<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!-- Begin document body -->
<fimo version="5.0.5" release="Mon Mar 18 20:12:19 2019 -0700">
  xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
  xsi:schemaLocation=  xmlns:fimo="http://noble.gs.washington.edu/schema/fimo"
>
<command-line>fimo --max-stored-scores 10000000000 --oc FIMO-CIS-BP-Nematostella_vectensis-Aiptasia_pallida-1.1 /oak/stanford/groups/akundaje/marinovg/programs/meme-5.0.5/motif_databases.12.18/CIS-BP/Nematostella_vectensis.meme /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/sequence/GCA_001417965.1_Aiptasia_genome_1.1_genomic.fa</command-line>
<settings>
<setting name="output directory">FIMO-CIS-BP-Nematostella_vectensis-Aiptasia_pallida-1.1</setting>
<setting name="MEME file name">/oak/stanford/groups/akundaje/marinovg/programs/meme-5.0.5/motif_databases.12.18/CIS-BP/Nematostella_vectensis.meme</setting>
<setting name="sequence file name">/oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.1/sequence/GCA_001417965.1_Aiptasia_genome_1.1_genomic.fa</setting>
<setting name="background file name">--nrdb--</setting>
<setting name="allow clobber">true</setting>
<setting name="compute q-values">true</setting>
<setting name="parse genomic coord.">false</setting>
<setting name="text only">false</setting>
<setting name="scan both strands">true</setting>
<setting name="output threshold">0.0001</setting>
<setting name="threshold type">p-value</setting>
<setting name="max stored scores">-2147483648</setting>
<setting name="pseudocount">0.1</setting>
<setting name="verbosity">2</setting>
</settings>
<sequence-data num-sequences="4312" num-residues="256132296" />
<alphabet name="DNA" like="dna">
<letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/>
<letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/>
<letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/>
<letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/>
<letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/>
<letter id="V" symbol="V" equals="ACG" name="Not T"/>
<letter id="H" symbol="H" equals="ACT" name="Not G"/>
<letter id="D" symbol="D" equals="AGT" name="Not C"/>
<letter id="B" symbol="B" equals="CGT" name="Not A"/>
<letter id="M" symbol="M" equals="AC" name="Amino"/>
<letter id="R" symbol="R" equals="AG" name="Purine"/>
<letter id="W" symbol="W" equals="AT" name="Weak"/>
<letter id="S" symbol="S" equals="CG" name="Strong"/>
<letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/>
<letter id="K" symbol="K" equals="GT" name="Keto"/>
</alphabet>
<motif name="M0106_1.02" alt="(e_gw.28.244.1)_(Mus_musculus)_(DBD_0.80)" width="9" best-possible-match="TTTTAATTA"/>
<motif name="M0115_1.02" alt="e_gw.4.260.1" width="10" best-possible-match="TGCTATAGCA"/>
<motif name="M0175_1.02" alt="(estExt_fgenesh1_pg.C_370042)_(Mus_musculus)_(DBD_0.73)" width="9" best-possible-match="TGCACGTGC"/>
<motif name="M0178_1.02" alt="(e_gw.81.71.1)_(Mus_musculus)_(DBD_0.73)" width="10" best-possible-match="AACAGCTGTT"/>
<motif name="M0181_1.02" alt="(fgenesh1_pg.scaffold_23000126)_(Mus_musculus)_(DBD_0.71)" width="9" best-possible-match="GATCACGTG"/>
<motif name="M0199_1.02" alt="(estExt_gwp.C_490010)_(Mus_musculus)_(DBD_0.61)" width="13" best-possible-match="TAACGACACGTGC"/>
<motif name="M0200_1.02" alt="(estExt_gwp.C_120110)_(Mus_musculus)_(DBD_0.61)" width="10" best-possible-match="GCCACGTGGC"/>
