download/ENCFF545MGJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/ec81d68d-8dd2-4cb6-9f38-513b57dff889/ENCFF545MGJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF528WNO fastq reads ENCSR363SKQ ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF836EJZ 759794304 Bing Ren, UCSD 6256e282e7e94c0e17efcf2846762aec https://www.encodeproject.org/files/ENCFF528WNO/@@download/ENCFF528WNO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/cfabde46-d583-4d35-8da2-4c755c2b324a/ENCFF528WNO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF310DVL fastq reads ENCSR363SKQ ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF545MGJ 1372919250 Bing Ren, UCSD f0167c60941e3eff83f1526d48224767 https://www.encodeproject.org/files/ENCFF310DVL/@@download/ENCFF310DVL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/5aace67e-5df9-48ea-ba78-becfe5232caf/ENCFF310DVL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF836EJZ fastq reads ENCSR363SKQ ATAC-seq UBERON:0000945 stomach tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF528WNO 711541489 Bing Ren, UCSD 0a332901dba5261a19411419aa5c9d35 https://www.encodeproject.org/files/ENCFF836EJZ/@@download/ENCFF836EJZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/dabe1b56-f426-426a-9223-f4a2759bd1d5/ENCFF836EJZ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF463PIR fastq reads ENCSR064IHX ATAC-seq CL:0000050 megakaryocyte-erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 48 single-ended 4758872907 Ross Hardison, PennState 8f50f4c5e8d9ef1481ac3b4cffe3847e https://www.encodeproject.org/files/ENCFF463PIR/@@download/ENCFF463PIR.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/d300277b-8f48-4fba-bcbe-7f75d6fcc823/ENCFF463PIR.fastq.gz inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF360YBL fastq reads ENCSR064IHX ATAC-seq CL:0000050 megakaryocyte-erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 48 single-ended 4716086216 Ross Hardison, PennState 681b3653b86801927b0afb6747ff7c40 https://www.encodeproject.org/files/ENCFF360YBL/@@download/ENCFF360YBL.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/13c71f85-d9eb-4839-9916-7e6ac1253798/ENCFF360YBL.fastq.gz inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF593JVB fastq reads ENCSR064IHX ATAC-seq CL:0000050 megakaryocyte-erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 48 single-ended 587116969 Ross Hardison, PennState bec323b026903a29739f45b0c15d5c76 https://www.encodeproject.org/files/ENCFF593JVB/@@download/ENCFF593JVB.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/27/538919d9-8b53-4d2d-9f23-25fe4adbb02d/ENCFF593JVB.fastq.gz inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF757AOM fastq reads ENCSR914PYX ATAC-seq CL:0000049 common myeloid progenitor primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 48 single-ended 3498895980 Ross Hardison, PennState 8e29648fda16d1020e766225f1740c2b https://www.encodeproject.org/files/ENCFF757AOM/@@download/ENCFF757AOM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/9b076e06-a661-4da4-b518-8c216df996c9/ENCFF757AOM.fastq.gz inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF692NRE fastq reads ENCSR914PYX ATAC-seq CL:0000049 common myeloid progenitor primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 48 single-ended 3840666325 Ross Hardison, PennState f2e29c4417f620042fc5f1d6e6f6edd7 https://www.encodeproject.org/files/ENCFF692NRE/@@download/ENCFF692NRE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/1faeef0b-c739-47ef-9a91-cd73a17e1a1e/ENCFF692NRE.fastq.gz inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF731TRW fastq reads ENCSR914PYX ATAC-seq CL:0000049 common myeloid progenitor primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 48 single-ended 1942375776 Ross Hardison, PennState f83f82295400f2a4b05954850a952e2e https://www.encodeproject.org/files/ENCFF731TRW/@@download/ENCFF731TRW.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/27/78f956a4-be1b-4954-b8b0-68b5d372edf4/ENCFF731TRW.fastq.gz inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF217JOA fastq reads ENCSR453AWR ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 48 single-ended 3235500981 Ross Hardison, PennState aaa76a4bce603a69821c86b796201c27 https://www.encodeproject.org/files/ENCFF217JOA/@@download/ENCFF217JOA.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/8cd8c01d-1cec-4e18-b4ad-9256eb393d50/ENCFF217JOA.fastq.gz inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF621CAV fastq reads ENCSR453AWR ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 48 single-ended 3861474192 Ross Hardison, PennState 061cceb2747d349c7fb43425a7f59350 https://www.encodeproject.org/files/ENCFF621CAV/@@download/ENCFF621CAV.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/db068433-6770-42b7-b6ba-a5238dc59cfa/ENCFF621CAV.fastq.gz inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF125NOO fastq reads ENCSR453AWR ATAC-seq CL:0000037 hematopoietic stem cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 48 single-ended 5275708591 Ross Hardison, PennState 91c11f11d9e316850c3611e5bbf863ef https://www.encodeproject.org/files/ENCFF125NOO/@@download/ENCFF125NOO.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/27/12c5b560-fb88-4186-9d1b-b9433ea78b91/ENCFF125NOO.fastq.gz inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF395EDU fastq reads ENCSR023QZX ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF100YMT 1549863236 Bing Ren, UCSD 8cf7e2c78fe47cd873243577fb72a216 https://www.encodeproject.org/files/ENCFF395EDU/@@download/ENCFF395EDU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/53d392d1-637b-441f-ae30-b2b92a724008/ENCFF395EDU.fastq.gz experiment not submitted to GEO ENCFF117TPW fastq reads ENCSR023QZX ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF340WOK 1471210006 Bing Ren, UCSD e29dd5c16efcc85fafb80a9c7b64fc57 https://www.encodeproject.org/files/ENCFF117TPW/@@download/ENCFF117TPW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/3e69b335-96aa-4b33-bced-963f7545c9b1/ENCFF117TPW.fastq.gz experiment not submitted to GEO ENCFF100YMT fastq reads ENCSR023QZX ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF395EDU 1705555673 Bing Ren, UCSD 1a8859926ee8adbdb5e01e6dccdc9d3f https://www.encodeproject.org/files/ENCFF100YMT/@@download/ENCFF100YMT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/f9e4a538-fa97-40dd-b941-59fe39d9a87a/ENCFF100YMT.fastq.gz experiment not submitted to GEO ENCFF340WOK fastq reads ENCSR023QZX ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF117TPW 1323312045 Bing Ren, UCSD 1b1d00fe10560694e1c45d47b1339d03 https://www.encodeproject.org/files/ENCFF340WOK/@@download/ENCFF340WOK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/9b94c90e-e213-4941-b637-e22f0b2029c0/ENCFF340WOK.fastq.gz experiment not submitted to GEO ENCFF185IWQ fastq reads ENCSR876SYO ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF050LTK 992777996 Bing Ren, UCSD 347dc464dd5e32e7559cc8f89477b2fe https://www.encodeproject.org/files/ENCFF185IWQ/@@download/ENCFF185IWQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/1885482d-e0ff-42e7-92b5-07bf0a475e35/ENCFF185IWQ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF043JPE fastq reads ENCSR876SYO ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF369BHN 1153243808 Bing Ren, UCSD 8c31260d27c4f8ab05aab78c624a8c5a https://www.encodeproject.org/files/ENCFF043JPE/@@download/ENCFF043JPE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/c4851c41-a518-48a1-9a05-c07103036df3/ENCFF043JPE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF050LTK fastq reads ENCSR876SYO ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF185IWQ 1073989044 Bing Ren, UCSD f80dc47ef546d16066b7d61087281532 https://www.encodeproject.org/files/ENCFF050LTK/@@download/ENCFF050LTK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/bc2daa28-99a2-4f35-b05a-d62261828c82/ENCFF050LTK.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF369BHN fastq reads ENCSR876SYO ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF043JPE 1060264800 Bing Ren, UCSD c85d7d7642df4eb6f5942a0f47fb4727 https://www.encodeproject.org/files/ENCFF369BHN/@@download/ENCFF369BHN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/a4e5301a-3b30-436b-9ca2-cb93ab92bc1b/ENCFF369BHN.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF518FPU fastq reads ENCSR096JCC ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF754FRO 1213124079 Bing Ren, UCSD ce31e6b5f66f497e645ba06405f371ab https://www.encodeproject.org/files/ENCFF518FPU/@@download/ENCFF518FPU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/98cfcc52-6b3e-4be3-8fe0-caeb1351a40b/ENCFF518FPU.fastq.gz experiment not submitted to GEO ENCFF754FRO fastq reads ENCSR096JCC ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF518FPU 1339861524 Bing Ren, UCSD 917952f02687ba652ab47005e2b21d5d https://www.encodeproject.org/files/ENCFF754FRO/@@download/ENCFF754FRO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/55b389c5-670f-49a9-ab55-9cc4efb95e3b/ENCFF754FRO.fastq.gz experiment not submitted to GEO ENCFF458XRA fastq reads ENCSR096JCC ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF882GWB 1677474959 Bing Ren, UCSD 35060897086862a6b968d3ee7e8fc1e3 https://www.encodeproject.org/files/ENCFF458XRA/@@download/ENCFF458XRA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/9ced17ab-f4b1-404f-b916-bfab02cac70e/ENCFF458XRA.fastq.gz experiment not submitted to GEO ENCFF882GWB fastq reads ENCSR096JCC ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF458XRA 1844272986 Bing Ren, UCSD e370517a5b89d4aee60b358103e53234 https://www.encodeproject.org/files/ENCFF882GWB/@@download/ENCFF882GWB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/04c8bc37-4f34-4825-955f-cedb0dba4ced/ENCFF882GWB.fastq.gz experiment not submitted to GEO ENCFF747ZCB fastq reads ENCSR382RUC ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF236CXJ 2293808068 Bing Ren, UCSD 338fbbd3c77cb4856f7c4546bbcd829b https://www.encodeproject.org/files/ENCFF747ZCB/@@download/ENCFF747ZCB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/cc1ddb92-986f-4dec-b1ad-a9e80b38e1ac/ENCFF747ZCB.fastq.gz experiment not submitted to GEO ENCFF315TMY fastq reads ENCSR382RUC ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF752YLN 1657350732 Bing Ren, UCSD c8b01481196dfdc0bf44df6cfa1b7fc9 https://www.encodeproject.org/files/ENCFF315TMY/@@download/ENCFF315TMY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/9861895e-8199-4b7a-8c3d-1a6ad52f30d8/ENCFF315TMY.fastq.gz experiment not submitted to GEO ENCFF752YLN fastq reads ENCSR382RUC ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF315TMY 1799992844 Bing Ren, UCSD f6903d36357f4d81ffa8418adc2ec372 https://www.encodeproject.org/files/ENCFF752YLN/@@download/ENCFF752YLN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/185900c8-481d-4737-b7ee-88b049561c74/ENCFF752YLN.fastq.gz experiment not submitted to GEO ENCFF236CXJ fastq reads ENCSR382RUC ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF747ZCB 2482353972 Bing Ren, UCSD 4dc7b79a9015079d2c4cf096a36cbc67 https://www.encodeproject.org/files/ENCFF236CXJ/@@download/ENCFF236CXJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/a83166bd-22b3-48b6-bf2a-bbd5279c2329/ENCFF236CXJ.fastq.gz experiment not submitted to GEO ENCFF388RQI fastq reads ENCSR724UJS ATAC-seq CL:0000815 regulatory T cell primary cell Mus musculus DNA False 2017-03-07 GGR 1 2 50 paired-ended 2 ENCFF047KQJ 1941621594 Christina Leslie, MSKCC 5d195edb01388fb39d8d51b688e9ced6 https://www.encodeproject.org/files/ENCFF388RQI/@@download/ENCFF388RQI.