<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!-- Begin document body -->
<fimo version="5.0.5" release="Mon Mar 18 20:12:19 2019 -0700">
  xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
  xsi:schemaLocation=  xmlns:fimo="http://noble.gs.washington.edu/schema/fimo"
>
<command-line>fimo --max-stored-scores 10000000000 --oc FIMO-CIS-BP-Drosophila_melanogaster-Aiptasia_pallida-1.0 /oak/stanford/groups/akundaje/marinovg/programs/meme-5.0.5/motif_databases.12.18/CIS-BP/Drosophila_melanogaster.meme /oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.0/sequence/aiptasia_genome.scaffolds.fa</command-line>
<settings>
<setting name="output directory">FIMO-CIS-BP-Drosophila_melanogaster-Aiptasia_pallida-1.0</setting>
<setting name="MEME file name">/oak/stanford/groups/akundaje/marinovg/programs/meme-5.0.5/motif_databases.12.18/CIS-BP/Drosophila_melanogaster.meme</setting>
<setting name="sequence file name">/oak/stanford/groups/akundaje/marinovg/genomes/Metazoa/Cnidaria/Aiptasia_pallida-1.0/sequence/aiptasia_genome.scaffolds.fa</setting>
<setting name="background file name">--nrdb--</setting>
<setting name="allow clobber">true</setting>
<setting name="compute q-values">true</setting>
<setting name="parse genomic coord.">false</setting>
<setting name="text only">false</setting>
<setting name="scan both strands">true</setting>
<setting name="output threshold">0.0001</setting>
<setting name="threshold type">p-value</setting>
<setting name="max stored scores">-2147483648</setting>
<setting name="pseudocount">0.1</setting>
<setting name="verbosity">2</setting>
</settings>
<sequence-data num-sequences="5065" num-residues="258189365" />
<alphabet name="DNA" like="dna">
<letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/>
<letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/>
<letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/>
<letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/>
<letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/>
<letter id="V" symbol="V" equals="ACG" name="Not T"/>
<letter id="H" symbol="H" equals="ACT" name="Not G"/>
<letter id="D" symbol="D" equals="AGT" name="Not C"/>
<letter id="B" symbol="B" equals="CGT" name="Not A"/>
<letter id="M" symbol="M" equals="AC" name="Amino"/>
<letter id="R" symbol="R" equals="AG" name="Purine"/>
<letter id="W" symbol="W" equals="AT" name="Weak"/>
<letter id="S" symbol="S" equals="CG" name="Strong"/>
<letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/>
<letter id="K" symbol="K" equals="GT" name="Keto"/>
</alphabet>
<motif name="M0111_1.02" alt="retn" width="8" best-possible-match="TTTGATTA"/>
<motif name="M0135_1.02" alt="Xrp1" width="9" best-possible-match="ATAAATAAT"/>
<motif name="M0302_1.02" alt="(A3-3)_(Mus_musculus)_(DBD_0.56)" width="10" best-possible-match="GATGACGTAA"/>
<motif name="M0319_1.02" alt="(CrebB-17A)_(Mus_musculus)_(DBD_0.79)" width="10" best-possible-match="TATGACGTAA"/>
<motif name="M0576_1.02" alt="danr" width="9" best-possible-match="CCGCGGATT"/>
<motif name="M0580_1.02" alt="(dan)_(Bombyx_mori)_(DBD_0.85)" width="10" best-possible-match="TCCGCGGATT"/>
<motif name="M0596_1.02" alt="(mip120)_(Drosophila_yakuba)_(DBD_0.99)" width="8" best-possible-match="ATTTGAAA"/>
<motif name="M0641_1.02" alt="dmrt99B" width="10" best-possible-match="TGTATCAATT"/>
<motif name="M0713_1.02" alt="Ets21C" width="8" best-possible-match="CCGGAAGT"/>
<motif name="M0723_1.02" alt="(CG9571)_(Mus_musculus)_(DBD_0.64)" width="10" best-possible-match="ATGTAAACAA"/>
<motif name="M0736_1.02" alt="(Mnf)_(Mus_musculus)_(DBD_0.79)" width="8" best-possible-match="GTAAACAA"/>
<motif name="M0737_1.02" alt="(fd96Ca)_(Mus_musculus)_(DBD_0.88)" width="10" best-possible-match="TATGTAAACA"/>
<motif name="M0740_1.02" alt="slp1" width="10" best-possible-match="TGTAAACAAA"/>
<motif name="M0817_1.02" alt="gcm2" width="8" best-possible-match="ATGCGGGT"/>
<motif name="M0967_1.02" alt="(CG34367)_(Mus_musculus)_(DBD_0.96)" width="8" best-possible-match="TTAATTGG"/>
<motif name="M1088_1.02" alt="Dll" width="10" best-possible-match="GCTAATTACT"/>
<motif name="M1089_1.02" alt="bsh" width="10" best-possible-match="GTTAATTGGT"/>