<motif name="M0221_1.02" alt="(e_gw.3.684.1)_(Mus_musculus)_(DBD_0.88)" width="9" best-possible-match="CCACGTGGT"/>
<motif name="M0240_1.02" alt="(estExt_fgenesh1_pg.C_380031)_(Caenorhabditis_elegans)_(DBD_0.76)" width="8" best-possible-match="TCACGTGA"/>
<motif name="M0300_1.02" alt="(gw.4616.1.1)_(Mus_musculus)_(DBD_0.58)" width="10" best-possible-match="AATGACGTCA"/>
<motif name="M0305_1.02" alt="(gw.123.37.1)_(Mus_musculus)_(DBD_0.77)" width="9" best-possible-match="GCCACGTGT"/>
<motif name="M0319_1.02" alt="(estExt_fgenesh1_pg.C_720021)_(Mus_musculus)_(DBD_0.95)" width="10" best-possible-match="TATGACGTAA"/>
<motif name="M0401_1.02" alt="(gw.53.82.1)_(Mus_musculus)_(DBD_0.90)" width="9" best-possible-match="GGGGGCGGA"/>
<motif name="M0405_1.02" alt="(estExt_fgenesh1_pm.C_5680002)_(Mus_musculus)_(DBD_0.96)" width="10" best-possible-match="TGGGCGTGGC"/>
<motif name="M0415_1.02" alt="(gw.13.277.1)_(Mus_musculus)_(DBD_0.74)" width="8" best-possible-match="ATAACGGT"/>
<motif name="M0422_1.02" alt="(e_gw.177.42.1)_(Mus_musculus)_(DBD_0.74)" width="10" best-possible-match="CCGGGGGGTC"/>
<motif name="M0439_1.02" alt="(e_gw.177.55.1)_(Mus_musculus)_(DBD_0.73)" width="10" best-possible-match="CACAGCGGGG"/>
<motif name="M0641_1.02" alt="(e_gw.74.213.1)_(Drosophila_melanogaster)_(DBD_0.89)" width="10" best-possible-match="TGTATCAATT"/>
<motif name="M0690_1.02" alt="(gw.138.35.1)_(Mus_musculus)_(DBD_0.88)" width="10" best-possible-match="GACCGGAAGT"/>
<motif name="M0703_1.02" alt="(e_gw.39.200.1)_(Mus_musculus)_(DBD_0.62)" width="10" best-possible-match="AACCGGAAGT"/>
<motif name="M0711_1.02" alt="(gw.30.231.1)_(Tetraodon_nigroviridis)_(DBD_0.66)" width="8" best-possible-match="CCGGAAGT"/>
<motif name="M0722_1.02" alt="(e_gw.167.65.1)_(Mus_musculus)_(DBD_0.72)" width="8" best-possible-match="GTAAACAA"/>
<motif name="M0723_1.02" alt="(e_gw.18.176.1)_(Mus_musculus)_(DBD_0.88)" width="10" best-possible-match="ATGTAAACAA"/>
<motif name="M0728_1.02" alt="(gw.34.211.1)_(Mus_musculus)_(DBD_0.77)" width="12" best-possible-match="AATAAACAAACA"/>
<motif name="M0736_1.02" alt="(e_gw.151.42.1)_(Mus_musculus)_(DBD_0.89)" width="8" best-possible-match="GTAAACAA"/>
<motif name="M0737_1.02" alt="(estExt_GenewiseH_1.C_990063)_(Mus_musculus)_(DBD_0.90)" width="10" best-possible-match="TATGTAAACA"/>
<motif name="M0738_1.02" alt="(e_gw.307.43.1)_(Oryzias_latipes)_(DBD_0.53)" width="8" best-possible-match="GTAAACAA"/>
<motif name="M0747_1.02" alt="(gw.11.491.1)_(Mus_musculus)_(DBD_0.71)" width="10" best-possible-match="AATGTAAACA"/>
<motif name="M0757_1.02" alt="(gw.33.191.1)_(Strongylocentrotus_purpuratus)_(DBD_0.51)" width="10" best-possible-match="ATGTAAACAA"/>
<motif name="M0817_1.02" alt="(e_gw.278.27.1)_(Drosophila_melanogaster)_(DBD_0.56)" width="8" best-possible-match="ATGCGGGT"/>
<motif name="M0892_1.02" alt="(gw.6.280.1)_(Homo_sapiens)_(DBD_0.81)" width="10" best-possible-match="CCTAATTACC"/>
<motif name="M0907_1.02" alt="(e_gw.248.49.1)_(Mus_musculus)_(DBD_0.82)" width="9" best-possible-match="TTAATTACC"/>
<motif name="M0911_1.02" alt="(e_gw.61.34.1)_(Mus_musculus)_(DBD_0.82)" width="10" best-possible-match="CTAATTGCTT"/>
<motif name="M0942_1.02" alt="(gw.64.87.1)_(Mus_musculus)_(DBD_0.95)" width="8" best-possible-match="TTGTAATT"/>
<motif name="M0943_1.02" alt="(fgenesh1_pg.scaffold_62000087)_(Mus_musculus)_(DBD_0.93)" width="8" best-possible-match="GCTAATTA"/>