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/05/b970576b-c3d6-4b9e-b9d9-b983f85533e9/ENCFF388RQI.fastq.gz experiment not submitted to GEO, missing donor unreplicated experiment ENCFF047KQJ fastq reads ENCSR724UJS ATAC-seq CL:0000815 regulatory T cell primary cell Mus musculus DNA False 2017-03-07 GGR 1 2 50 paired-ended 1 ENCFF388RQI 1914287496 Christina Leslie, MSKCC fc63e58e3da0804cd9b059203868252c https://www.encodeproject.org/files/ENCFF047KQJ/@@download/ENCFF047KQJ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/05/d100de1f-1eb9-4b8c-bf57-c2f8499a538d/ENCFF047KQJ.fastq.gz experiment not submitted to GEO, missing donor unreplicated experiment ENCFF175VOD fastq reads ENCSR724UJS ATAC-seq CL:0000815 regulatory T cell primary cell Mus musculus DNA False 2017-03-07 GGR 1 1 50 paired-ended 1 ENCFF447BGX 809414402 Christina Leslie, MSKCC 73696a097286917fd29d36838cb07f75 https://www.encodeproject.org/files/ENCFF175VOD/@@download/ENCFF175VOD.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/05/2aa465ec-d479-4bae-b8d4-1750de8fd695/ENCFF175VOD.fastq.gz experiment not submitted to GEO, missing donor unreplicated experiment ENCFF447BGX fastq reads ENCSR724UJS ATAC-seq CL:0000815 regulatory T cell primary cell Mus musculus DNA False 2017-03-07 GGR 1 1 50 paired-ended 2 ENCFF175VOD 822029347 Christina Leslie, MSKCC e8848a826c6ba69e91e096dfe9f3066b https://www.encodeproject.org/files/ENCFF447BGX/@@download/ENCFF447BGX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/05/3959ebc1-449a-442f-8a3c-8ff1701a1825/ENCFF447BGX.fastq.gz experiment not submitted to GEO, missing donor unreplicated experiment ENCFF176IZG fastq reads ENCSR609OHJ ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF599TJR 2417817118 Bing Ren, UCSD 24eebed0eb2cb031d05d0d67f373ac02 https://www.encodeproject.org/files/ENCFF176IZG/@@download/ENCFF176IZG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/436d9167-7b99-45bd-95d9-ba83a788f7e4/ENCFF176IZG.fastq.gz experiment not submitted to GEO ENCFF957VLH fastq reads ENCSR609OHJ ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF999IJT 1748269555 Bing Ren, UCSD d375e5eea521e0638c727d3e3a4b3b21 https://www.encodeproject.org/files/ENCFF957VLH/@@download/ENCFF957VLH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/d939e0b1-0d49-4703-8b44-4ddcfa888bad/ENCFF957VLH.fastq.gz experiment not submitted to GEO ENCFF999IJT fastq reads ENCSR609OHJ ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF957VLH 1880796060 Bing Ren, UCSD d48829b89549efaf9d55477d4a3420c2 https://www.encodeproject.org/files/ENCFF999IJT/@@download/ENCFF999IJT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/eaeeaac1-dfb5-4a10-ae3c-f3537d82a02d/ENCFF999IJT.fastq.gz experiment not submitted to GEO ENCFF599TJR fastq reads ENCSR609OHJ ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF176IZG 2282679080 Bing Ren, UCSD be3288a9e40c30a086c2b72a7cecdb9e https://www.encodeproject.org/files/ENCFF599TJR/@@download/ENCFF599TJR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/4ac0b021-7dd9-4c52-b9ac-fbfd4bebf139/ENCFF599TJR.fastq.gz experiment not submitted to GEO ENCFF844GGH fastq reads ENCSR984HFU ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 0 ng/mL 0 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 1 ENCFF202BGK 1653203083 Manuel Garber, UMass 021e03cde5702497664425ede33f0302 SRA:SRR5210456 https://www.encodeproject.org/files/ENCFF844GGH/@@download/ENCFF844GGH.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/8d11a769-4676-450a-a497-868d8116080a/ENCFF844GGH.fastq.gz ENCFF588NME fastq reads ENCSR984HFU ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 0 ng/mL 0 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 2 1 42 paired-ended 1 ENCFF004ISY 1453983843 Manuel Garber, UMass 47677c98a01c75a0fa2ab07add9e80f9 SRA:SRR5210457 https://www.encodeproject.org/files/ENCFF588NME/@@download/ENCFF588NME.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/d89da0d5-156c-4b9b-bd9e-bc798860c09f/ENCFF588NME.fastq.gz ENCFF202BGK fastq reads ENCSR984HFU ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 0 ng/mL 0 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 2 ENCFF844GGH 1686402129 Manuel Garber, UMass a712f3c5db2446ac08925a20745556eb SRA:SRR5210456 https://www.encodeproject.org/files/ENCFF202BGK/@@download/ENCFF202BGK.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/e2f126e9-4eb3-4916-af08-59f5614d1d51/ENCFF202BGK.fastq.gz ENCFF004ISY fastq reads ENCSR984HFU ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 0 ng/mL 0 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 2 1 42 paired-ended 2 ENCFF588NME 1534281105 Manuel Garber, UMass 19a6039c0dc5303714e642deddf5037b SRA:SRR5210457 https://www.encodeproject.org/files/ENCFF004ISY/@@download/ENCFF004ISY.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/97466934-d49f-427a-9199-7fcf16208744/ENCFF004ISY.fastq.gz ENCFF753PKM fastq reads ENCSR012YAB ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF635ZQL 1558575722 Bing Ren, UCSD f9074d43fd9af86cb57d0c8c16d7eee0 https://www.encodeproject.org/files/ENCFF753PKM/@@download/ENCFF753PKM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/831579a8-682b-49c6-8b31-d6f38743cd02/ENCFF753PKM.fastq.gz experiment not submitted to GEO ENCFF058UWO fastq reads ENCSR012YAB ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF163UHB 2725524873 Bing Ren, UCSD ff81dff07b1e705e8594a47b3f5720fa https://www.encodeproject.org/files/ENCFF058UWO/@@download/ENCFF058UWO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/6d81bd89-af38-4cf6-8a69-a3a140bd78c8/ENCFF058UWO.fastq.gz experiment not submitted to GEO ENCFF163UHB fastq reads ENCSR012YAB ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF058UWO 2999751023 Bing Ren, UCSD 858601b96008cdc2d8b8c0a0d17cb315 https://www.encodeproject.org/files/ENCFF163UHB/@@download/ENCFF163UHB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/1e4b1cbd-c0f5-4d00-961b-0e3fe8c564a3/ENCFF163UHB.fastq.gz experiment not submitted to GEO ENCFF635ZQL fastq reads ENCSR012YAB ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF753PKM 1720610733 Bing Ren, UCSD 4648c77fc569180992a118460a3a765b https://www.encodeproject.org/files/ENCFF635ZQL/@@download/ENCFF635ZQL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/9925f6e2-2a1f-4f54-8e08-a2f7e2830c35/ENCFF635ZQL.fastq.gz experiment not submitted to GEO ENCFF709CLT fastq reads ENCSR662KNY ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF213OUA 1976420771 Bing Ren, UCSD 6110c05c5c513d3cdbc021e3cb98e5a8 https://www.encodeproject.org/files/ENCFF709CLT/@@download/ENCFF709CLT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/6a8b1000-d66f-4243-a1d6-dc3fe1a661c6/ENCFF709CLT.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF761JHA fastq reads ENCSR662KNY ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF181OVJ 1030159432 Bing Ren, UCSD 936384399e77c22406ded1a8446ec2a0 https://www.encodeproject.org/files/ENCFF761JHA/@@download/ENCFF761JHA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/d96af155-3e3f-4773-8719-a2911857c3f8/ENCFF761JHA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF181OVJ fastq reads ENCSR662KNY ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF761JHA 1107295304 Bing Ren, UCSD 6a8e1a6b43278d829b580899322c9821 https://www.encodeproject.org/files/ENCFF181OVJ/@@download/ENCFF181OVJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/5e65a5ab-802a-41e7-aa9f-58268601503a/ENCFF181OVJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF213OUA fastq reads ENCSR662KNY ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF709CLT 1822039841 Bing Ren, UCSD 2379b1079ffe07a68a1724d2f2866cec https://www.encodeproject.org/files/ENCFF213OUA/@@download/ENCFF213OUA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/e5f0058d-4dc5-4eb0-ae17-c8bb2e2dbf47/ENCFF213OUA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF672EYN fastq reads ENCSR460BUL ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF981BBK 1076811806 Bing Ren, UCSD a2c28a2984bc162534098cde1f58af91 https://www.encodeproject.org/files/ENCFF672EYN/@@download/ENCFF672EYN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/fa7de8bc-2963-4c55-8ff7-c9f6ad6d1de7/ENCFF672EYN.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF981BBK fastq reads ENCSR460BUL ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF672EYN 1141793451 Bing Ren, UCSD 50b5c49d6b2689b0d05e7c54431c7b11 https://www.encodeproject.org/files/ENCFF981BBK/@@download/ENCFF981BBK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/a87d6749-9c86-4a1f-92ed-208dc3c0b667/ENCFF981BBK.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF948NPO fastq reads ENCSR460BUL ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF634JLT 916744858 Bing Ren, UCSD 2a91da915ce5bfed8c39aaf72ef4e902 https://www.encodeproject.org/files/ENCFF948NPO/@@download/ENCFF948NPO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/26584339-87f3-4b46-ae94-5bdc8d16dd91/ENCFF948NPO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF634JLT fastq reads ENCSR460BUL ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF948NPO 978796372 Bing Ren, UCSD 53e0520f2f9967b14ee418db25cb7991 https://www.encodeproject.org/files/ENCFF634JLT/@@download/ENCFF634JLT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/8aaae454-7d41-4fe9-9241-2d5401546c81/ENCFF634JLT.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF331IGF fastq reads ENCSR176BYZ ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF409GTD 1355972395 Bing Ren, UCSD b293561964000c5f66cd7660da70ff19 https://www.encodeproject.org/files/ENCFF331IGF/@@download/ENCFF331IGF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/b2e76268-ce8f-4baf-9919-0480e334cae9/ENCFF331IGF.fastq.gz experiment not submitted to GEO ENCFF071AXB fastq reads ENCSR176BYZ ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF628CBN 1416368776 Bing Ren, UCSD 7ec7d5c6ad5ae2a8704ecf7daa12e4f9 https://www.encodeproject.org/files/ENCFF071AXB/@@download/ENCFF071AXB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/d2a01503-ad34-4a57-941d-c43b8169b765/ENCFF071AXB.fastq.gz experiment not submitted to GEO ENCFF628CBN fastq reads ENCSR176BYZ ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF071AXB 1572448820 Bing Ren, UCSD d8222f2958ed61b731cb9eb05974af54 https://www.encodeproject.org/files/ENCFF628CBN/@@download/ENCFF628CBN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/6a556014-5966-4f1d-aade-1d461eedac4e/ENCFF628CBN.fastq.gz experiment not submitted to GEO ENCFF409GTD fastq reads ENCSR176BYZ ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF331IGF 1500571078 Bing Ren, UCSD 1adad9cf882101b7911fa5ee92230803 https://www.encodeproject.org/files/ENCFF409GTD/@@download/ENCFF409GTD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/5c707d33-ff33-4103-911b-2c36c8606d88/ENCFF409GTD.fastq.gz experiment not submitted to GEO ENCFF325FCQ fastq reads ENCSR889WQX ATAC-seq UBERON:0001870 frontal cortex tissue Mus musculus DNA see document ATAC buffer True 2017-06-21 ENCODE 1 1 100 single-ended 944855003 Barbara Wold, Caltech 1c1540c64a3bbfa0a551ffc0055d1a5d https://www.encodeproject.org/files/ENCFF325FCQ/@@download/ENCFF325FCQ.