<motif name="M1090_1.02" alt="ems" width="9" best-possible-match="CTAATTACC"/>
<motif name="M1091_1.02" alt="eve" width="9" best-possible-match="CTAATTACT"/>
<motif name="M1092_1.02" alt="Lim3" width="10" best-possible-match="CTAATTACGC"/>
<motif name="M1093_1.02" alt="so" width="9" best-possible-match="TGATACCCT"/>
<motif name="M1094_1.02" alt="zen2" width="10" best-possible-match="CTTAATTACC"/>
<motif name="M1095_1.02" alt="bap" width="11" best-possible-match="CTTAAGTGGTT"/>
<motif name="M1096_1.02" alt="Gsc" width="8" best-possible-match="TTAATCCC"/>
<motif name="M1097_1.02" alt="Awh" width="10" best-possible-match="ATTAATTAAT"/>
<motif name="M1098_1.02" alt="dve" width="8" best-possible-match="CTAATCCA"/>
<motif name="M1099_1.02" alt="Ptx1" width="9" best-possible-match="TTAATCCCT"/>
<motif name="M1100_1.02" alt="Optix" width="10" best-possible-match="TAGGGGATAT"/>
<motif name="M1101_1.02" alt="Vsx1" width="9" best-possible-match="GTTAATTAG"/>
<motif name="M1102_1.02" alt="CG15696" width="9" best-possible-match="GCCAATTAA"/>
<motif name="M1103_1.02" alt="Vsx2" width="8" best-possible-match="CTAATTAA"/>
<motif name="M1104_1.02" alt="FBgn0054031" width="8" best-possible-match="TTAATTGC"/>
<motif name="M1105_1.02" alt="FBpp0292044" width="8" best-possible-match="CTAATTAT"/>
<motif name="M1106_1.02" alt="CG42234" width="8" best-possible-match="ATTAATTA"/>
<motif name="M1223_1.02" alt="(ey)_(Mus_musculus)_(DBD_0.89)" width="8" best-possible-match="TTAATTAG"/>
<motif name="M1242_1.02" alt="FBpp0073832" width="8" best-possible-match="CTAATTAA"/>
<motif name="M1469_1.02" alt="Hr46" width="8" best-possible-match="GTGACCTC"/>
<motif name="M1470_1.02" alt="ftz-f1" width="8" best-possible-match="ATGACCTT"/>
<motif name="M1471_1.02" alt="tll" width="12" best-possible-match="AAATTGACCTCA"/>
<motif name="M1519_1.02" alt="(NFAT)_(Gallus_gallus)_(DBD_0.58)" width="10" best-possible-match="ATTTTCCATT"/>
<motif name="M1524_1.02" alt="(Rfx)_(Apis_mellifera)_(DBD_0.78)" width="10" best-possible-match="CCTTAGCAAC"/>
<motif name="M1529_1.02" alt="(CG9727)_(Mus_musculus)_(DBD_0.51)" width="10" best-possible-match="CCATAGCAAC"/>
<motif name="M1599_1.02" alt="(Sox21b)_(Mus_musculus)_(DBD_0.93)" width="9" best-possible-match="ATTGTTTTT"/>
<motif name="M1623_1.02" alt="(bi)_(Nasonia_vitripennis)_(DBD_0.98)" width="8" best-possible-match="TCACACCT"/>
<motif name="M1628_1.02" alt="(org-1)_(Mus_musculus)_(DBD_0.70)" width="11" best-possible-match="AGGTGTGAAGA"/>
<motif name="M1631_1.02" alt="(H15)_(Mus_musculus)_(DBD_0.69)" width="10" best-possible-match="AAGGTGTGAA"/>
<motif name="M1837_1.02" alt="(lz)_(Mus_musculus)_(DBD_0.71)" width="11" best-possible-match="AAACCACAGAC"/>
<motif name="M1849_1.02" alt="Cf2" width="10" best-possible-match="GTATATATAC"/>
<motif name="M1850_1.02" alt="usp" width="10" best-possible-match="CCGTGACCCC"/>
<motif name="M1854_1.02" alt="dl" width="12" best-possible-match="GGGGTTTTTCCG"/>
<motif name="M1858_1.02" alt="Eip74EF" width="7" best-possible-match="CCGGAAG"/>
<motif name="M1869_1.02" alt="(grn)_(Homo_sapiens)_(DBD_0.93)" width="8" best-possible-match="AGATAAGA"/>
<motif name="M1890_1.02" alt="(Nf-YA)_(Homo_sapiens)_(DBD_0.84)" width="18" best-possible-match="AGAGTGCTGATTGGTCCA"/>
<motif name="M1912_1.02" alt="Su(H)" width="16" best-possible-match="TTGTGGGAAACGAGAT"/>
<motif name="M1913_1.02" alt="sna" width="6" best-possible-match="CAGGTG"/>
<motif name="M1918_1.02" alt="Ubx" width="8" best-possible-match="TTTAATTA"/>
<motif name="M1946_1.02" alt="ovo" width="9" best-possible-match="AGTAACAGT"/>
<motif name="M1960_1.02" alt="(Sox21a)_(Mus_musculus)_(DBD_0.93)" width="8" best-possible-match="CCTTTGTT"/>
<motif name="M1974_1.02" alt="Abd-B" width="7" best-possible-match="TTTATGA"/>
<motif name="M1975_1.02" alt="Antp" width="7" best-possible-match="TTAATGA"/>
<motif name="M1977_1.02" alt="B-H1" width="7" best-possible-match="TTAATTG"/>
<motif name="M1978_1.02" alt="B-H2" width="7" best-possible-match="TTAATTG"/>
<motif name="M1980_1.02" alt="CG11085" width="7" best-possible-match="TTAATTG"/>
<motif name="M1986_1.02" alt="CG18599" width="7" best-possible-match="TTAATTA"/>