<motif name="M0952_1.02" alt="(e_gw.229.49.1)_(Mus_musculus)_(DBD_0.93)" width="8" best-possible-match="TGATACCC"/>
<motif name="M0954_1.02" alt="(estExt_GenewiseH_1.C_620202)_(Mus_musculus)_(DBD_0.89)" width="9" best-possible-match="GCTAATTGG"/>
<motif name="M0970_1.02" alt="(gw.116.69.1)_(Mus_musculus)_(DBD_0.77)" width="9" best-possible-match="TTAATCCCC"/>
<motif name="M0971_1.02" alt="(e_gw.159.76.1)_(Mus_musculus)_(DBD_0.79)" width="8" best-possible-match="ATAATTGG"/>
<motif name="M0972_1.02" alt="(gw.191.135.1)_(Mus_musculus)_(DBD_0.74)" width="8" best-possible-match="TTAATTAA"/>
<motif name="M0975_1.02" alt="(e_gw.97.29.1)_(Mus_musculus)_(DBD_0.89)" width="9" best-possible-match="TAATTAATT"/>
<motif name="M1000_1.02" alt="(e_gw.365.33.1)_(Mus_musculus)_(DBD_0.91)" width="8" best-possible-match="TTAATTAG"/>
<motif name="M1001_1.02" alt="(gw.102.40.1)_(Mus_musculus)_(DBD_0.85)" width="10" best-possible-match="ACCTGTCAAT"/>
<motif name="M1015_1.02" alt="(e_gw.40.28.1)_(Mus_musculus)_(DBD_0.81)" width="7" best-possible-match="TTAATTA"/>
<motif name="M1016_1.02" alt="(e_gw.286.29.1)_(Mus_musculus)_(DBD_0.98)" width="7" best-possible-match="GTGATAC"/>
<motif name="M1018_1.02" alt="(e_gw.58.230.1)_(Mus_musculus)_(DBD_0.81)" width="7" best-possible-match="TAATTAA"/>
<motif name="M1020_1.02" alt="(fgenesh1_pm.scaffold_110000004)_(Mus_musculus)_(DBD_0.88)" width="8" best-possible-match="TTAATTGG"/>
<motif name="M1060_1.02" alt="(gw.243.78.1)_(Mus_musculus)_(DBD_0.77)" width="10" best-possible-match="AAGCACTTAA"/>
<motif name="M1083_1.02" alt="(e_gw.34.4.1)_(Tetraodon_nigroviridis)_(DBD_0.72)" width="9" best-possible-match="ATTAATTAG"/>
<motif name="M1086_1.02" alt="(e_gw.243.57.1)_(Caenorhabditis_elegans)_(DBD_0.81)" width="8" best-possible-match="GCACTTAA"/>
<motif name="M1096_1.02" alt="(estExt_gwp.C_530110)_(Drosophila_melanogaster)_(DBD_0.89)" width="8" best-possible-match="TTAATCCC"/>
<motif name="M1097_1.02" alt="(estExt_fgenesh1_pg.C_2280026)_(Drosophila_melanogaster)_(DBD_0.91)" width="10" best-possible-match="ATTAATTAAT"/>
<motif name="M1110_1.02" alt="(gw.12.267.1)_(Caenorhabditis_elegans)_(DBD_0.75)" width="10" best-possible-match="GGGCAATAGA"/>
<motif name="M1125_1.02" alt="(fgenesh1_pg.scaffold_6000006)_(Mus_musculus)_(DBD_0.96)" width="10" best-possible-match="GCTAATTGGT"/>
<motif name="M1163_1.02" alt="(e_gw.464.8.1)_(PBM_CONSTRUCTS)_(DBD_0.98)" width="9" best-possible-match="ATTAATTAC"/>
<motif name="M1177_1.02" alt="(e_gw.61.4.1)_(Acropora_formosa)_(DBD_0.91)" width="11" best-possible-match="AAGTAATTACT"/>
<motif name="M1185_1.02" alt="K50-6" width="10" best-possible-match="CTTAATCCTA"/>
<motif name="M1186_1.02" alt="NVHD076-ANTP" width="9" best-possible-match="ATAATCGAT"/>
<motif name="M1187_1.02" alt="NK-like_2" width="9" best-possible-match="TTAATTGGC"/>
<motif name="M1188_1.02" alt="MSXB" width="9" best-possible-match="GCCAATAAA"/>
<motif name="M1189_1.02" alt="PaxD4" width="10" best-possible-match="ATTAATTAAT"/>
<motif name="M1190_1.02" alt="NK-like_21" width="10" best-possible-match="GCCCAATAAA"/>
<motif name="M1191_1.02" alt="NOT-like_D" width="9" best-possible-match="TTAATTAAC"/>
<motif name="M1192_1.02" alt="NK-like_4" width="8" best-possible-match="AATCGATC"/>
<motif name="M1193_1.02" alt="SHOX-like" width="8" best-possible-match="TTAATTGG"/>
<motif name="M1194_1.02" alt="LBX" width="8" best-possible-match="CTAATTAA"/>