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/0aac1212-95a5-4675-bcd4-2db39d517ef8/ENCFF325FCQ.fastq.gz experiment not submitted to GEO ENCFF439VSY fastq reads ENCSR889WQX ATAC-seq UBERON:0001870 frontal cortex tissue Mus musculus DNA see document ATAC buffer True 2017-06-21 ENCODE 1 1 50 single-ended 1231432398 Barbara Wold, Caltech abee6d8e00e86e8e06d0b7586492b68c https://www.encodeproject.org/files/ENCFF439VSY/@@download/ENCFF439VSY.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/03880a75-1537-402c-9cbd-e23fb1dee109/ENCFF439VSY.fastq.gz experiment not submitted to GEO ENCFF683IQS fastq reads ENCSR889WQX ATAC-seq UBERON:0001870 frontal cortex tissue Mus musculus DNA see document ATAC buffer True 2017-06-21 ENCODE 1 1 50 single-ended 1225366149 Barbara Wold, Caltech b79a80f9c4ee3fa7442f9f18d485cb37 https://www.encodeproject.org/files/ENCFF683IQS/@@download/ENCFF683IQS.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/6b87eff1-ad28-4de8-9eb9-d622d0ee03e0/ENCFF683IQS.fastq.gz experiment not submitted to GEO ENCFF744CHW fastq reads ENCSR889WQX ATAC-seq UBERON:0001870 frontal cortex tissue Mus musculus DNA see document ATAC buffer True 2017-06-21 ENCODE 1 1 100 single-ended 948655017 Barbara Wold, Caltech 28be13767bb74ef6bf3a7e9bd8b7c62f https://www.encodeproject.org/files/ENCFF744CHW/@@download/ENCFF744CHW.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/1365b477-3e46-403b-afdd-d05d64b2609b/ENCFF744CHW.fastq.gz experiment not submitted to GEO ENCFF992TSA fastq reads ENCSR889WQX ATAC-seq UBERON:0001870 frontal cortex tissue Mus musculus DNA see document ATAC buffer True 2017-06-21 ENCODE 2 1 50 single-ended 1499259101 Barbara Wold, Caltech ec85e10b2d25a492cd626a4c4d077c00 https://www.encodeproject.org/files/ENCFF992TSA/@@download/ENCFF992TSA.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/4f9e4b72-8acf-411e-a554-a0384f2d5455/ENCFF992TSA.fastq.gz experiment not submitted to GEO ENCFF463QCX fastq reads ENCSR889WQX ATAC-seq UBERON:0001870 frontal cortex tissue Mus musculus DNA see document ATAC buffer True 2017-06-21 ENCODE 2 1 50 single-ended 1506131825 Barbara Wold, Caltech 902a16d1a657a320543fa453f3f9e545 https://www.encodeproject.org/files/ENCFF463QCX/@@download/ENCFF463QCX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/3b070a44-65a5-4a04-a004-1af59740415b/ENCFF463QCX.fastq.gz experiment not submitted to GEO ENCFF535AXY fastq reads ENCSR793RAV ATAC-seq CL:0000765 erythroblast primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 48 single-ended 4704929256 Ross Hardison, PennState c2c8c2b2ae3faa9f1d78cab1d0e10d50 https://www.encodeproject.org/files/ENCFF535AXY/@@download/ENCFF535AXY.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/9a2d8eed-1d2c-43cc-9f14-d2fe6c0b19bc/ENCFF535AXY.fastq.gz inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF637MAT fastq reads ENCSR793RAV ATAC-seq CL:0000765 erythroblast primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 48 single-ended 3245656675 Ross Hardison, PennState 4bf73fd2476147ce5953056b0ab59b92 https://www.encodeproject.org/files/ENCFF637MAT/@@download/ENCFF637MAT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/4413fc87-9622-49c1-9346-11569999684b/ENCFF637MAT.fastq.gz inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF971BVP fastq reads ENCSR793RAV ATAC-seq CL:0000765 erythroblast primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 48 single-ended 1314934805 Ross Hardison, PennState 273d322bc5174afb6c1e92076f96f804 https://www.encodeproject.org/files/ENCFF971BVP/@@download/ENCFF971BVP.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/27/7c5ecdf8-f7e1-42a0-8a39-36fc87dda570/ENCFF971BVP.fastq.gz inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF171RXE fastq reads ENCSR389CLN ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF144HIW 1480294928 Bing Ren, UCSD b17110c86642aa7e5ef03f3044288da8 https://www.encodeproject.org/files/ENCFF171RXE/@@download/ENCFF171RXE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/ad744da2-bce2-45f6-8bf9-5158babcb9bb/ENCFF171RXE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF144HIW fastq reads ENCSR389CLN ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF171RXE 1632865667 Bing Ren, UCSD f3eb6faa947f7586315fa2cdea14feec https://www.encodeproject.org/files/ENCFF144HIW/@@download/ENCFF144HIW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/a361c9d8-de1a-4ab1-8682-2e98c0a61779/ENCFF144HIW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF763EEB fastq reads ENCSR389CLN ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF765QFH 1164641284 Bing Ren, UCSD 0a40f8edcfc94a64fa909234d75753b6 https://www.encodeproject.org/files/ENCFF763EEB/@@download/ENCFF763EEB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/a46084c9-54dd-4316-bba8-8a5bf1360635/ENCFF763EEB.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF765QFH fastq reads ENCSR389CLN ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF763EEB 1267174227 Bing Ren, UCSD 470b55e6800a0fda1452983f475e75ff https://www.encodeproject.org/files/ENCFF765QFH/@@download/ENCFF765QFH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/a092dc68-5306-4091-9c52-b4f307301aae/ENCFF765QFH.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF416BZL fastq reads ENCSR371KFW ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF473REG 853331193 Bing Ren, UCSD 09834c6d05f9c5b785fc2f68717f2460 https://www.encodeproject.org/files/ENCFF416BZL/@@download/ENCFF416BZL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/d96ff654-0fab-4875-83ea-33230a54bed7/ENCFF416BZL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF473REG fastq reads ENCSR371KFW ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF416BZL 777652351 Bing Ren, UCSD 5c3b3f3af4411d92f5cf7dbb72efd12e https://www.encodeproject.org/files/ENCFF473REG/@@download/ENCFF473REG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/08a010f5-5cba-4811-b4e2-6b51fd0f80af/ENCFF473REG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF304CCF fastq reads ENCSR371KFW ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF778FWU 644676390 Bing Ren, UCSD f53ef98dde2e07e4ea50839f0e4fbe9a https://www.encodeproject.org/files/ENCFF304CCF/@@download/ENCFF304CCF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/65826817-2da2-401c-92cb-d5f8a1ad80aa/ENCFF304CCF.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF778FWU fastq reads ENCSR371KFW ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF304CCF 706971969 Bing Ren, UCSD bde30c05ecac88faeb3d7a92c78c4dc0 https://www.encodeproject.org/files/ENCFF778FWU/@@download/ENCFF778FWU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/df3271d9-0329-4a47-8b69-6e8c598911d8/ENCFF778FWU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF064NKM fastq reads ENCSR552ABC ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF100SXY 663640757 Bing Ren, UCSD 014225fad446c819b1dd2497f53ddf07 https://www.encodeproject.org/files/ENCFF064NKM/@@download/ENCFF064NKM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/c5b4e159-1f81-4dcd-afb3-653d15fed551/ENCFF064NKM.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF100SXY fastq reads ENCSR552ABC ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF064NKM 605909358 Bing Ren, UCSD 6877eac1217863d1731abc9de9de43e8 https://www.encodeproject.org/files/ENCFF100SXY/@@download/ENCFF100SXY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/f4cb9845-443d-48b9-9945-2de63a9de8c3/ENCFF100SXY.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF406EUS fastq reads ENCSR552ABC ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF559NSG 479002443 Bing Ren, UCSD d4e9306f7aa68f0f10922903dd0d10a9 https://www.encodeproject.org/files/ENCFF406EUS/@@download/ENCFF406EUS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/4d9df519-7526-471a-86c7-91436952908c/ENCFF406EUS.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF559NSG fastq reads ENCSR552ABC ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF406EUS 526116227 Bing Ren, UCSD c21c3cb26621b3ab69cfd33c66dda716 https://www.encodeproject.org/files/ENCFF559NSG/@@download/ENCFF559NSG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/25ebd98b-7709-43b4-b234-d6157e573985/ENCFF559NSG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF166GCN fastq reads ENCSR211OCS ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF713VTW 1381378592 Bing Ren, UCSD b6e289d3dc5066675df4a08c4ae71bb0 https://www.encodeproject.org/files/ENCFF166GCN/@@download/ENCFF166GCN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/6128a5d0-6759-4097-b8dd-079ad1ff6e84/ENCFF166GCN.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF073BZO fastq reads ENCSR211OCS ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF470CPP 2059908695 Bing Ren, UCSD 01b7ad48ddae8f14a0556da91afcb2e4 https://www.encodeproject.org/files/ENCFF073BZO/@@download/ENCFF073BZO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/48a08184-30ce-476d-99d6-584d12edabf9/ENCFF073BZO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF713VTW fastq reads ENCSR211OCS ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF166GCN 1222027595 Bing Ren, UCSD 8298a5c1b0cd22a944ea3d4308ce2457 https://www.encodeproject.org/files/ENCFF713VTW/@@download/ENCFF713VTW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/dccaa327-3213-4f8d-9b4f-1904643b94b8/ENCFF713VTW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF470CPP fastq reads ENCSR211OCS ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF073BZO 1872912017 Bing Ren, UCSD e16fe3a46af6dd07943311ab1add26ce https://www.encodeproject.org/files/ENCFF470CPP/@@download/ENCFF470CPP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/6b5f5679-63b5-4025-abd4-26c094a11d66/ENCFF470CPP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF476NYE fastq reads ENCSR154BXN ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF680STO 1174999855 Bing Ren, UCSD 8a25c4ee7072d0683414662d840457ff https://www.encodeproject.org/files/ENCFF476NYE/@@download/ENCFF476NYE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/c73f43da-0705-4e12-b25d-1e3ab322ea7c/ENCFF476NYE.