<motif name="M1988_1.02" alt="CG32532" width="7" best-possible-match="TTAATTA"/>
<motif name="M1992_1.02" alt="CG7056" width="8" best-possible-match="TTTAATTA"/>
<motif name="M1993_1.02" alt="CG9876" width="7" best-possible-match="CTAATTA"/>
<motif name="M1995_1.02" alt="Dfd" width="7" best-possible-match="TTAATGA"/>
<motif name="M2002_1.02" alt="Lag1" width="7" best-possible-match="CTACCAA"/>
<motif name="M2005_1.02" alt="NK7.1" width="7" best-possible-match="TTAATTG"/>
<motif name="M2006_1.02" alt="nub" width="8" best-possible-match="TAATTAAA"/>
<motif name="M2007_1.02" alt="OdsH" width="7" best-possible-match="CTAATTA"/>
<motif name="M2009_1.02" alt="Pph13" width="7" best-possible-match="CTAATTA"/>
<motif name="M2013_1.02" alt="Six4" width="6" best-possible-match="TGATAC"/>
<motif name="M2016_1.02" alt="achi" width="6" best-possible-match="CTGTCA"/>
<motif name="M2018_1.02" alt="ap" width="7" best-possible-match="CTAATTA"/>
<motif name="M2021_1.02" alt="bcd" width="6" best-possible-match="TAATCC"/>
<motif name="M2024_1.02" alt="btn" width="7" best-possible-match="TTAATGA"/>
<motif name="M2026_1.02" alt="caup" width="5" best-possible-match="TAACA"/>
<motif name="M2027_1.02" alt="ct" width="6" best-possible-match="TTGAAC"/>
<motif name="M2029_1.02" alt="en" width="7" best-possible-match="TTAATTA"/>
<motif name="M2031_1.02" alt="exd" width="8" best-possible-match="TGTCAAAA"/>
<motif name="M2034_1.02" alt="hbn" width="7" best-possible-match="TTAATTA"/>
<motif name="M2037_1.02" alt="inv" width="8" best-possible-match="TCTAATTA"/>
<motif name="M2038_1.02" alt="lab" width="7" best-possible-match="TTAATTA"/>
<motif name="M2039_1.02" alt="lbe" width="6" best-possible-match="TAACTA"/>
<motif name="M2040_1.02" alt="lbl" width="6" best-possible-match="TAATTA"/>
<motif name="M2043_1.02" alt="onecut" width="7" best-possible-match="TTGATTT"/>
<motif name="M2046_1.02" alt="pb" width="7" best-possible-match="TTAATTA"/>
<motif name="M2049_1.02" alt="ro" width="7" best-possible-match="CTAATTA"/>
<motif name="M2057_1.02" alt="unc-4" width="7" best-possible-match="TTAATTG"/>
<motif name="M2058_1.02" alt="unpg" width="7" best-possible-match="TTAATTA"/>
<motif name="M2059_1.02" alt="vis" width="6" best-possible-match="TGACAG"/>
<motif name="M2060_1.02" alt="FBgn0261930" width="9" best-possible-match="TTTCAAGTG"/>
<motif name="M2061_1.02" alt="vvl" width="6" best-possible-match="TGCATA"/>
<motif name="M2247_1.02" alt="btd" width="10" best-possible-match="AGGGGGCGGA"/>
<motif name="M2249_1.02" alt="D" width="11" best-possible-match="AGAACAATGGA"/>
<motif name="M2251_1.02" alt="gt" width="10" best-possible-match="ATTACGTAAT"/>
<motif name="M2252_1.02" alt="H2.0" width="7" best-possible-match="TTAATTA"/>
<motif name="M2259_1.02" alt="opa" width="12" best-possible-match="CAGCGGGGGGTC"/>
<motif name="M2263_1.02" alt="ttk" width="9" best-possible-match="AAGGATAAT"/>
<motif name="M2325_1.02" alt="BEAF-32" width="15" best-possible-match="TATCGATAGTTTCGA"/>
<motif name="M2327_1.02" alt="STAT92E" width="15" best-possible-match="TTTCCTGGAATTCCG"/>
<motif name="M2328_1.02" alt="SU(HW)" width="21" best-possible-match="GCCCAAAAGTATGCAACAAAT"/>
<motif name="M2387_1.02" alt="(HLH106)_(Homo_sapiens)_(DBD_0.80)" width="10" best-possible-match="GTGGGGTGAT"/>
<motif name="M4526_1.02" alt="(mor)_(Homo_sapiens)_(DBD_0.89)" width="15" best-possible-match="GGGGGGTGACTCATC"/>
<motif name="M4633_1.02" alt="(bs)_(Homo_sapiens)_(DBD_0.96)" width="17" best-possible-match="GACCATATAAGGCAACT"/>
<motif name="M4669_1.02" alt="FBgn0262975" width="10" best-possible-match="TGCCGAGTCA"/>
<motif name="M4670_1.02" alt="CTCF" width="10" best-possible-match="TAGATGGCGC"/>
<motif name="M4672_1.02" alt="E2f" width="13" best-possible-match="AAATTCGCGCCAA"/>
<motif name="M4673_1.02" alt="fkh" width="11" best-possible-match="TTAAGCAAACA"/>
<motif name="M4674_1.02" alt="pnr" width="18" best-possible-match="ATTTTGTGATAAGGGGGT"/>
<motif name="M4675_1.02" alt="Mef2" width="10" best-possible-match="TTATTTTTAA"/>
<motif name="M4676_1.02" alt="Myb" width="9" best-possible-match="CTGCAACTG"/>
<motif name="M4677_1.02" alt="kni" width="10" best-possible-match="CAGGGTTGCC"/>