<motif name="M1197_1.02" alt="NK-like_13" width="10" best-possible-match="AAGCACTTGA"/>
<motif name="M1198_1.02" alt="HOXC" width="8" best-possible-match="TTAATTAT"/>
<motif name="M1199_1.02" alt="NOT-like_E" width="10" best-possible-match="TTAATTAGCC"/>
<motif name="M1200_1.02" alt="LHX3-like" width="12" best-possible-match="TACTAATTAATT"/>
<motif name="M1201_1.02" alt="Q50-5" width="8" best-possible-match="CTAATTAA"/>
<motif name="M1202_1.02" alt="NK-like_10" width="8" best-possible-match="TAATTGGT"/>
<motif name="M1203_1.02" alt="NK-like_5" width="10" best-possible-match="GTAATGGGCT"/>
<motif name="M1204_1.02" alt="NK-like_3" width="9" best-possible-match="CTTAATTGG"/>
<motif name="M1205_1.02" alt="HOXF" width="8" best-possible-match="CTAATTAC"/>
<motif name="M1206_1.02" alt="DMBXd-paired" width="8" best-possible-match="TTAAGAAG"/>
<motif name="M1207_1.02" alt="PREP/MEIS-like" width="8" best-possible-match="ACATGTCA"/>
<motif name="M1494_1.02" alt="(e_gw.92.1.1)_(Acropora_millepora)_(DBD_0.80)" width="9" best-possible-match="GTGACCTCT"/>
<motif name="M1528_1.02" alt="(e_gw.194.31.1)_(Mus_musculus)_(DBD_0.66)" width="10" best-possible-match="CCATGGCAAC"/>
<motif name="M1529_1.02" alt="(gw.71.70.1)_(Mus_musculus)_(DBD_0.61)" width="10" best-possible-match="CCATAGCAAC"/>
<motif name="M1628_1.02" alt="(fgenesh1_pg.scaffold_203000032)_(Mus_musculus)_(DBD_0.75)" width="11" best-possible-match="AGGTGTGAAGA"/>
<motif name="M1630_1.02" alt="(e_gw.65.117.1)_(Mus_musculus)_(DBD_0.71)" width="10" best-possible-match="AAGGTGTCAA"/>
<motif name="M1631_1.02" alt="(e_gw.80.47.1)_(Mus_musculus)_(DBD_0.64)" width="10" best-possible-match="AAGGTGTGAA"/>
<motif name="M1640_1.02" alt="(estExt_gwp.C_650150)_(Strongylocentrotus_purpuratus)_(DBD_0.63)" width="8" best-possible-match="TGACACCT"/>
<motif name="M1837_1.02" alt="(e_gw.262.50.1)_(Mus_musculus)_(DBD_0.78)" width="11" best-possible-match="AAACCACAGAC"/>
<motif name="M1848_1.02" alt="(estExt_fgenesh1_pg.C_950002)_(Homo_sapiens)_(DBD_0.80)" width="19" best-possible-match="GAGGGCAGCCAAGCGTGAC"/>
<motif name="M1863_1.02" alt="(gw.32.224.1)_(Homo_sapiens)_(DBD_0.66)" width="8" best-possible-match="GTAAACAT"/>
<motif name="M1869_1.02" alt="(fgenesh1_pg.scaffold_2000231)_(Homo_sapiens)_(DBD_0.87)" width="8" best-possible-match="AGATAAGA"/>
<motif name="M1884_1.02" alt="(estExt_gwp.C_1400035)_(Homo_sapiens)_(DBD_0.92)" width="15" best-possible-match="AGCTAAAAATAGCAT"/>
<motif name="M1890_1.02" alt="(e_gw.6.529.1)_(Homo_sapiens)_(DBD_0.84)" width="18" best-possible-match="AGAGTGCTGATTGGTCCA"/>
<motif name="M1919_1.02" alt="(e_gw.156.100.1)_(Homo_sapiens)_(DBD_0.97)" width="12" best-possible-match="CAAGATGGCGGC"/>
<motif name="M1927_1.02" alt="(gw.6.240.1)_(Mus_musculus)_(DBD_0.60)" width="8" best-possible-match="GCCACGTG"/>
<motif name="M1971_1.02" alt="(gw.4.400.1)_(Homo_sapiens)_(DBD_0.87)" width="14" best-possible-match="GGCGGGGGCGGGGG"/>
<motif name="M1981_1.02" alt="(gw.15.164.1)_(Drosophila_melanogaster)_(DBD_0.77)" width="7" best-possible-match="TTAATTA"/>
<motif name="M1984_1.02" alt="(gw.315.47.1)_(Drosophila_melanogaster)_(DBD_0.74)" width="7" best-possible-match="TTAATTG"/>
<motif name="M1986_1.02" alt="(e_gw.4.413.1)_(Drosophila_melanogaster)_(DBD_0.84)" width="7" best-possible-match="TTAATTA"/>
<motif name="M1995_1.02" alt="(e_gw.27.243.1)_(Drosophila_melanogaster)_(DBD_0.72)" width="7" best-possible-match="TTAATGA"/>