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF867CGI fastq reads ENCSR154BXN ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF194BBQ 1638660355 Bing Ren, UCSD 0d800e8c69cd1924107e8e2e9d790a3b https://www.encodeproject.org/files/ENCFF867CGI/@@download/ENCFF867CGI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/9bd2f6b3-fd96-4203-bafe-2e06725edfd5/ENCFF867CGI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF194BBQ fastq reads ENCSR154BXN ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF867CGI 1515237228 Bing Ren, UCSD 6c12ef959a7f83bafe8c3a28eab878b2 https://www.encodeproject.org/files/ENCFF194BBQ/@@download/ENCFF194BBQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/78a40141-e8f1-4a48-9389-816da3f05668/ENCFF194BBQ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF680STO fastq reads ENCSR154BXN ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF476NYE 1069590471 Bing Ren, UCSD 579ffbabd6937fdf59a1f74964223fa5 https://www.encodeproject.org/files/ENCFF680STO/@@download/ENCFF680STO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/f722ebab-e168-4738-8870-82cb33e4d277/ENCFF680STO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF169QUZ fastq reads ENCSR079GOY ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF742CFJ 1373101909 Bing Ren, UCSD 46a8c4f99e64efaedf54e022395ff06d https://www.encodeproject.org/files/ENCFF169QUZ/@@download/ENCFF169QUZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/609763ff-3695-459f-bfbc-af933877342e/ENCFF169QUZ.fastq.gz experiment not submitted to GEO ENCFF780FQW fastq reads ENCSR079GOY ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF039HAM 1647646304 Bing Ren, UCSD 642016cc2a193eb1abe00b1146ee8db9 https://www.encodeproject.org/files/ENCFF780FQW/@@download/ENCFF780FQW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/385c253f-b9db-4d83-8c31-d19ce65a8fe0/ENCFF780FQW.fastq.gz experiment not submitted to GEO ENCFF039HAM fastq reads ENCSR079GOY ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF780FQW 1519750561 Bing Ren, UCSD d25ba3818da0297d1bdc3abd75ec8063 https://www.encodeproject.org/files/ENCFF039HAM/@@download/ENCFF039HAM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/fe4829d6-bd8d-4276-b154-460349db2444/ENCFF039HAM.fastq.gz experiment not submitted to GEO ENCFF742CFJ fastq reads ENCSR079GOY ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF169QUZ 1477019413 Bing Ren, UCSD 7882389f381d88acf9d4a80048f417e5 https://www.encodeproject.org/files/ENCFF742CFJ/@@download/ENCFF742CFJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/a7976a8c-43ba-471a-b7e9-7e149b6513ff/ENCFF742CFJ.fastq.gz experiment not submitted to GEO ENCFF741MLW fastq reads ENCSR150RMQ ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF460ETY 956955097 Bing Ren, UCSD 6a280b56d2565c3abe1e597b1fede409 https://www.encodeproject.org/files/ENCFF741MLW/@@download/ENCFF741MLW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/961432e0-d896-4785-ac90-73ab12fbd2f5/ENCFF741MLW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF460ETY fastq reads ENCSR150RMQ ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF741MLW 1041246962 Bing Ren, UCSD bd9184667228d6a2e14da79fe5aaea39 https://www.encodeproject.org/files/ENCFF460ETY/@@download/ENCFF460ETY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/86c5c242-0267-4782-9121-eb0abd9f97b4/ENCFF460ETY.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF667CEX fastq reads ENCSR150RMQ ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF165UKX 1010309854 Bing Ren, UCSD d0ebb8a05fd6863f095c71946227ab00 https://www.encodeproject.org/files/ENCFF667CEX/@@download/ENCFF667CEX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/28625b13-9c86-4e19-b7cb-dd2f4786ce93/ENCFF667CEX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF165UKX fastq reads ENCSR150RMQ ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF667CEX 1098662849 Bing Ren, UCSD 0deeddc3fcc460ed841a4875f66d11c7 https://www.encodeproject.org/files/ENCFF165UKX/@@download/ENCFF165UKX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/c677ef41-dfbb-459e-a725-1d48307cd333/ENCFF165UKX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF629FRA fastq reads ENCSR204ZTY ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF222KJL 1110852007 Bing Ren, UCSD 76d4196f735ba4394e3620aaedfea851 https://www.encodeproject.org/files/ENCFF629FRA/@@download/ENCFF629FRA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/70f17839-2224-4990-9339-115eb135669f/ENCFF629FRA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF488EFS fastq reads ENCSR204ZTY ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF917DTZ 1011560105 Bing Ren, UCSD 53d81eb7007481b15e18a9076d3ef3ca https://www.encodeproject.org/files/ENCFF488EFS/@@download/ENCFF488EFS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/9653d7c7-d5e4-4838-b7f0-69b116b4e854/ENCFF488EFS.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF917DTZ fastq reads ENCSR204ZTY ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF488EFS 1063897061 Bing Ren, UCSD 4dcca6fb9432ab440fc74aa6a17d3914 https://www.encodeproject.org/files/ENCFF917DTZ/@@download/ENCFF917DTZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/69b9ee26-b8a4-46b7-b9de-86397688fd57/ENCFF917DTZ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF222KJL fastq reads ENCSR204ZTY ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF629FRA 1173436934 Bing Ren, UCSD 7c3feb29315a398a6acb1c0877eacdce https://www.encodeproject.org/files/ENCFF222KJL/@@download/ENCFF222KJL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/f4cca744-5cbc-49dc-a83f-41e942944b75/ENCFF222KJL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF187TFB fastq reads ENCSR554JQP ATAC-seq UBERON:0002037 cerebellum tissue Mus musculus DNA see document ATAC buffer True 2017-10-09 ENCODE 1 1 50 single-ended 799578323 Barbara Wold, Caltech 40ebfe07a0e16501026465719a047768 https://www.encodeproject.org/files/ENCFF187TFB/@@download/ENCFF187TFB.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/25feb1e4-64e9-4db2-b721-33630a2a63c8/ENCFF187TFB.fastq.gz experiment not submitted to GEO ENCFF117BTA fastq reads ENCSR554JQP ATAC-seq UBERON:0002037 cerebellum tissue Mus musculus DNA see document ATAC buffer True 2017-10-09 ENCODE 1 1 50 single-ended 803413530 Barbara Wold, Caltech fb2eb5175f753b745797c4df643e3c79 https://www.encodeproject.org/files/ENCFF117BTA/@@download/ENCFF117BTA.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/ec06ed0c-8a8e-430d-a7e5-de33ac850e40/ENCFF117BTA.fastq.gz experiment not submitted to GEO ENCFF856AGF fastq reads ENCSR554JQP ATAC-seq UBERON:0002037 cerebellum tissue Mus musculus DNA see document ATAC buffer True 2017-10-09 ENCODE 2 1 50 single-ended 1152608729 Barbara Wold, Caltech a367d7fda26f04110eaaf43fa7e4af55 https://www.encodeproject.org/files/ENCFF856AGF/@@download/ENCFF856AGF.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/dfebd705-d278-43e7-b1a9-5c94bd21b601/ENCFF856AGF.fastq.gz experiment not submitted to GEO ENCFF606DRR fastq reads ENCSR554JQP ATAC-seq UBERON:0002037 cerebellum tissue Mus musculus DNA see document ATAC buffer True 2017-10-09 ENCODE 1 1 100 single-ended 1332339956 Barbara Wold, Caltech 4b704475f522a68f2d9b9eb1fc507af8 https://www.encodeproject.org/files/ENCFF606DRR/@@download/ENCFF606DRR.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/8e7e2076-d86e-4604-bb33-f47a376f9ab4/ENCFF606DRR.fastq.gz experiment not submitted to GEO ENCFF300LZD fastq reads ENCSR554JQP ATAC-seq UBERON:0002037 cerebellum tissue Mus musculus DNA see document ATAC buffer True 2017-10-09 ENCODE 1 1 100 single-ended 1325534491 Barbara Wold, Caltech 6989c70d9bf9a4eff6e518a96f6988cc https://www.encodeproject.org/files/ENCFF300LZD/@@download/ENCFF300LZD.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/7573c163-cc12-4c76-aa5d-29128d5e1157/ENCFF300LZD.fastq.gz experiment not submitted to GEO ENCFF896HKX fastq reads ENCSR554JQP ATAC-seq UBERON:0002037 cerebellum tissue Mus musculus DNA see document ATAC buffer True 2017-10-09 ENCODE 2 1 50 single-ended 1155025339 Barbara Wold, Caltech 8b790e8b4fc06c73126346ac738eb231 https://www.encodeproject.org/files/ENCFF896HKX/@@download/ENCFF896HKX.fastq.gz Illumina HiSeq 2500 released s3://encode-public/2015/11/30/8346508e-214f-4985-b81d-36b9c54a3a5b/ENCFF896HKX.fastq.gz experiment not submitted to GEO ENCFF021GRI fastq reads ENCSR732OTZ ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF413HET 1618437152 Bing Ren, UCSD f39f9304525a7c87eda7f688b1d8f620 https://www.encodeproject.org/files/ENCFF021GRI/@@download/ENCFF021GRI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/18140f12-eb99-467f-8a58-7df67d4b1a88/ENCFF021GRI.fastq.gz experiment not submitted to GEO ENCFF573ZOR fastq reads ENCSR732OTZ ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF326PPN 1221251804 Bing Ren, UCSD bebbe2204d5a38d1b606310c24e8c6ab https://www.encodeproject.org/files/ENCFF573ZOR/@@download/ENCFF573ZOR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/f9c17821-b9e4-455a-b919-a3dc26c192cb/ENCFF573ZOR.fastq.gz experiment not submitted to GEO ENCFF413HET fastq reads ENCSR732OTZ ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF021GRI 1452735284 Bing Ren, UCSD fa073739cc8a8bfd8d3ec138a4b715fc https://www.encodeproject.org/files/ENCFF413HET/@@download/ENCFF413HET.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/3d697273-c460-47c9-bf3e-3f1c772a363e/ENCFF413HET.fastq.gz experiment not submitted to GEO ENCFF326PPN fastq reads ENCSR732OTZ ATAC-seq UBERON:0002113 kidney tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF573ZOR 1328171926 Bing Ren, UCSD 6cfe574f1e3ae6aee32cbfad7ddb5c9b https://www.encodeproject.org/files/ENCFF326PPN/@@download/ENCFF326PPN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/f72e57d4-e94a-4d9c-b541-0aea34d88d2c/ENCFF326PPN.fastq.gz experiment not submitted to GEO ENCFF248PXW fastq reads ENCSR976LWP ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF825UHO 1705933839 Bing Ren, UCSD c9f3c42083fbbaecde63eeb6a2047700 https://www.encodeproject.org/files/ENCFF248PXW/@@download/ENCFF248PXW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/611e0fdd-e1d9-4b78-a252-029d599c6be9/ENCFF248PXW.fastq.gz experiment not submitted to GEO ENCFF906VXU fastq reads ENCSR976LWP ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF500SXI 1380745361 Bing Ren, UCSD b1e5d408b0c41e7626af79e9783b32cf https://www.encodeproject.org/files/ENCFF906VXU/@@download/ENCFF906VXU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/e6c876f5-8095-4749-b725-b75ca7e0e844/ENCFF906VXU.fastq.gz experiment not submitted to GEO ENCFF500SXI fastq reads ENCSR976LWP ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF906VXU 1508123311 Bing Ren, UCSD 7c23b37577b43bbda51649a7d874935b https://www.encodeproject.org/files/ENCFF500SXI/@@download/ENCFF500SXI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/843393c1-034c-4e65-856b-6c121d594512/ENCFF500SXI.fastq.gz experiment not submitted to GEO ENCFF825UHO fastq reads ENCSR976LWP ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF248PXW 1853136110 Bing Ren, UCSD 98e84c2be42030c067f158faff325149 https://www.encodeproject.org/files/ENCFF825UHO/@@download/ENCFF825UHO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/b87bd639-a03b-4fe4-a96b-a18dada28e46/ENCFF825UHO.fastq.gz experiment not submitted to GEO ENCFF199CEQ fastq reads ENCSR229QKB ATAC-seq CL:0000553 megakaryocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 48 single-ended 5225816958 Ross Hardison, PennState 8e595a7b810d0efb9f93ad84474571ac https://www.encodeproject.org/files/ENCFF199CEQ/@@download/ENCFF199CEQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/2fa5b02a-cad1-4988-b033-2639c37122a0/ENCFF199CEQ.fastq.gz inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF343AEN fastq reads ENCSR229QKB ATAC-seq CL:0000553 megakaryocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 48 single-ended 4908555543 Ross Hardison, PennState a9c0a17cde6e1b92679c967847bba7f3 https://www.encodeproject.org/files/ENCFF343AEN/@@download/ENCFF343AEN.