<motif name="M4708_1.02" alt="(Tbp)_(Homo_sapiens)_(DBD_0.90)" width="10" best-possible-match="TATGCAAATA"/>
<motif name="M4720_1.02" alt="abd-A" width="8" best-possible-match="TTAATTGA"/>
<motif name="M4722_1.02" alt="ab" width="21" best-possible-match="CTCTTAATGGGTCCTGGCCTC"/>
<motif name="M4724_1.02" alt="ac" width="8" best-possible-match="GCAGGTGT"/>
<motif name="M4725_1.02" alt="da" width="8" best-possible-match="GCAGGTGT"/>
<motif name="M4728_1.02" alt="Adf1" width="8" best-possible-match="CGACCGCG"/>
<motif name="M4730_1.02" alt="Aef1" width="8" best-possible-match="TGTTGTTG"/>
<motif name="M4732_1.02" alt="al" width="7" best-possible-match="TAATTAA"/>
<motif name="M4735_1.02" alt="amos" width="11" best-possible-match="ACCATCTGCCG"/>
<motif name="M4739_1.02" alt="aop" width="9" best-possible-match="ACCGGAAGT"/>
<motif name="M4743_1.02" alt="ara" width="8" best-possible-match="TGTTATTT"/>
<motif name="M4745_1.02" alt="ase" width="7" best-possible-match="GCAGGTG"/>
<motif name="M4747_1.02" alt="Atf-2" width="11" best-possible-match="GATGACGTGAT"/>
<motif name="M4748_1.02" alt="Atf6" width="12" best-possible-match="GCTGACGTGGCA"/>
<motif name="M4750_1.02" alt="ato" width="11" best-possible-match="GTGACAGGTGG"/>
<motif name="M4757_1.02" alt="bab1" width="10" best-possible-match="TATTATTATT"/>
<motif name="M4765_1.02" alt="bin" width="10" best-possible-match="TAAACAAAGA"/>
<motif name="M4767_1.02" alt="Blimp-1" width="12" best-possible-match="GAAAGTGAAAGT"/>
<motif name="M4769_1.02" alt="bowl" width="8" best-possible-match="CCAGTAGC"/>
<motif name="M4770_1.02" alt="brk" width="8" best-possible-match="GGCGCCAG"/>
<motif name="M4771_1.02" alt="br" width="7" best-possible-match="AACTATT"/>
<motif name="M4783_1.02" alt="Bteb2" width="8" best-possible-match="GGGGGCGT"/>
<motif name="M4787_1.02" alt="byn" width="8" best-possible-match="AAGTGCGA"/>
<motif name="M4788_1.02" alt="C15" width="8" best-possible-match="GTTAATTA"/>
<motif name="M4790_1.02" alt="cad" width="8" best-possible-match="TTTTATTA"/>
<motif name="M4794_1.02" alt="cato" width="10" best-possible-match="GTCAGCTGTG"/>
<motif name="M4800_1.02" alt="CG10267" width="10" best-possible-match="TAGTGTTGTT"/>
<motif name="M4802_1.02" alt="CG10904" width="13" best-possible-match="TTTTTCTCTCATG"/>
<motif name="M4803_1.02" alt="CG11071" width="12" best-possible-match="TCTATAGGCTTA"/>
<motif name="M4806_1.02" alt="CG11294" width="7" best-possible-match="TTAATTA"/>
<motif name="M4808_1.02" alt="CG11504" width="9" best-possible-match="ATGTTGCTG"/>
<motif name="M4809_1.02" alt="CG11617" width="8" best-possible-match="TTTTAACA"/>
<motif name="M4811_1.02" alt="FBgn0263239" width="11" best-possible-match="GTGGGTGTGGC"/>
<motif name="M4813_1.02" alt="CG12155" width="12" best-possible-match="TACTCGTTGCTT"/>
<motif name="M4814_1.02" alt="CG12236" width="6" best-possible-match="TGGAAG"/>
<motif name="M4817_1.02" alt="CG12605" width="9" best-possible-match="CAACAGGTG"/>
<motif name="M4819_1.02" alt="CG12768" width="12" best-possible-match="TTTTACCAACAT"/>
<motif name="M4820_1.02" alt="CG13424" width="8" best-possible-match="TTTAATTG"/>
<motif name="M4823_1.02" alt="CG13897" width="11" best-possible-match="GTGTCTGTTGA"/>
<motif name="M4824_1.02" alt="CG14962" width="13" best-possible-match="AAAGTTGAAACAC"/>
<motif name="M4826_1.02" alt="CG15601" width="8" best-possible-match="TTTCAATC"/>
<motif name="M4829_1.02" alt="FBgn0263240" width="8" best-possible-match="TTCCGGGT"/>
<motif name="M4830_1.02" alt="FBgn0262477" width="9" best-possible-match="GATAAACAA"/>
<motif name="M4831_1.02" alt="CG17181" width="9" best-possible-match="ACAGGTGGT"/>
<motif name="M4837_1.02" alt="CG3065" width="11" best-possible-match="GTGGGCGTGGC"/>
<motif name="M4840_1.02" alt="CG31670" width="11" best-possible-match="AAATGAGCAAC"/>
<motif name="M4842_1.02" alt="CG31782" width="14" best-possible-match="TTTGGTGGTGACCT"/>
<motif name="M4843_1.02" alt="CG32105" width="9" best-possible-match="TTTAATTAG"/>
<motif name="M4847_1.02" alt="CG32830" width="8" best-possible-match="TACTTCCT"/>
<motif name="M4850_1.02" alt="CG33557" width="21" best-possible-match="TGTTGTGTCCGTGCCATCTGG"/>
<motif name="M4857_1.02" alt="CG3407" width="9" best-possible-match="GGTTGACTT"/>