<motif name="M2005_1.02" alt="(gw.464.14.1)_(Drosophila_melanogaster)_(DBD_0.86)" width="7" best-possible-match="TTAATTG"/>
<motif name="M2013_1.02" alt="(e_gw.14289.2.1)_(Drosophila_melanogaster)_(DBD_0.73)" width="6" best-possible-match="TGATAC"/>
<motif name="M2016_1.02" alt="(e_gw.75.81.1)_(Drosophila_melanogaster)_(DBD_0.74)" width="6" best-possible-match="CTGTCA"/>
<motif name="M2034_1.02" alt="(estExt_gwp.C_620200)_(Drosophila_melanogaster)_(DBD_0.95)" width="7" best-possible-match="TTAATTA"/>
<motif name="M2036_1.02" alt="(e_gw.27.3.1)_(Drosophila_melanogaster)_(DBD_0.82)" width="7" best-possible-match="CTAATTA"/>
<motif name="M2049_1.02" alt="(gw.61.199.1)_(Drosophila_melanogaster)_(DBD_0.82)" width="7" best-possible-match="CTAATTA"/>
<motif name="M2060_1.02" alt="(e_gw.243.50.1)_(Drosophila_melanogaster)_(DBD_0.89)" width="9" best-possible-match="TTTCAAGTG"/>
<motif name="M2061_1.02" alt="(gw.44.212.1)_(Drosophila_melanogaster)_(DBD_0.75)" width="6" best-possible-match="TGCATA"/>
<motif name="M2069_1.02" alt="(estExt_GenewiseH_1.C_2430020)_(Caenorhabditis_elegans)_(DBD_0.79)" width="11" best-possible-match="ACCACTTGAAA"/>
<motif name="M2259_1.02" alt="(e_gw.177.70.1)_(Drosophila_melanogaster)_(DBD_0.78)" width="12" best-possible-match="CAGCGGGGGGTC"/>
<motif name="M2275_1.02" alt="(gw.23.355.1)_(Homo_sapiens)_(DBD_0.57)" width="13" best-possible-match="GAACCAGGAAGTG"/>
<motif name="M2283_1.02" alt="(estExt_gwp.C_170331)_(Homo_sapiens)_(DBD_0.82)" width="15" best-possible-match="CAAAAGTAAACAAAG"/>
<motif name="M2285_1.02" alt="(estExt_GenewiseH_1.C_400258)_(Mus_musculus)_(DBD_0.77)" width="11" best-possible-match="TGCTGTGATTT"/>
<motif name="M2291_1.02" alt="(estExt_fgenesh1_pg.C_60220)_(Homo_sapiens)_(DBD_0.64)" width="11" best-possible-match="GGATGACTCAT"/>
<motif name="M2292_1.02" alt="(e_gw.228.39.1)_(Homo_sapiens)_(DBD_0.56)" width="11" best-possible-match="GGTGACTCATC"/>
<motif name="M2302_1.02" alt="(fgenesh1_pg.scaffold_87000064)_(Mus_musculus)_(DBD_0.86)" width="11" best-possible-match="AGCCACTCAAG"/>
<motif name="M2311_1.02" alt="(e_gw.4859.1.1)_(Mus_musculus)_(DBD_0.70)" width="11" best-possible-match="TCTGACCTTTG"/>
<motif name="M2387_1.02" alt="(e_gw.38.6.1)_(Homo_sapiens)_(DBD_0.65)" width="10" best-possible-match="GTGGGGTGAT"/>
<motif name="M4466_1.02" alt="(e_gw.186.100.1)_(Homo_sapiens)_(DBD_0.76)" width="15" best-possible-match="ATGCCAAAAATAGAA"/>
<motif name="M4473_1.02" alt="(fgenesh1_pm.scaffold_48000004)_(Homo_sapiens)_(DBD_0.92)" width="15" best-possible-match="GCCGGCCAATCAGAG"/>
<motif name="M4481_1.02" alt="(e_gw.2616.3.1)_(Homo_sapiens)_(DBD_0.70)" width="15" best-possible-match="GGTCACGTGGCCCGG"/>
<motif name="M4511_1.02" alt="(e_gw.61.3.1)_(Homo_sapiens)_(DBD_0.70)" width="8" best-possible-match="TGACCTCT"/>
<motif name="M4515_1.02" alt="(e_gw.102.51.1)_(Homo_sapiens)_(DBD_0.70)" width="16" best-possible-match="GGGTCACGTGACCGCG"/>
<motif name="M4541_1.02" alt="(e_gw.22.105.1)_(Homo_sapiens)_(DBD_0.56)" width="15" best-possible-match="TGATGACTCATTCTT"/>
<motif name="M4567_1.02" alt="(estExt_gwp.C_580130)_(Homo_sapiens)_(DBD_0.94)" width="15" best-possible-match="GCAAAGTAAACATAG"/>
<motif name="M4568_1.02" alt="(e_gw.47.106.1)_(Homo_sapiens)_(DBD_0.82)" width="15" best-possible-match="CGGAACCGGAAGTGG"/>
<motif name="M4577_1.02" alt="(estExt_gwp.C_520012)_(Homo_sapiens)_(DBD_0.94)" width="18" best-possible-match="CATGCCCATATAAGGCAA"/>