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/05cecca2-7d59-41f2-824a-f375919c5e19/ENCFF343AEN.fastq.gz inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF551XEJ fastq reads ENCSR229QKB ATAC-seq CL:0000553 megakaryocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 48 single-ended 1210619712 Ross Hardison, PennState 8739608097ceead592e4132a05e49e85 https://www.encodeproject.org/files/ENCFF551XEJ/@@download/ENCFF551XEJ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/27/3fb18398-bb10-4aed-a4a3-defc68670382/ENCFF551XEJ.fastq.gz inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF888ZZV fastq reads ENCSR785NEL ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF288CVJ 1313473391 Bing Ren, UCSD 543db0c45d8bf6c615b11caf0ae51a22 https://www.encodeproject.org/files/ENCFF888ZZV/@@download/ENCFF888ZZV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/0c042c5d-b6b0-45f5-a885-2a088008f9df/ENCFF888ZZV.fastq.gz experiment not submitted to GEO ENCFF883SEZ fastq reads ENCSR785NEL ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF035OMK 2107472824 Bing Ren, UCSD 1688a8497f3e79c9a827401b1e3d07b2 https://www.encodeproject.org/files/ENCFF883SEZ/@@download/ENCFF883SEZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/8cd4d8ae-b269-4773-ad34-945d81d73a56/ENCFF883SEZ.fastq.gz experiment not submitted to GEO ENCFF035OMK fastq reads ENCSR785NEL ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF883SEZ 2286188047 Bing Ren, UCSD fd5a12db0b909be0d1f77364749335e8 https://www.encodeproject.org/files/ENCFF035OMK/@@download/ENCFF035OMK.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/765e6a36-70a3-4034-8a9c-0a6c4ab66f65/ENCFF035OMK.fastq.gz experiment not submitted to GEO ENCFF288CVJ fastq reads ENCSR785NEL ATAC-seq UBERON:0002107 liver tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF888ZZV 1186023348 Bing Ren, UCSD bc46b105d0336afa42e7b9b8877ad9e7 https://www.encodeproject.org/files/ENCFF288CVJ/@@download/ENCFF288CVJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/12ba1a4d-8161-4c49-97e4-7ee04caf3127/ENCFF288CVJ.fastq.gz experiment not submitted to GEO ENCFF215WAD fastq reads ENCSR312LQX ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF971XEA 2810400170 Bing Ren, UCSD a1404d340f0a37a429443764ebf53603 https://www.encodeproject.org/files/ENCFF215WAD/@@download/ENCFF215WAD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/4b5b6b9b-9dc7-4d2e-b9a9-960df105ebc5/ENCFF215WAD.fastq.gz experiment not submitted to GEO ENCFF131VHT fastq reads ENCSR312LQX ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF547YID 1387608882 Bing Ren, UCSD ee52204ee56d6c21a02a6ed462c03221 https://www.encodeproject.org/files/ENCFF131VHT/@@download/ENCFF131VHT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/a2e1f588-081c-4d38-9fde-df5c6b8ea134/ENCFF131VHT.fastq.gz experiment not submitted to GEO ENCFF971XEA fastq reads ENCSR312LQX ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF215WAD 2610878575 Bing Ren, UCSD b518a97ebaa4777a808f7d8341769631 https://www.encodeproject.org/files/ENCFF971XEA/@@download/ENCFF971XEA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/bce9783b-84c7-4bd0-90b1-4202a8ba9600/ENCFF971XEA.fastq.gz experiment not submitted to GEO ENCFF547YID fastq reads ENCSR312LQX ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF131VHT 1285632948 Bing Ren, UCSD 889e9b640a011d444d104f76fa29b3ec https://www.encodeproject.org/files/ENCFF547YID/@@download/ENCFF547YID.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/7b1d6363-19c3-4943-8b9d-c04085a75143/ENCFF547YID.fastq.gz experiment not submitted to GEO ENCFF568THX fastq reads ENCSR623GSD ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF196ILN 1407896301 Bing Ren, UCSD ea41a42e276c5391d2e3ad6ac24fa6db https://www.encodeproject.org/files/ENCFF568THX/@@download/ENCFF568THX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/11f45d51-3b9f-4ac5-a258-e5762f5d8205/ENCFF568THX.fastq.gz experiment not submitted to GEO ENCFF946KOT fastq reads ENCSR623GSD ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF950API 1813875181 Bing Ren, UCSD c78087cb08d7aa81708ff08afc225ccd https://www.encodeproject.org/files/ENCFF946KOT/@@download/ENCFF946KOT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/d70e9b34-81bf-42c5-a391-b07fdc44ed06/ENCFF946KOT.fastq.gz experiment not submitted to GEO ENCFF196ILN fastq reads ENCSR623GSD ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF568THX 1528713221 Bing Ren, UCSD e179403aa24acdd717174e0522f18429 https://www.encodeproject.org/files/ENCFF196ILN/@@download/ENCFF196ILN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/dc64736c-1fa0-4699-a71b-5fb9a42cf126/ENCFF196ILN.fastq.gz experiment not submitted to GEO ENCFF950API fastq reads ENCSR623GSD ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF946KOT 1674752078 Bing Ren, UCSD 163bfcca30dbbbdfe2d26ce0eb3dbc28 https://www.encodeproject.org/files/ENCFF950API/@@download/ENCFF950API.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/a81248ef-48ed-4d3e-9996-efaf06b4b50b/ENCFF950API.fastq.gz experiment not submitted to GEO ENCFF194NYS fastq reads ENCSR136XSY ATAC-seq CL:0000038 erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 48 single-ended 4413527128 Ross Hardison, PennState 9c82d34b878cd0d4f3184b3b9713d5b5 https://www.encodeproject.org/files/ENCFF194NYS/@@download/ENCFF194NYS.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/dafba440-7e14-4655-9612-d77291307d20/ENCFF194NYS.fastq.gz inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF765DWT fastq reads ENCSR136XSY ATAC-seq CL:0000038 erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 48 single-ended 3593591935 Ross Hardison, PennState 6446a0053719178bc6f7f87e719eff56 https://www.encodeproject.org/files/ENCFF765DWT/@@download/ENCFF765DWT.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/0909df92-db3e-4b36-9b1e-7f67baaabafd/ENCFF765DWT.fastq.gz inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF834KZY fastq reads ENCSR136XSY ATAC-seq CL:0000038 erythroid progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 48 single-ended 1511029565 Ross Hardison, PennState 9438a58d3048332c53869fe80feb08ea https://www.encodeproject.org/files/ENCFF834KZY/@@download/ENCFF834KZY.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/27/f46f5b13-cb63-4a5a-9a1b-f826fbc6f800/ENCFF834KZY.fastq.gz inconsistent platforms inconsistent BiosampleType term, mismatched file status, experiment not submitted to GEO ENCFF197GTC fastq reads ENCSR310MLB ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF209GGJ 1265056904 Bing Ren, UCSD a949366ed72752ca791f764da0bba450 https://www.encodeproject.org/files/ENCFF197GTC/@@download/ENCFF197GTC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/3b1b3e53-41ee-421b-8fb7-487dfdd7951a/ENCFF197GTC.fastq.gz experiment not submitted to GEO ENCFF209GGJ fastq reads ENCSR310MLB ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF197GTC 1410171177 Bing Ren, UCSD b187e12b102b3d9614c492c05438a15c https://www.encodeproject.org/files/ENCFF209GGJ/@@download/ENCFF209GGJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/e773174f-8118-41c6-8eeb-5f51892c55b1/ENCFF209GGJ.fastq.gz experiment not submitted to GEO ENCFF296GZG fastq reads ENCSR310MLB ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF664RZO 1505165357 Bing Ren, UCSD 9791910951e7eeff45f69bbfcfbc74bf https://www.encodeproject.org/files/ENCFF296GZG/@@download/ENCFF296GZG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/af1c3613-50e6-46c3-9981-67d01bf13602/ENCFF296GZG.fastq.gz experiment not submitted to GEO ENCFF664RZO fastq reads ENCSR310MLB ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF296GZG 1626875202 Bing Ren, UCSD d3ced564f3a1587b7a5e14273f947511 https://www.encodeproject.org/files/ENCFF664RZO/@@download/ENCFF664RZO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/5535e9f9-f00f-4926-9311-7c049717e2b2/ENCFF664RZO.fastq.gz experiment not submitted to GEO ENCFF705BQG fastq reads ENCSR102NGD ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF269YOD 2006622849 Bing Ren, UCSD 7abbd274475e77c17b4f86a2b45c9b08 https://www.encodeproject.org/files/ENCFF705BQG/@@download/ENCFF705BQG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/9fbb8a9c-7189-4180-bf96-8a3922b4d29e/ENCFF705BQG.fastq.gz experiment not submitted to GEO ENCFF269YOD fastq reads ENCSR102NGD ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF705BQG 2219753556 Bing Ren, UCSD d343a99bd96f190c3226c15d901537a0 https://www.encodeproject.org/files/ENCFF269YOD/@@download/ENCFF269YOD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/b8044400-d0d7-4b8b-9737-ece455696bcf/ENCFF269YOD.fastq.gz experiment not submitted to GEO ENCFF370OFA fastq reads ENCSR102NGD ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF150BVC 1642313921 Bing Ren, UCSD ea0a0fee1dc36bdd5e0129ea0cc0ca5a https://www.encodeproject.org/files/ENCFF370OFA/@@download/ENCFF370OFA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/42022ac1-36d5-4d63-ae87-8eb2d33addf8/ENCFF370OFA.fastq.gz experiment not submitted to GEO ENCFF150BVC fastq reads ENCSR102NGD ATAC-seq UBERON:0002048 lung tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF370OFA 1807454235 Bing Ren, UCSD 7d20503cf9fd109d11ee28087366b0df https://www.encodeproject.org/files/ENCFF150BVC/@@download/ENCFF150BVC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/c3081386-982f-44d7-a9ab-56317014235c/ENCFF150BVC.fastq.gz experiment not submitted to GEO ENCFF898NRO fastq reads ENCSR903GMO ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF401VUV 1763940486 Bing Ren, UCSD f8a468dda8719bbe101a118602254d78 