<motif name="M4859_1.02" alt="CG3838" width="9" best-possible-match="ATGTTGCTT"/>
<motif name="M4860_1.02" alt="CG3919" width="15" best-possible-match="GGTGTTGCACGTTGG"/>
<motif name="M4863_1.02" alt="CG4328" width="8" best-possible-match="TAATAAAT"/>
<motif name="M4865_1.02" alt="CG4360" width="13" best-possible-match="GGGTTGTTGTTGT"/>
<motif name="M4866_1.02" alt="CG4404" width="14" best-possible-match="GCTGTAATTACTGC"/>
<motif name="M4867_1.02" alt="CG4854" width="12" best-possible-match="GTGGTTGGCAAC"/>
<motif name="M4869_1.02" alt="CG5180" width="10" best-possible-match="GATGTTCGAT"/>
<motif name="M4870_1.02" alt="CG5669" width="15" best-possible-match="AGGGGGCGGGGCCAA"/>
<motif name="M4872_1.02" alt="CG5953" width="8" best-possible-match="ATGTTTGT"/>
<motif name="M4873_1.02" alt="CG6276" width="13" best-possible-match="TTTTGTTTTATGG"/>
<motif name="M4876_1.02" alt="CG7368" width="20" best-possible-match="GGGGGGGGGGGGGGGATAAT"/>
<motif name="M4878_1.02" alt="CG7386" width="8" best-possible-match="GTGAATGA"/>
<motif name="M4879_1.02" alt="CG7745" width="15" best-possible-match="GTGCGTTTAATTAAT"/>
<motif name="M4880_1.02" alt="CG7928" width="18" best-possible-match="CAGGGCTGCATAACACCC"/>
<motif name="M4882_1.02" alt="CG8281" width="10" best-possible-match="AATATTGATG"/>
<motif name="M4883_1.02" alt="CG8319" width="8" best-possible-match="GGTGACCC"/>
<motif name="M4885_1.02" alt="CG8765" width="14" best-possible-match="TATTTATGTCGCTT"/>
<motif name="M4886_1.02" alt="CG9437" width="6" best-possible-match="TTACGT"/>
<motif name="M4889_1.02" alt="FBgn0261705" width="12" best-possible-match="ATTGGGCGTGGC"/>
<motif name="M4891_1.02" alt="FBgn0262582" width="8" best-possible-match="CCCATTCA"/>
<motif name="M4892_1.02" alt="ci" width="11" best-possible-match="GTGGGTGGTCT"/>
<motif name="M4893_1.02" alt="Clk" width="8" best-possible-match="ACACGTGA"/>
<motif name="M4894_1.02" alt="cyc" width="8" best-possible-match="ACACGTGA"/>
<motif name="M4895_1.02" alt="crc" width="11" best-possible-match="GGTGACGTAAT"/>
<motif name="M4896_1.02" alt="CG6272" width="11" best-possible-match="GGTGACGTAAT"/>
<motif name="M4897_1.02" alt="CrebA" width="12" best-possible-match="GATTACGTGGCA"/>
<motif name="M4898_1.02" alt="crol" width="15" best-possible-match="GGGGAGGGGGGGGGT"/>
<motif name="M4899_1.02" alt="crp" width="11" best-possible-match="ATCAGCTGTTT"/>
<motif name="M4900_1.02" alt="cwo" width="12" best-possible-match="ATCACGTGACCA"/>
<motif name="M4901_1.02" alt="D19A" width="9" best-possible-match="TGTGAATGA"/>
<motif name="M4902_1.02" alt="D19B" width="9" best-possible-match="TACAGGGTA"/>
<motif name="M4904_1.02" alt="Deaf1" width="6" best-possible-match="TTCGTG"/>
<motif name="M4906_1.02" alt="FBgn0263118" width="10" best-possible-match="ACCACCTGTT"/>
<motif name="M4911_1.02" alt="dimm" width="11" best-possible-match="CGCCATATGGT"/>
<motif name="M4912_1.02" alt="Dip3" width="14" best-possible-match="CAAATCTTCTCACA"/>
<motif name="M4913_1.02" alt="disco-r" width="12" best-possible-match="AAGAATGTCACC"/>
<motif name="M4914_1.02" alt="disco" width="10" best-possible-match="GGTGACACTT"/>
<motif name="M4918_1.02" alt="FBgn0262656" width="10" best-possible-match="ACCACGTGTC"/>
<motif name="M4919_1.02" alt="Max" width="10" best-possible-match="ACCACGTGTC"/>
<motif name="M4921_1.02" alt="Doc2" width="9" best-possible-match="AGGTGTGAA"/>
<motif name="M4922_1.02" alt="dpn" width="11" best-possible-match="GGCACGTGCCA"/>
<motif name="M4923_1.02" alt="Dr" width="9" best-possible-match="GACCAATTA"/>
<motif name="M4924_1.02" alt="Dref" width="12" best-possible-match="TTTTATCGATAA"/>
<motif name="M4926_1.02" alt="dsf" width="10" best-possible-match="TTTGACTTTT"/>
<motif name="M4927_1.02" alt="dsx" width="14" best-possible-match="CTACAAAGTTATTA"/>
<motif name="M4929_1.02" alt="tgo" width="11" best-possible-match="AAATCGTGACT"/>
<motif name="M4930_1.02" alt="dys" width="11" best-possible-match="AAATCGTGACT"/>
<motif name="M4931_1.02" alt="E5" width="8" best-possible-match="GTTAATTA"/>
<motif name="M4933_1.02" alt="EcR" width="8" best-possible-match="ATGACCTT"/>