<motif name="M4598_1.02" alt="(estExt_fgenesh1_pm.C_1870003)_(Homo_sapiens)_(DBD_0.99)" width="15" best-possible-match="GGCGGGAAATTGGAA"/>
<motif name="M4608_1.02" alt="(e_gw.41.120.1)_(Homo_sapiens)_(DBD_0.66)" width="11" best-possible-match="GATGACTCATC"/>
<motif name="M4618_1.02" alt="(gw.47.107.1)_(Homo_sapiens)_(DBD_0.70)" width="21" best-possible-match="CCTGCTGGGAGTTGTAGTCCC"/>
<motif name="M4688_1.02" alt="(gw.55.84.1)_(Homo_sapiens)_(DBD_0.52)" width="10" best-possible-match="ACCCGGAAGT"/>
<motif name="M4698_1.02" alt="(e_gw.21.77.1)_(Homo_sapiens)_(DBD_0.84)" width="15" best-possible-match="CTGGACTTTGGACTC"/>
<motif name="M4702_1.02" alt="(estExt_fgenesh1_pg.C_600043)_(Homo_sapiens)_(DBD_0.80)" width="8" best-possible-match="TGACCTTT"/>
<motif name="M4708_1.02" alt="(fgenesh1_pg.scaffold_42000090)_(Homo_sapiens)_(DBD_0.93)" width="10" best-possible-match="TATGCAAATA"/>
<motif name="M4817_1.02" alt="(e_gw.89.94.1)_(Drosophila_melanogaster)_(DBD_0.83)" width="9" best-possible-match="CAACAGGTG"/>
<motif name="M4833_1.02" alt="(gw.119.7.1)_(Drosophila_melanogaster)_(DBD_0.74)" width="7" best-possible-match="TTAATTA"/>
<motif name="M4850_1.02" alt="(gw.53.120.1)_(Drosophila_melanogaster)_(DBD_0.72)" width="21" best-possible-match="TGTTGTGTCCGTGCCATCTGG"/>
<motif name="M4922_1.02" alt="(gw.49.191.1)_(Drosophila_melanogaster)_(DBD_0.69)" width="11" best-possible-match="GGCACGTGCCA"/>
<motif name="M4926_1.02" alt="(e_gw.122.1.1)_(Drosophila_melanogaster)_(DBD_0.81)" width="10" best-possible-match="TTTGACTTTT"/>
<motif name="M4951_1.02" alt="(e_gw.92.131.1)_(Drosophila_melanogaster)_(DBD_0.90)" width="8" best-possible-match="CCGGAAAT"/>
<motif name="M4966_1.02" alt="(e_gw.44.68.1)_(Drosophila_melanogaster)_(DBD_0.87)" width="11" best-possible-match="TGACAGGTGTT"/>
<motif name="M5006_1.02" alt="(gw.58.85.1)_(Drosophila_melanogaster)_(DBD_0.77)" width="17" best-possible-match="CAGCCGACACGTGCCCC"/>
<motif name="M5097_1.02" alt="(e_gw.1969.3.1)_(Drosophila_melanogaster)_(DBD_0.82)" width="10" best-possible-match="GGGCGTTGCC"/>
<motif name="M5116_1.02" alt="(e_gw.168.51.1)_(Drosophila_melanogaster)_(DBD_0.62)" width="9" best-possible-match="ACCACCTGT"/>
<motif name="M5133_1.02" alt="(gw.177.53.1)_(Drosophila_melanogaster)_(DBD_0.83)" width="12" best-possible-match="CAGCGGGGGGTC"/>
<motif name="M5160_1.02" alt="(e_gw.52.186.1)_(Drosophila_melanogaster)_(DBD_0.74)" width="8" best-possible-match="ACTAATTA"/>
<motif name="M5161_1.02" alt="(e_gw.2.564.1)_(Drosophila_melanogaster)_(DBD_0.70)" width="7" best-possible-match="TTAATTA"/>
<motif name="M5191_1.02" alt="(e_gw.439.30.1)_(Drosophila_melanogaster)_(DBD_0.76)" width="9" best-possible-match="ATTTGATAC"/>
<motif name="M5231_1.02" alt="(fgenesh1_pg.scaffold_5531000001)_(Drosophila_melanogaster)_(DBD_0.87)" width="9" best-possible-match="GTCACGTGA"/>
<motif name="M5234_1.02" alt="(e_gw.44.108.1)_(Drosophila_melanogaster)_(DBD_0.72)" width="10" best-possible-match="GGTCACGTAC"/>
<motif name="M5261_1.02" alt="(gw.58.76.1)_(Drosophila_melanogaster)_(DBD_0.82)" width="8" best-possible-match="CTTAATTA"/>
<motif name="M5323_1.02" alt="(estExt_fgenesh1_pg.C_990043)_(Homo_sapiens)_(DBD_0.60)" width="14" best-possible-match="TGATGACGTCATCG"/>
<motif name="M5446_1.02" alt="(e_gw.99.103.1)_(Homo_sapiens)_(DBD_0.68)" width="7" best-possible-match="GTAAACA"/>