https://www.encodeproject.org/files/ENCFF898NRO/@@download/ENCFF898NRO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/a6ee675c-8773-40cd-9416-e124f2ae66e7/ENCFF898NRO.fastq.gz experiment not submitted to GEO ENCFF777UKE fastq reads ENCSR903GMO ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF721LGJ 1798724296 Bing Ren, UCSD 442635892046fa3e6f86d0b9c180b68a https://www.encodeproject.org/files/ENCFF777UKE/@@download/ENCFF777UKE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/f435b300-3522-4731-aefc-fd6af56dd0be/ENCFF777UKE.fastq.gz experiment not submitted to GEO ENCFF401VUV fastq reads ENCSR903GMO ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF898NRO 1601520229 Bing Ren, UCSD dc877b50afa576ac3c8b0e3a3ce5a260 https://www.encodeproject.org/files/ENCFF401VUV/@@download/ENCFF401VUV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/1233aec2-ccc7-4c9d-a3a6-341ff36df22c/ENCFF401VUV.fastq.gz experiment not submitted to GEO ENCFF721LGJ fastq reads ENCSR903GMO ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF777UKE 1653400576 Bing Ren, UCSD 1760991aaa63f19f4cc5e995059a4e08 https://www.encodeproject.org/files/ENCFF721LGJ/@@download/ENCFF721LGJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/6b412f65-be27-4c7c-b2cd-997370722052/ENCFF721LGJ.fastq.gz experiment not submitted to GEO ENCFF954MPR fastq reads ENCSR088UYE ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF824PVC 1660330784 Bing Ren, UCSD 918f03be9cb4a1f28a52ba8b755ded7f https://www.encodeproject.org/files/ENCFF954MPR/@@download/ENCFF954MPR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/42506550-8b56-4ffa-802e-fcf4175fdd5e/ENCFF954MPR.fastq.gz experiment not submitted to GEO ENCFF824PVC fastq reads ENCSR088UYE ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF954MPR 1841910384 Bing Ren, UCSD 1cb783c77e1458398c6af9b802fd6862 https://www.encodeproject.org/files/ENCFF824PVC/@@download/ENCFF824PVC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/af499171-c26b-4134-b925-914828b908f2/ENCFF824PVC.fastq.gz experiment not submitted to GEO ENCFF199WNL fastq reads ENCSR088UYE ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF968KUR 1716138115 Bing Ren, UCSD 46715389bc83d58832467aa3b2481521 https://www.encodeproject.org/files/ENCFF199WNL/@@download/ENCFF199WNL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/3b1cc1f4-2c76-4c7c-9756-f2561a2effc8/ENCFF199WNL.fastq.gz experiment not submitted to GEO ENCFF968KUR fastq reads ENCSR088UYE ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF199WNL 1864197193 Bing Ren, UCSD fb90eaf3aece2f489391ca01d60b5277 https://www.encodeproject.org/files/ENCFF968KUR/@@download/ENCFF968KUR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/e5ee292d-609f-4538-909b-1c461eb7d5d9/ENCFF968KUR.fastq.gz experiment not submitted to GEO ENCFF608AWT fastq reads ENCSR983JWA ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF847BCI 1754713248 Bing Ren, UCSD 9821884cad93266b361b58e1bb6c4b17 https://www.encodeproject.org/files/ENCFF608AWT/@@download/ENCFF608AWT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/fb12aefa-916c-4497-ba84-e957260aea13/ENCFF608AWT.fastq.gz experiment not submitted to GEO ENCFF847BCI fastq reads ENCSR983JWA ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF608AWT 1508682912 Bing Ren, UCSD f319944c679e82140e8aaf5a0bc318ab https://www.encodeproject.org/files/ENCFF847BCI/@@download/ENCFF847BCI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/88415b81-46d9-4137-a6a0-4263f7c9dcb6/ENCFF847BCI.fastq.gz experiment not submitted to GEO ENCFF551SAG fastq reads ENCSR983JWA ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF166QOA 1323303169 Bing Ren, UCSD 8df95b316a175fac2cb1171117cfa407 https://www.encodeproject.org/files/ENCFF551SAG/@@download/ENCFF551SAG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/92844b9e-83f6-477c-b575-ecaaa8df1336/ENCFF551SAG.fastq.gz experiment not submitted to GEO ENCFF166QOA fastq reads ENCSR983JWA ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF551SAG 1533421235 Bing Ren, UCSD 3f5587e8e44e261f59b190fba7b7f975 https://www.encodeproject.org/files/ENCFF166QOA/@@download/ENCFF166QOA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/cc085806-3b77-454b-a13b-c42f1d96a7a9/ENCFF166QOA.fastq.gz experiment not submitted to GEO ENCFF058IAE fastq reads ENCSR836PUC ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF765HUX 1341474166 Bing Ren, UCSD a2b56f0017ba78502c0b758d68e952e0 https://www.encodeproject.org/files/ENCFF058IAE/@@download/ENCFF058IAE.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/b6ca1468-1338-4028-b61c-cfc0ffa60a46/ENCFF058IAE.fastq.gz experiment not submitted to GEO ENCFF776GDQ fastq reads ENCSR836PUC ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF588XZG 1398463995 Bing Ren, UCSD b49d3f0f815d7c3ebbbdcac6832a8eff https://www.encodeproject.org/files/ENCFF776GDQ/@@download/ENCFF776GDQ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/9c0457f9-7441-48ab-8f13-a311b907f927/ENCFF776GDQ.fastq.gz experiment not submitted to GEO ENCFF588XZG fastq reads ENCSR836PUC ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF776GDQ 1509986840 Bing Ren, UCSD 6d8bc346922ad7a806055095547a4487 https://www.encodeproject.org/files/ENCFF588XZG/@@download/ENCFF588XZG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/2158d626-9e27-410c-a280-3e732f2de071/ENCFF588XZG.fastq.gz experiment not submitted to GEO ENCFF765HUX fastq reads ENCSR836PUC ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF058IAE 1452939034 Bing Ren, UCSD 6bf7fd2a6c6be5396b9154469ed74e9e https://www.encodeproject.org/files/ENCFF765HUX/@@download/ENCFF765HUX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/b54587ec-3d14-4e6d-a7c7-e34d04fab3c0/ENCFF765HUX.fastq.gz experiment not submitted to GEO ENCFF267LVT fastq reads ENCSR468GUI ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF347QTV 1400104838 Bing Ren, UCSD eec5d03528b2c21dde804b8937f6a969 https://www.encodeproject.org/files/ENCFF267LVT/@@download/ENCFF267LVT.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/4ccab76c-07e2-4749-b86e-b717f580056b/ENCFF267LVT.fastq.gz experiment not submitted to GEO ENCFF187YXW fastq reads ENCSR468GUI ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF865ZYW 1944099053 Bing Ren, UCSD 4641714111f55cde9243d2acc303aa62 https://www.encodeproject.org/files/ENCFF187YXW/@@download/ENCFF187YXW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/6d4c93af-51d6-412e-9087-4ddd454e6209/ENCFF187YXW.fastq.gz experiment not submitted to GEO ENCFF865ZYW fastq reads ENCSR468GUI ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF187YXW 2144766251 Bing Ren, UCSD 8afe662e63848a8aa564ae0d4a71e37c https://www.encodeproject.org/files/ENCFF865ZYW/@@download/ENCFF865ZYW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/c0d1c1b7-f5c4-49c5-93d9-f32432c22dbe/ENCFF865ZYW.fastq.gz experiment not submitted to GEO ENCFF347QTV fastq reads ENCSR468GUI ATAC-seq UBERON:0001891 midbrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF267LVT 1556814697 Bing Ren, UCSD cb725a3becde12b0cf42fa495c025ebc https://www.encodeproject.org/files/ENCFF347QTV/@@download/ENCFF347QTV.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/a597acd9-afd8-4217-b485-494deb6b6d0a/ENCFF347QTV.fastq.gz experiment not submitted to GEO ENCFF963YIU fastq reads ENCSR273UFV ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF419LDW 1857920085 Bing Ren, UCSD a1005210b9a2dff93cfc9e555a7d8171 https://www.encodeproject.org/files/ENCFF963YIU/@@download/ENCFF963YIU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/b57f8024-1c02-4afa-96b1-8797f4e3b0c1/ENCFF963YIU.fastq.gz experiment not submitted to GEO ENCFF083TDB fastq reads ENCSR273UFV ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF680UAR 1691144102 Bing Ren, UCSD 10c05a097a891073b0f408440a8bc272 https://www.encodeproject.org/files/ENCFF083TDB/@@download/ENCFF083TDB.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/f39325f1-d5fd-44b9-bc80-6ab761de17e2/ENCFF083TDB.fastq.gz experiment not submitted to GEO ENCFF419LDW fastq reads ENCSR273UFV ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF963YIU 1709394168 Bing Ren, UCSD 134da3be24392baf6525588e65288ef7 https://www.encodeproject.org/files/ENCFF419LDW/@@download/ENCFF419LDW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/576883b3-a5b7-4a0b-8188-b427b7254a49/ENCFF419LDW.fastq.gz experiment not submitted to GEO ENCFF680UAR fastq reads ENCSR273UFV ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF083TDB 1846168663 Bing Ren, UCSD cd13ed1b2b78682d5e62819fc4dafb70 https://www.encodeproject.org/files/ENCFF680UAR/@@download/ENCFF680UAR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/f697c79c-f76b-444f-9120-5a58f506278e/ENCFF680UAR.fastq.gz experiment not submitted to GEO ENCFF266VLC fastq reads ENCSR798FDL ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF868CEL 2240498830 Bing Ren, UCSD de58e8b05aed2c1d987381883fafdbf6 https://www.encodeproject.org/files/ENCFF266VLC/@@download/ENCFF266VLC.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/68205185-e957-4274-8a6f-5e61c13ff994/ENCFF266VLC.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF868CEL fastq reads ENCSR798FDL ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF266VLC 2081937819 Bing Ren, UCSD 448a8192efb289c25e0c81a336c0b3e5 https://www.encodeproject.org/files/ENCFF868CEL/@@download/ENCFF868CEL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/31919c45-e333-4d56-96a0-540354246585/ENCFF868CEL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF673MIM fastq reads ENCSR798FDL ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF657XRO 1260588645 Bing Ren, UCSD 5532d7ccd4ea1ae9e18e1bde86095a5a https://www.encodeproject.org/files/ENCFF673MIM/@@download/ENCFF673MIM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/761c8db8-e529-4971-b009-9a907a0a349b/ENCFF673MIM.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF657XRO fastq reads ENCSR798FDL ATAC-seq UBERON:0002028 hindbrain tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF673MIM 1389406407 Bing Ren, UCSD 824b5b7b220678be5ba3a76b72629c5a https://www.encodeproject.org/files/ENCFF657XRO/@@download/ENCFF657XRO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/8db02319-946c-45b0-9c0b-bd6ca0f31c4e/ENCFF657XRO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF442YHM fastq reads ENCSR993QKC ATAC-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus DNA False 2017-03-07 GGR 1 2 50 paired-ended 1 ENCFF379WRX 1368499868 Christina Leslie, MSKCC ffa3ab703de309b467b018d0e8457f3e https://www.encodeproject.org/files/ENCFF442YHM/@@download/ENCFF442YHM.