<motif name="M4934_1.02" alt="eg" width="13" best-possible-match="GTGCTCTAATTTT"/>
<motif name="M4937_1.02" alt="Eip75B" width="11" best-possible-match="TGACCCACATA"/>
<motif name="M4938_1.02" alt="Eip78C" width="6" best-possible-match="TGACCT"/>
<motif name="M4939_1.02" alt="Eip93F" width="12" best-possible-match="ATTTTCGGGTGT"/>
<motif name="M4947_1.02" alt="ERR" width="8" best-possible-match="TGACCTTG"/>
<motif name="M4948_1.02" alt="esg" width="7" best-possible-match="ACAGGTG"/>
<motif name="M4949_1.02" alt="E(spl)" width="10" best-possible-match="TGGCACGTGC"/>
<motif name="M4951_1.02" alt="Ets65A" width="8" best-possible-match="CCGGAAAT"/>
<motif name="M4952_1.02" alt="Ets96B" width="11" best-possible-match="ACCGGAAGTAC"/>
<motif name="M4953_1.02" alt="Ets97D" width="9" best-possible-match="ACCGGAAGT"/>
<motif name="M4954_1.02" alt="Ets98B" width="9" best-possible-match="ACCCGGATC"/>
<motif name="M4962_1.02" alt="exex" width="7" best-possible-match="GTAATTA"/>
<motif name="M4964_1.02" alt="fd64A" width="8" best-possible-match="TATAAACA"/>
<motif name="M4966_1.02" alt="Fer1" width="11" best-possible-match="TGACAGGTGTT"/>
<motif name="M4969_1.02" alt="Fer2" width="10" best-possible-match="CGTCAGCTGG"/>
<motif name="M4971_1.02" alt="Fer3" width="10" best-possible-match="GTAACAGCTG"/>
<motif name="M4973_1.02" alt="foxo" width="9" best-possible-match="TCGTAAACA"/>
<motif name="M4974_1.02" alt="fru" width="7" best-possible-match="GAAAAAT"/>
<motif name="M4977_1.02" alt="ftz" width="8" best-possible-match="GTTAATTA"/>
<motif name="M4982_1.02" alt="GATAd" width="8" best-possible-match="TGATAAGG"/>
<motif name="M4983_1.02" alt="GATAe" width="7" best-possible-match="TGATAAG"/>
<motif name="M4985_1.02" alt="gl" width="12" best-possible-match="ATTTGAAGGATT"/>
<motif name="M4988_1.02" alt="grh" width="10" best-possible-match="CTGGTTTTAT"/>
<motif name="M4996_1.02" alt="Hand" width="9" best-possible-match="GGCCATGTG"/>
<motif name="M4997_1.02" alt="hb" width="8" best-possible-match="ATAAAAAA"/>
<motif name="M5003_1.02" alt="her" width="15" best-possible-match="ACGCAATTATGAGTA"/>
<motif name="M5004_1.02" alt="Her" width="9" best-possible-match="TGTCAAGCC"/>
<motif name="M5006_1.02" alt="Hey" width="17" best-possible-match="CAGCCGACACGTGCCCC"/>
<motif name="M5007_1.02" alt="HGTX" width="8" best-possible-match="TTTAATTA"/>
<motif name="M5009_1.02" alt="hkb" width="9" best-possible-match="GGGGCGTGA"/>
<motif name="M5011_1.02" alt="HLH4C" width="10" best-possible-match="GGAGCAGGTG"/>
<motif name="M5018_1.02" alt="HLH54F" width="11" best-possible-match="CAACAGGTGTT"/>
<motif name="M5019_1.02" alt="HLHm3" width="9" best-possible-match="TGGCACGTG"/>
<motif name="M5020_1.02" alt="HLHm5" width="10" best-possible-match="TGTCTCGTGC"/>
<motif name="M5022_1.02" alt="HLHm7" width="11" best-possible-match="TTGGCACGTGC"/>
<motif name="M5023_1.02" alt="HLHmbeta" width="8" best-possible-match="CGCGTGCC"/>
<motif name="M5024_1.02" alt="HLHmdelta" width="9" best-possible-match="TGGCACGTG"/>
<motif name="M5025_1.02" alt="HLHmgamma" width="10" best-possible-match="TGGCACGTGC"/>
<motif name="M5027_1.02" alt="Hmx" width="7" best-possible-match="TTAATTG"/>
<motif name="M5029_1.02" alt="h" width="10" best-possible-match="GGCACGTGCC"/>
<motif name="M5030_1.02" alt="Hnf4" width="15" best-possible-match="TTTTTGGCGGGGTCA"/>
<motif name="M5034_1.02" alt="Hr4" width="7" best-possible-match="TGACCTT"/>
<motif name="M5035_1.02" alt="Hr51" width="13" best-possible-match="ACCTTTGATTTTT"/>
<motif name="M5036_1.02" alt="Hr78" width="8" best-possible-match="TGACCTCT"/>
<motif name="M5037_1.02" alt="Hr83" width="14" best-possible-match="GCTACTGTGACTTT"/>
<motif name="M5039_1.02" alt="Hsf" width="14" best-possible-match="TCGAATCTTCTAGA"/>
<motif name="M5040_1.02" alt="hth" width="5" best-possible-match="TGTCA"/>
<motif name="M5043_1.02" alt="ind" width="9" best-possible-match="TACTAATTA"/>
<motif name="M5047_1.02" alt="jigr1" width="11" best-possible-match="TTTTTTTTATT"/>
<motif name="M5048_1.02" alt="jim" width="15" best-possible-match="ACAAAAAAACAAAAA"/>
<motif name="M5050_1.02" alt="Jra" width="11" best-possible-match="GGTGACTCATC"/>
<motif name="M5051_1.02" alt="kay" width="11" best-possible-match="GGTGACTCATC"/>