<motif name="M5520_1.02" alt="(e_gw.6.279.1)_(Homo_sapiens)_(DBD_0.95)" width="11" best-possible-match="TGTTAATTGCT"/>
<motif name="M5591_1.02" alt="(gw.329.32.1)_(Homo_sapiens)_(DBD_0.75)" width="18" best-possible-match="CAAAAAGGGGCGTGGCAT"/>
<motif name="M5624_1.02" alt="(e_gw.248.6.1)_(Homo_sapiens)_(DBD_0.88)" width="10" best-possible-match="AGTAATTAAC"/>
<motif name="M5660_1.02" alt="(e_gw.30.149.1)_(Homo_sapiens)_(DBD_0.73)" width="15" best-possible-match="TTGGCACGGTGCCAA"/>
<motif name="M5740_1.02" alt="(estExt_gwp.C_160254)_(Homo_sapiens)_(DBD_0.87)" width="14" best-possible-match="ATGAATAATTAATG"/>
<motif name="M5856_1.02" alt="(e_gw.53.52.1)_(Homo_sapiens)_(DBD_0.96)" width="12" best-possible-match="AGTGGGCGTGGC"/>
<motif name="M5880_1.02" alt="(e_gw.19.61.1)_(Homo_sapiens)_(DBD_0.73)" width="19" best-possible-match="AGGTGTGAAATTCACACCT"/>
<motif name="M5883_1.02" alt="(e_gw.146.31.1)_(Homo_sapiens)_(DBD_0.77)" width="16" best-possible-match="TCACACCTTCACACCT"/>
<motif name="M6076_1.02" alt="(e_gw.43.110.1)_(Mus_musculus)_(DBD_0.83)" width="15" best-possible-match="CGTTGCCTAGCAACG"/>
<motif name="M6120_1.02" alt="(e_gw.138.41.1)_(Mus_musculus)_(DBD_0.78)" width="11" best-possible-match="CTGGGTGGTCC"/>
<motif name="M6139_1.02" alt="(e_gw.274.25.1)_(Homo_sapiens)_(DBD_0.74)" width="9" best-possible-match="GCACGCAAC"/>
<motif name="M6151_1.02" alt="(e_gw.140.42.1)_(Homo_sapiens)_(DBD_0.81)" width="8" best-possible-match="TCACGTGC"/>
<motif name="M6164_1.02" alt="(gw.137.1.1)_(Homo_sapiens)_(DBD_0.80)" width="25" best-possible-match="ACATAGTGACACCTAGGTGTGAAAT"/>
<motif name="M6166_1.02" alt="(estExt_gwp.C_1220079)_(Homo_sapiens)_(DBD_0.96)" width="15" best-possible-match="ATTATGTTAAATCAC"/>
<motif name="M6172_1.02" alt="(e_gw.124.128.1)_(Homo_sapiens)_(DBD_0.59)" width="12" best-possible-match="AAGATTGCGCAA"/>
<motif name="M6173_1.02" alt="(e_gw.74.6.1)_(Homo_sapiens)_(DBD_0.59)" width="13" best-possible-match="CAGATTGCAAAAT"/>
<motif name="M6176_1.02" alt="(estExt_GenewiseH_1.C_1360001)_(Homo_sapiens)_(DBD_0.93)" width="12" best-possible-match="TGACCTTTGACC"/>
<motif name="M6188_1.02" alt="(e_gw.20.135.1)_(Homo_sapiens)_(DBD_0.88)" width="8" best-possible-match="ATAATTAT"/>
<motif name="M6204_1.02" alt="(e_gw.4.406.1)_(Homo_sapiens)_(DBD_0.57)" width="15" best-possible-match="TAGCAGGAAGTGAGT"/>
<motif name="M6208_1.02" alt="(e_gw.30.233.1)_(Homo_sapiens)_(DBD_0.52)" width="12" best-possible-match="CCCAGGAAGTGC"/>
<motif name="M6235_1.02" alt="(gw.56.150.1)_(Homo_sapiens)_(DBD_0.68)" width="15" best-possible-match="CTTAAGTAAACAATG"/>
<motif name="M6236_1.02" alt="(estExt_GenewiseH_1.C_2450043)_(Homo_sapiens)_(DBD_0.88)" width="15" best-possible-match="TCTGGCAAAACAAAC"/>
<motif name="M6237_1.02" alt="(e_gw.32.228.1)_(Homo_sapiens)_(DBD_0.92)" width="9" best-possible-match="AAACAAACA"/>
<motif name="M6238_1.02" alt="(gw.124.41.1)_(Homo_sapiens)_(DBD_0.40)" width="11" best-possible-match="AAAATAAACAT"/>
<motif name="M6250_1.02" alt="(fgenesh1_pg.scaffold_25000096)_(Homo_sapiens)_(DBD_0.69)" width="12" best-possible-match="AAATAAACAATT"/>
<motif name="M6263_1.02" alt="(e_gw.111.29.1)_(Homo_sapiens)_(DBD_0.71)" width="10" best-possible-match="GCTGTGATTT"/>
<motif name="M6267_1.02" alt="(gw.32.191.1)_(Homo_sapiens)_(DBD_0.77)" width="10" best-possible-match="GTGGGGGGTA"/>
<motif name="M6268_1.02" alt="(e_gw.80.307.1)_(Homo_sapiens)_(DBD_0.72)" width="12" best-possible-match="AATGCCAGACGC"/>