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/05/68554e33-80dd-4534-9731-383f2b2af3e0/ENCFF442YHM.fastq.gz NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF177WUQ fastq reads ENCSR993QKC ATAC-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus DNA False 2017-03-07 GGR 1 1 50 paired-ended 1 ENCFF688QCB 942877427 Christina Leslie, MSKCC 945ce12932e077d60537ae890db68791 https://www.encodeproject.org/files/ENCFF177WUQ/@@download/ENCFF177WUQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/05/bfa92ed7-88b2-4dfb-8098-3a72eb748925/ENCFF177WUQ.fastq.gz NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF688QCB fastq reads ENCSR993QKC ATAC-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus DNA False 2017-03-07 GGR 1 1 50 paired-ended 2 ENCFF177WUQ 956377200 Christina Leslie, MSKCC 7115d58b247d1e2268b7cccfccad0893 https://www.encodeproject.org/files/ENCFF688QCB/@@download/ENCFF688QCB.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/05/be386799-16d4-4eda-99c2-10495b78808d/ENCFF688QCB.fastq.gz NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF379WRX fastq reads ENCSR993QKC ATAC-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus DNA False 2017-03-07 GGR 1 2 50 paired-ended 2 ENCFF442YHM 1386552069 Christina Leslie, MSKCC e303b63ae3bf81cb8f4239743f35282d https://www.encodeproject.org/files/ENCFF379WRX/@@download/ENCFF379WRX.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2016/08/05/e35d9568-e7ce-4661-9e4b-41e416feec6b/ENCFF379WRX.fastq.gz NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF103PCA fastq reads ENCSR896XIN ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF508LJX 1244284365 Bing Ren, UCSD e41eb6c3b86d7336d61d0cde50c58e4c https://www.encodeproject.org/files/ENCFF103PCA/@@download/ENCFF103PCA.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/b87da3f2-8dec-4160-8321-0885c9880b8f/ENCFF103PCA.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF506NVN fastq reads ENCSR896XIN ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF732HZX 985427119 Bing Ren, UCSD 1bb324cf4487c53e9304b5afd3573109 https://www.encodeproject.org/files/ENCFF506NVN/@@download/ENCFF506NVN.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/737a0855-c66a-4fae-aac3-39ed3a767255/ENCFF506NVN.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF732HZX fastq reads ENCSR896XIN ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF506NVN 934464105 Bing Ren, UCSD 7f4dddb882e778e7531a4ef4d17ad796 https://www.encodeproject.org/files/ENCFF732HZX/@@download/ENCFF732HZX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/b2eccf4f-2804-4d1a-8355-9fc6aa3c8592/ENCFF732HZX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF508LJX fastq reads ENCSR896XIN ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF103PCA 1183478148 Bing Ren, UCSD 638e4c87643ef5c3b3548e4fe20ce29f https://www.encodeproject.org/files/ENCFF508LJX/@@download/ENCFF508LJX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/208f6340-64a2-4ac0-beab-d14a84b5d59b/ENCFF508LJX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF336EQO fastq reads ENCSR217NOA ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF308AMG 1310434296 Bing Ren, UCSD d60aad64be033607ebe1e50a97577e07 https://www.encodeproject.org/files/ENCFF336EQO/@@download/ENCFF336EQO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/1e385ddc-ee84-4d7d-96a0-9e28fbaf3527/ENCFF336EQO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF308AMG fastq reads ENCSR217NOA ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF336EQO 1535723160 Bing Ren, UCSD a67ab9fe07c55038d510ef1d6d272816 https://www.encodeproject.org/files/ENCFF308AMG/@@download/ENCFF308AMG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/536f6d89-7cdd-4bc2-813c-f62951534849/ENCFF308AMG.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF843JWW fastq reads ENCSR217NOA ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF577DNF 1033388860 Bing Ren, UCSD 1c2d6ce4b32350e3bf11be3629a5f0bd https://www.encodeproject.org/files/ENCFF843JWW/@@download/ENCFF843JWW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/27ed12b6-c310-4cdf-9b0e-7f54e9309b6a/ENCFF843JWW.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF577DNF fastq reads ENCSR217NOA ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF843JWW 1211518728 Bing Ren, UCSD b1159e59922de32c35f537cd9979e63a https://www.encodeproject.org/files/ENCFF577DNF/@@download/ENCFF577DNF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/a7535248-ecc4-493b-97e8-bc1b3851592e/ENCFF577DNF.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF133CWQ fastq reads ENCSR257PGU ATAC-seq CL:0000557 granulocyte monocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 48 single-ended 4369567493 Ross Hardison, PennState 05376c847c791cbf94eddb79d6e23364 https://www.encodeproject.org/files/ENCFF133CWQ/@@download/ENCFF133CWQ.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/9daf11a5-a1f4-4bbe-88af-9991af247217/ENCFF133CWQ.fastq.gz inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF248WQE fastq reads ENCSR257PGU ATAC-seq CL:0000557 granulocyte monocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 2 1 48 single-ended 5412588330 Ross Hardison, PennState 6aff4defc3d8dcd1a1bd631f16e02f6e https://www.encodeproject.org/files/ENCFF248WQE/@@download/ENCFF248WQE.fastq.gz Illumina HiSeq 2000 released s3://encode-public/2015/07/31/27b74310-5fe3-489b-b72c-b65d3dc93684/ENCFF248WQE.fastq.gz inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF942VKT fastq reads ENCSR257PGU ATAC-seq CL:0000557 granulocyte monocyte progenitor cell primary cell Mus musculus DNA False 2016-03-30 ENCODE 1 1 48 single-ended 1916505943 Ross Hardison, PennState 70a699cc8cbf8cc8624fedc2276ea04c https://www.encodeproject.org/files/ENCFF942VKT/@@download/ENCFF942VKT.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/27/a2e7954b-a01e-44a3-b4f9-8ec578ce6a2b/ENCFF942VKT.fastq.gz inconsistent platforms inconsistent BiosampleType term, experiment not submitted to GEO ENCFF507XBJ fastq reads ENCSR377YDY ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF156CTY 1138662556 Bing Ren, UCSD 883b303a12f01a0a3a6f7728755adabe https://www.encodeproject.org/files/ENCFF507XBJ/@@download/ENCFF507XBJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/414d310b-a643-4eef-bbe7-948ea8181c55/ENCFF507XBJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF332GCF fastq reads ENCSR377YDY ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF672BYU 1419830279 Bing Ren, UCSD 1410073d69b8d8f34b02846ff6899270 https://www.encodeproject.org/files/ENCFF332GCF/@@download/ENCFF332GCF.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/68628ef7-4956-47cf-ad20-b00dc13aad53/ENCFF332GCF.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF672BYU fastq reads ENCSR377YDY ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF332GCF 1496631184 Bing Ren, UCSD 13d8e8613baab902973187cc3df415f8 https://www.encodeproject.org/files/ENCFF672BYU/@@download/ENCFF672BYU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/9e320c8f-568e-4360-bcbb-eabc85bebdc2/ENCFF672BYU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF156CTY fastq reads ENCSR377YDY ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF507XBJ 1072160985 Bing Ren, UCSD d0e6bc8c0aa1fb18c248bb04653a4b41 https://www.encodeproject.org/files/ENCFF156CTY/@@download/ENCFF156CTY.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/8524b4b7-f4c0-42ab-a3c0-250edca49dfd/ENCFF156CTY.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF110KAU fastq reads ENCSR551WBK ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF698GFS 1044443528 Bing Ren, UCSD 2eda1427864b6644e7d0b838094127bc https://www.encodeproject.org/files/ENCFF110KAU/@@download/ENCFF110KAU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/da9887a6-db7a-417a-ab87-f446c2e89718/ENCFF110KAU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF637TUL fastq reads ENCSR551WBK ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF283VKJ 783072776 Bing Ren, UCSD 1ff306779a80d4a8ff9f106cfe6a7b6f https://www.encodeproject.org/files/ENCFF637TUL/@@download/ENCFF637TUL.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/2f1eeb7f-8313-4099-9dfe-6d9a7aa719df/ENCFF637TUL.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF283VKJ fastq reads ENCSR551WBK ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF637TUL 831270591 Bing Ren, UCSD 26ee6860ffb46fe6dd40e9f6afde120a https://www.encodeproject.org/files/ENCFF283VKJ/@@download/ENCFF283VKJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/30871e19-54ef-49c1-a4b8-75c3a2d0253f/ENCFF283VKJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF698GFS fastq reads ENCSR551WBK ATAC-seq UBERON:0002101 limb tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF110KAU 972874225 Bing Ren, UCSD 6b4437f4df095cb07653e9279dd7862c https://www.encodeproject.org/files/ENCFF698GFS/@@download/ENCFF698GFS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/f76afa56-0828-4c41-8971-db5efb2112cd/ENCFF698GFS.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF726JSJ fastq reads ENCSR700QBR ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF461GHH 1006543878 Bing Ren, UCSD 059990d93e1369edaf054bc7cd978eab https://www.encodeproject.org/files/ENCFF726JSJ/@@download/ENCFF726JSJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/ccfc4f68-53b3-4226-b9ab-52ccfae99149/ENCFF726JSJ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF461GHH fastq reads ENCSR700QBR ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF726JSJ 1181798415 Bing Ren, UCSD ebbaf4690a6b2b0fa7240d271cfa88d0 https://www.encodeproject.org/files/ENCFF461GHH/@@download/ENCFF461GHH.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/496cb411-d5b8-4328-8a84-eeba2bf71aa0/ENCFF461GHH.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF945IYI fastq reads ENCSR700QBR ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF111RFS 1933256658 Bing Ren, UCSD 686a2c243a9b851fbae2b5142398bb1d https://www.encodeproject.org/files/ENCFF945IYI/@@download/ENCFF945IYI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/596eed54-dcc4-43fc-a2c5-1bb86379707c/ENCFF945IYI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF111RFS fastq reads ENCSR700QBR ATAC-seq UBERON:0001049 neural tube tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF945IYI 1752772653 Bing Ren, UCSD 56b6548606395e2b59da9dd9e9bcaaee https://www.encodeproject.org/files/ENCFF111RFS/@@download/ENCFF111RFS.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/1820f524-af44-460a-92bd-a2caa6630d04/ENCFF111RFS.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF076KIT fastq reads ENCSR787YJK ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 2 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 2 1 42 paired-ended 1 ENCFF334LWN 3124834556 Manuel Garber, UMass 30054daa07dbfda662a1788cc60b36b3 SRA:SRR5210438 https://www.encodeproject.org/files/ENCFF076KIT/@@download/ENCFF076KIT.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/65de23d1-1164-42a4-babb-598886c85767/ENCFF076KIT.fastq.gz ENCFF549XBF fastq reads ENCSR787YJK ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 2 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 2 ENCFF066BIR 1625632942 Manuel Garber, UMass a7009a59d896532a07cfcdb0c4b56d74 SRA:SRR5210439 https://www.encodeproject.org/files/ENCFF549XBF/@@download/ENCFF549XBF.