<motif name="M5052_1.02" alt="ken" width="9" best-possible-match="GGAGAAAGT"/>
<motif name="M5054_1.02" alt="klu" width="11" best-possible-match="TGCGTGGGTGG"/>
<motif name="M5059_1.02" alt="knrl" width="11" best-possible-match="TGCCCTAGTTT"/>
<motif name="M5060_1.02" alt="Kr" width="10" best-possible-match="AAAGGGTTAA"/>
<motif name="M5064_1.02" alt="l(1)sc" width="7" best-possible-match="GCAGGTG"/>
<motif name="M5065_1.02" alt="l(3)neo38" width="19" best-possible-match="GGGGGGGGGGGGGACGTGT"/>
<motif name="M5075_1.02" alt="Lim1" width="7" best-possible-match="TTAATTA"/>
<motif name="M5079_1.02" alt="lmd" width="14" best-possible-match="CTGTGGGGGGTCGT"/>
<motif name="M5081_1.02" alt="lola" width="7" best-possible-match="GGGTTTC"/>
<motif name="M5097_1.02" alt="luna" width="10" best-possible-match="GGGCGTTGCC"/>
<motif name="M5099_1.02" alt="Mad" width="10" best-possible-match="CTGGCGTCGC"/>
<motif name="M5101_1.02" alt="Mnt" width="7" best-possible-match="CCACGTG"/>
<motif name="M5102_1.02" alt="Med" width="12" best-possible-match="GCGGCTGGCAAT"/>
<motif name="M5103_1.02" alt="Mes2" width="12" best-possible-match="TTTAAGCCAAAA"/>
<motif name="M5104_1.02" alt="Met" width="8" best-possible-match="GACACGTG"/>
<motif name="M5107_1.02" alt="Mio" width="8" best-possible-match="ATCACGTG"/>
<motif name="M5108_1.02" alt="bigmax" width="8" best-possible-match="ATCACGTG"/>
<motif name="M5109_1.02" alt="mirr" width="8" best-possible-match="AAAAAACA"/>
<motif name="M5111_1.02" alt="FBgn0263112" width="7" best-possible-match="CACGTGA"/>
<motif name="M5113_1.02" alt="nau" width="8" best-possible-match="GACAGGTG"/>
<motif name="M5116_1.02" alt="net" width="9" best-possible-match="ACCACCTGT"/>
<motif name="M5119_1.02" alt="oc" width="7" best-possible-match="TTAATCC"/>
<motif name="M5121_1.02" alt="odd" width="11" best-possible-match="AACAGTAGCAG"/>
<motif name="M5128_1.02" alt="Oli" width="11" best-possible-match="CACCATATGGC"/>
<motif name="M5137_1.02" alt="otp" width="8" best-possible-match="TTTAATTA"/>
<motif name="M5142_1.02" alt="pad" width="9" best-possible-match="GAAGGGGTA"/>
<motif name="M5144_1.02" alt="pan" width="8" best-possible-match="CTTTGATC"/>
<motif name="M5147_1.02" alt="peb" width="7" best-possible-match="GGATGCT"/>
<motif name="M5148_1.02" alt="pfk" width="15" best-possible-match="GGAACAATGGGAATT"/>
<motif name="M5149_1.02" alt="PHDP" width="6" best-possible-match="TTAATT"/>
<motif name="M5151_1.02" alt="pho" width="14" best-possible-match="GCCGTTATGGCTTC"/>
<motif name="M5152_1.02" alt="phol" width="10" best-possible-match="CAAGATGGCG"/>
<motif name="M5157_1.02" alt="pnt" width="9" best-possible-match="ACCGGAAAT"/>
<motif name="M5158_1.02" alt="Poxm" width="19" best-possible-match="CAAAAGCAATCAACCGTGA"/>
<motif name="M5159_1.02" alt="Poxn" width="9" best-possible-match="AGCGTGACG"/>
<motif name="M5164_1.02" alt="repo" width="8" best-possible-match="TTTAATTA"/>
<motif name="M5167_1.02" alt="rib" width="9" best-possible-match="TTTTTTGCG"/>
<motif name="M5168_1.02" alt="rn" width="25" best-possible-match="CGAACAAAAAAAACAATCAAAGCAC"/>
<motif name="M5172_1.02" alt="run" width="9" best-possible-match="TAACCGCAA"/>
<motif name="M5173_1.02" alt="Bgb" width="9" best-possible-match="TTGCGGTTA"/>
<motif name="M5174_1.02" alt="Rx" width="8" best-possible-match="GCTAATTA"/>
<motif name="M5177_1.02" alt="sage" width="11" best-possible-match="AAAACACCTGT"/>
<motif name="M5179_1.02" alt="sc" width="8" best-possible-match="ACACCTGC"/>
<motif name="M5180_1.02" alt="Scr" width="9" best-possible-match="CGTTAATGA"/>
<motif name="M5182_1.02" alt="scrt" width="11" best-possible-match="CAACAGGTGGT"/>
<motif name="M5185_1.02" alt="sd" width="12" best-possible-match="GACATTCCTCGA"/>
<motif name="M5186_1.02" alt="sens-2" width="16" best-possible-match="GAGTGCTGTGATTTAT"/>
<motif name="M5187_1.02" alt="sens" width="10" best-possible-match="GCTGTGATTT"/>
<motif name="M5189_1.02" alt="shn" width="11" best-possible-match="AGGGGATTCCC"/>
<motif name="M5190_1.02" alt="Side" width="11" best-possible-match="AAAACACCTGT"/>
<motif name="M5194_1.02" alt="slbo" width="8" best-possible-match="ATTGCAAA"/>