<motif name="M6271_1.02" alt="(fgenesh1_pg.scaffold_33000076)_(Homo_sapiens)_(DBD_0.76)" width="13" best-possible-match="GGGCTCGTGGCGG"/>
<motif name="M6282_1.02" alt="(e_gw.13.217.1)_(Homo_sapiens)_(DBD_0.79)" width="14" best-possible-match="GTTAATCATTAACC"/>
<motif name="M6299_1.02" alt="(e_gw.26.228.1)_(Homo_sapiens)_(DBD_0.72)" width="15" best-possible-match="AAAGTAATAAATCAT"/>
<motif name="M6315_1.02" alt="(estExt_gwp.C_240293)_(Homo_sapiens)_(DBD_0.96)" width="7" best-possible-match="GTTAATG"/>
<motif name="M6321_1.02" alt="(e_gw.6.267.1)_(Homo_sapiens)_(DBD_0.71)" width="17" best-possible-match="GGCGGGGAGGTGGGGGC"/>
<motif name="M6325_1.02" alt="(e_gw.85.179.1)_(Homo_sapiens)_(DBD_0.85)" width="8" best-possible-match="GGGGGCGG"/>
<motif name="M6328_1.02" alt="(e_gw.48.23.1)_(Homo_sapiens)_(DBD_0.91)" width="13" best-possible-match="CACTTTTAATTAG"/>
<motif name="M6344_1.02" alt="(e_gw.164.10.1)_(Homo_sapiens)_(DBD_0.91)" width="13" best-possible-match="TGACAGCTGTCAA"/>
<motif name="M6347_1.02" alt="(e_gw.6.245.1)_(Homo_sapiens)_(DBD_0.98)" width="7" best-possible-match="TAATTGT"/>
<motif name="M6379_1.02" alt="(fgenesh1_pg.scaffold_87000063)_(Homo_sapiens)_(DBD_0.93)" width="11" best-possible-match="AGTTAAGTGGA"/>
<motif name="M6400_1.02" alt="(e_gw.183.52.1)_(Homo_sapiens)_(DBD_0.89)" width="8" best-possible-match="CTAATCCT"/>
<motif name="M6417_1.02" alt="(e_gw.114.66.1)_(Homo_sapiens)_(DBD_0.77)" width="13" best-possible-match="ATATATTCATGAG"/>
<motif name="M6418_1.02" alt="(e_gw.2.561.1)_(Homo_sapiens)_(DBD_0.86)" width="10" best-possible-match="TTTAATCCCA"/>
<motif name="M6426_1.02" alt="(e_gw.262.37.1)_(Homo_sapiens)_(DBD_0.90)" width="10" best-possible-match="CATAAATAAT"/>
<motif name="M6463_1.02" alt="(fgenesh1_pm.scaffold_16000018)_(Homo_sapiens)_(DBD_0.87)" width="12" best-possible-match="AGCCTGTCTGCC"/>
<motif name="M6465_1.02" alt="(estExt_gwp.C_980104)_(Homo_sapiens)_(DBD_0.83)" width="10" best-possible-match="GTGTCTGGCC"/>
<motif name="M6466_1.02" alt="(estExt_fgenesh1_pg.C_4010004)_(Homo_sapiens)_(DBD_0.92)" width="9" best-possible-match="TGTCTGGCC"/>
<motif name="M6500_1.02" alt="(fgenesh1_pg.scaffold_23000024)_(Homo_sapiens)_(DBD_0.77)" width="12" best-possible-match="GACCATCTGTTC"/>
<motif name="M6501_1.02" alt="(e_gw.23.7.1)_(Homo_sapiens)_(DBD_0.79)" width="25" best-possible-match="TCCAGTGGTTGGGCGACCATCTGTT"/>
<motif name="M6513_1.02" alt="(e_gw.109.84.1)_(Homo_sapiens)_(DBD_0.85)" width="11" best-possible-match="GCCAGCTGCGG"/>
<motif name="M6515_1.02" alt="(e_gw.130.59.1)_(Homo_sapiens)_(DBD_0.77)" width="14" best-possible-match="AAATGGCGGGAAAC"/>
<motif name="M6527_1.02" alt="(estExt_fgenesh1_pm.C_530001)_(Homo_sapiens)_(DBD_0.85)" width="10" best-possible-match="ACCCAGGTGG"/>
<motif name="M6534_1.02" alt="(gw.106.111.1)_(Homo_sapiens)_(DBD_0.86)" width="11" best-possible-match="TTAGCTAATTA"/>
<motif name="M6536_1.02" alt="(fgenesh1_pg.scaffold_135000030)_(Homo_sapiens)_(DBD_0.62)" width="12" best-possible-match="GACGTGTCATTA"/>
<motif name="M6537_1.02" alt="(e_gw.71.100.1)_(Homo_sapiens)_(DBD_0.82)" width="11" best-possible-match="GGGGATTGGCC"/>
<background source="--nrdb--">
<value letter="A">0.275</value>
<value letter="C">0.225</value>
<value letter="G">0.225</value>
<value letter="T">0.275</value>
</background>
<cisml-file>cisml.xml</cisml-file>
</fimo>