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/e329fded-9755-4fea-a718-249443db26eb/ENCFF549XBF.fastq.gz ENCFF066BIR fastq reads ENCSR787YJK ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 2 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 1 ENCFF549XBF 1590756333 Manuel Garber, UMass df07dff3dd50577bca6ea22f33eee28d SRA:SRR5210439 https://www.encodeproject.org/files/ENCFF066BIR/@@download/ENCFF066BIR.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/21cc0e68-0205-49f8-b271-b30d8c3e7920/ENCFF066BIR.fastq.gz ENCFF334LWN fastq reads ENCSR787YJK ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 2 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 2 1 42 paired-ended 2 ENCFF076KIT 3317496037 Manuel Garber, UMass 081913e93a2bc803455be6dda9bfdcf1 SRA:SRR5210438 https://www.encodeproject.org/files/ENCFF334LWN/@@download/ENCFF334LWN.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/80080e31-257d-4dc8-9fae-71935002bb68/ENCFF334LWN.fastq.gz ENCFF890LGM fastq reads ENCSR810HQR ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF048MTG 1247007296 Bing Ren, UCSD e871ef5aabee1cff48125bf352b40009 https://www.encodeproject.org/files/ENCFF890LGM/@@download/ENCFF890LGM.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/0ec03d73-f629-4389-ba85-02e4e3869aa3/ENCFF890LGM.fastq.gz experiment not submitted to GEO ENCFF666DRJ fastq reads ENCSR810HQR ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF633MTW 1672784618 Bing Ren, UCSD 8934862e948aa5d4c502d24e9a6bb58d https://www.encodeproject.org/files/ENCFF666DRJ/@@download/ENCFF666DRJ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/5db33e65-f1e9-4c45-a191-daae3650b9e9/ENCFF666DRJ.fastq.gz experiment not submitted to GEO ENCFF048MTG fastq reads ENCSR810HQR ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF890LGM 1142765851 Bing Ren, UCSD 90142f6f08071c1b7d130c513320ab68 https://www.encodeproject.org/files/ENCFF048MTG/@@download/ENCFF048MTG.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/9b1181fc-6aac-4b70-8619-4faaf83cabfc/ENCFF048MTG.fastq.gz experiment not submitted to GEO ENCFF633MTW fastq reads ENCSR810HQR ATAC-seq UBERON:0001890 forebrain tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF666DRJ 1543275903 Bing Ren, UCSD 88a9b3d4a58206e2442d3c228de37c84 https://www.encodeproject.org/files/ENCFF633MTW/@@download/ENCFF633MTW.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/84616cf0-c490-4d2d-a1ab-92fc5554b16b/ENCFF633MTW.fastq.gz experiment not submitted to GEO ENCFF867QVP fastq reads ENCSR961SMM ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 1 ENCFF771QNR 1717547654 Bing Ren, UCSD 5b25e28a69ed225ef726b0c0d112825a https://www.encodeproject.org/files/ENCFF867QVP/@@download/ENCFF867QVP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/824b9d6d-0ace-4b07-bbb3-972349853bb6/ENCFF867QVP.fastq.gz experiment not submitted to GEO ENCFF775MXU fastq reads ENCSR961SMM ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 2 ENCFF674OOP 1966494111 Bing Ren, UCSD cb53e95a470041743db371c9adc3fbc1 https://www.encodeproject.org/files/ENCFF775MXU/@@download/ENCFF775MXU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/47eaa66f-8d3b-448e-9072-256a65657e32/ENCFF775MXU.fastq.gz experiment not submitted to GEO ENCFF674OOP fastq reads ENCSR961SMM ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 1 1 50 paired-ended 1 ENCFF775MXU 1789629629 Bing Ren, UCSD fcf26738b269483e303f62f3c1e9bf21 https://www.encodeproject.org/files/ENCFF674OOP/@@download/ENCFF674OOP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/369a30c0-3e54-4ddb-9297-f76007ae98e4/ENCFF674OOP.fastq.gz experiment not submitted to GEO ENCFF771QNR fastq reads ENCSR961SMM ATAC-seq UBERON:0000160 intestine tissue Mus musculus DNA ATAC_buffer False 2017-05-10 ENCODE 2 1 50 paired-ended 2 ENCFF867QVP 1862652579 Bing Ren, UCSD 1596c28333188a073db44c744b04dcdb https://www.encodeproject.org/files/ENCFF771QNR/@@download/ENCFF771QNR.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/abb9d34e-1bde-45b1-ae7c-df66c6bf1442/ENCFF771QNR.fastq.gz experiment not submitted to GEO ENCFF820PVO fastq reads ENCSR820ACB ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF279LMU 1444683875 Bing Ren, UCSD c0e9cdd24aec10d7fa142d52f41bf511 https://www.encodeproject.org/files/ENCFF820PVO/@@download/ENCFF820PVO.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/075929e1-efb6-46b3-8350-d2b6c15ba319/ENCFF820PVO.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF279LMU fastq reads ENCSR820ACB ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF820PVO 1284563812 Bing Ren, UCSD 2870ecd382dc50b8b36b3f9442056826 https://www.encodeproject.org/files/ENCFF279LMU/@@download/ENCFF279LMU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/28d8e8cb-03e8-46c9-b20c-9be93dc707c9/ENCFF279LMU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF823XXU fastq reads ENCSR820ACB ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF518FYP 1147678195 Bing Ren, UCSD 7f5d8174fbad01a42f1932e020026976 https://www.encodeproject.org/files/ENCFF823XXU/@@download/ENCFF823XXU.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/48d1c548-4af9-422c-91dc-a12bf140b670/ENCFF823XXU.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF518FYP fastq reads ENCSR820ACB ATAC-seq UBERON:0000948 heart tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF823XXU 1271515871 Bing Ren, UCSD 59dacd945fa6dd73cd33ed6569921802 https://www.encodeproject.org/files/ENCFF518FYP/@@download/ENCFF518FYP.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/eeefffa4-bc76-4858-8554-faee76a488ee/ENCFF518FYP.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF265RFZ fastq reads ENCSR031HDN ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 1 ENCFF547OQI 767968071 Bing Ren, UCSD b806ea62e5c15a994fa44c0400b463fd https://www.encodeproject.org/files/ENCFF265RFZ/@@download/ENCFF265RFZ.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/0fe3bb12-c756-48a6-8533-32c0c072dafb/ENCFF265RFZ.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF547OQI fastq reads ENCSR031HDN ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 1 1 50 paired-ended 2 ENCFF265RFZ 838589207 Bing Ren, UCSD 83d9ea78d6ddfac0e74b84b9c6316a67 https://www.encodeproject.org/files/ENCFF547OQI/@@download/ENCFF547OQI.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/e7440364-b011-4b9d-bcab-ab605f7864f9/ENCFF547OQI.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF492KHX fastq reads ENCSR031HDN ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 1 ENCFF459CPD 809361049 Bing Ren, UCSD 40640b0f62206c00223d7c6ec59fd97d https://www.encodeproject.org/files/ENCFF492KHX/@@download/ENCFF492KHX.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/fc671e5e-af6b-47d9-96fc-afe43455d1f9/ENCFF492KHX.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF459CPD fastq reads ENCSR031HDN ATAC-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus DNA ATAC_buffer False 2017-10-10 ENCODE 2 1 50 paired-ended 2 ENCFF492KHX 883210122 Bing Ren, UCSD 93835c42b1e59ee19dd33ffb270d4654 https://www.encodeproject.org/files/ENCFF459CPD/@@download/ENCFF459CPD.fastq.gz Illumina HiSeq 4000 released s3://encode-public/2017/03/14/240ad443-8401-4b1a-8837-3cc5dff852a7/ENCFF459CPD.fastq.gz mismatched file status, experiment not submitted to GEO ENCFF326MDD fastq reads ENCSR347RZI ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 4 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 1 ENCFF118DWS 872997379 Manuel Garber, UMass 20c0afa17e816bda9363de6a37106c6c SRA:SRR5210395 https://www.encodeproject.org/files/ENCFF326MDD/@@download/ENCFF326MDD.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/f0910f18-9655-4324-b5ed-0826cbe479e4/ENCFF326MDD.fastq.gz ENCFF118DWS fastq reads ENCSR347RZI ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 4 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 2 ENCFF326MDD 890792349 Manuel Garber, UMass db35f08b694d79a2b49a2a501e6bd3a3 SRA:SRR5210395 https://www.encodeproject.org/files/ENCFF118DWS/@@download/ENCFF118DWS.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/4c2dcafb-df7e-4fed-8d19-d01c7c5bc6bf/ENCFF118DWS.fastq.gz ENCFF301CCL fastq reads ENCSR347RZI ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 4 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 2 1 42 paired-ended 2 ENCFF382SNV 3520520677 Manuel Garber, UMass ac0dd5f1174eda0b70f8a46fc5251988 SRA:SRR5210396 https://www.encodeproject.org/files/ENCFF301CCL/@@download/ENCFF301CCL.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/13b62e52-6146-42fa-8ee6-35f1a5b528a8/ENCFF301CCL.fastq.gz ENCFF382SNV fastq reads ENCSR347RZI ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 4 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 2 1 42 paired-ended 1 ENCFF301CCL 3390372888 Manuel Garber, UMass 837d190a1eff28de8aea233f011064e7 SRA:SRR5210396 https://www.encodeproject.org/files/ENCFF382SNV/@@download/ENCFF382SNV.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/a5ae74ee-0049-4c96-a756-763786dce275/ENCFF382SNV.fastq.gz ENCFF881ZDO fastq reads ENCSR939XWM ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 1 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 2 ENCFF747IEL 1837305113 Manuel Garber, UMass 01e2e65967a56aa47c01ba0f071e4940 SRA:SRR5210451 https://www.encodeproject.org/files/ENCFF881ZDO/@@download/ENCFF881ZDO.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/85704197-8216-4140-8ff4-7f4a515a4015/ENCFF881ZDO.fastq.gz ENCFF921LJO fastq reads ENCSR939XWM ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 1 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 2 1 42 paired-ended 1 ENCFF629LUQ 1645511886 Manuel Garber, UMass 054a8cfb783e3b13870f391406d9b3f3 SRA:SRR5210452 https://www.encodeproject.org/files/ENCFF921LJO/@@download/ENCFF921LJO.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/2b238fe8-ad56-4f32-9f2e-802e879f1e51/ENCFF921LJO.fastq.gz ENCFF747IEL fastq reads ENCSR939XWM ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 1 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 1 1 42 paired-ended 1 ENCFF881ZDO 1795948252 Manuel Garber, UMass 9547a078c9de7b1467f6e958d6c32262 SRA:SRR5210451 https://www.encodeproject.org/files/ENCFF747IEL/@@download/ENCFF747IEL.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/ab15e574-8edf-46ae-bdeb-1ff55d29accb/ENCFF747IEL.fastq.gz ENCFF629LUQ fastq reads ENCSR939XWM ATAC-seq CL:0000451 dendritic cell in vitro differentiated cells Mus musculus lipopolysaccharide 100 ng/mL 1 hour DNA ATAC-seq (Greenleaf & Chang Lab protocol) False 2017-01-19 GGR 2 1 42 paired-ended 2 ENCFF921LJO 1713025501 Manuel Garber, UMass 0ce903d48f640e5b97728ec1f9138537 SRA:SRR5210452 https://www.encodeproject.org/files/ENCFF629LUQ/@@download/ENCFF629LUQ.fastq.gz Illumina NextSeq 500 released s3://encode-public/2017/01/18/91bd9b8c-beab-41b3-9232-db4d594146d8/ENCFF629LUQ.fastq.gz