<motif name="M5196_1.02" alt="slou" width="8" best-possible-match="TTTAATTA"/>
<motif name="M5199_1.02" alt="slp2" width="8" best-possible-match="GTAAACAA"/>
<motif name="M5203_1.02" alt="sob" width="13" best-possible-match="TAAACACAGTAGC"/>
<motif name="M5207_1.02" alt="Sox14" width="11" best-possible-match="CTCCTTTGTCC"/>
<motif name="M5208_1.02" alt="Sox15" width="8" best-possible-match="CATTGTTT"/>
<motif name="M5209_1.02" alt="Sp1" width="11" best-possible-match="GTGGGCGTGGC"/>
<motif name="M5211_1.02" alt="sqz" width="16" best-possible-match="GCTACATAAAAAAAAA"/>
<motif name="M5213_1.02" alt="srp" width="12" best-possible-match="ATCTACCGATAG"/>
<motif name="M5215_1.02" alt="sr" width="14" best-possible-match="GTGCGTGGGCGTGG"/>
<motif name="M5217_1.02" alt="ss" width="11" best-possible-match="GTCACGCAATG"/>
<motif name="M5219_1.02" alt="sug" width="14" best-possible-match="CCGCGGGGGGTCTT"/>
<motif name="M5221_1.02" alt="svp" width="7" best-possible-match="TGACCTT"/>
<motif name="M5222_1.02" alt="sv" width="15" best-possible-match="ATTGGTGCGTGACGG"/>
<motif name="M5224_1.02" alt="tai" width="9" best-possible-match="GACACGTGC"/>
<motif name="M5227_1.02" alt="tap" width="10" best-possible-match="CCATATGTCA"/>
<motif name="M5233_1.02" alt="sima" width="9" best-possible-match="GTACGTGAC"/>
<motif name="M5234_1.02" alt="sim" width="10" best-possible-match="GGTCACGTAC"/>
<motif name="M5241_1.02" alt="tin" width="8" best-possible-match="CTCAAGTG"/>
<motif name="M5244_1.02" alt="tj" width="12" best-possible-match="TGCTGACTTAGC"/>
<motif name="M5247_1.02" alt="Trl" width="10" best-possible-match="GAGAGAGCAA"/>
<motif name="M5252_1.02" alt="tup" width="8" best-possible-match="CTTAATTG"/>
<motif name="M5256_1.02" alt="twi" width="10" best-possible-match="ACCAGATGTT"/>
<motif name="M5263_1.02" alt="Usf" width="10" best-possible-match="ACCACGTGAC"/>
<motif name="M5265_1.02" alt="vfl" width="8" best-possible-match="GCAGGTAG"/>
<motif name="M5272_1.02" alt="vri" width="11" best-possible-match="TGTTACGTAAT"/>
<motif name="M5273_1.02" alt="wor" width="7" best-possible-match="GCAGGTG"/>
<motif name="M5280_1.02" alt="zen" width="9" best-possible-match="CCCTAATGA"/>
<motif name="M5283_1.02" alt="z" width="10" best-possible-match="AATCACTCAA"/>
<motif name="M5348_1.02" alt="(CG34340)_(Homo_sapiens)_(DBD_0.93)" width="13" best-possible-match="CTAATCTAATTAA"/>
<motif name="M5660_1.02" alt="(NfI)_(Homo_sapiens)_(DBD_0.80)" width="15" best-possible-match="TTGGCACGGTGCCAA"/>
<motif name="M5704_1.02" alt="(prd)_(Homo_sapiens)_(DBD_0.77)" width="10" best-possible-match="TAATCGATTA"/>
<motif name="M6166_1.02" alt="(CG6905)_(Homo_sapiens)_(DBD_0.97)" width="15" best-possible-match="ATTATGTTAAATCAC"/>
<motif name="M6186_1.02" alt="(CG7786)_(Homo_sapiens)_(DBD_0.56)" width="11" best-possible-match="TGTTACATAAC"/>
<motif name="M6235_1.02" alt="(croc)_(Homo_sapiens)_(DBD_0.92)" width="15" best-possible-match="CTTAAGTAAACAATG"/>
<motif name="M6237_1.02" alt="(fd59A)_(Homo_sapiens)_(DBD_0.89)" width="9" best-possible-match="AAACAAACA"/>
<motif name="M6238_1.02" alt="(CG11152)_(Homo_sapiens)_(DBD_0.50)" width="11" best-possible-match="AAAATAAACAT"/>
<motif name="M6277_1.02" alt="(Pdp1)_(Homo_sapiens)_(DBD_0.68)" width="13" best-possible-match="CTGTTACATAATC"/>
<motif name="M6374_1.02" alt="(scro)_(Homo_sapiens)_(DBD_0.93)" width="10" best-possible-match="CTCAAGTGCT"/>
<motif name="M6394_1.02" alt="(Hr38)_(Homo_sapiens)_(DBD_0.90)" width="9" best-possible-match="GTGACCTTT"/>
<motif name="M6410_1.02" alt="(toy)_(Homo_sapiens)_(DBD_0.84)" width="11" best-possible-match="TCAAGCGTGAA"/>
<motif name="M6459_1.02" alt="(RunxA)_(Homo_sapiens)_(DBD_0.73)" width="14" best-possible-match="AACCACAAAACCCA"/>
<motif name="M6501_1.02" alt="(HLH3B)_(Homo_sapiens)_(DBD_0.81)" width="25" best-possible-match="TCCAGTGGTTGGGCGACCATCTGTT"/>
<motif name="M6537_1.02" alt="(yps)_(Homo_sapiens)_(DBD_0.82)" width="11" best-possible-match="GGGGATTGGCC"/>
<background source="--nrdb--">
<value letter="A">0.275</value>
<value letter="C">0.225</value>
<value letter="G">0.225</value>
<value letter="T">0.275</value>
</background>
<cisml-file>cisml.xml</cisml-file>
</fimo>
