## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[spot3.2x36mers.Amphimedon_queenslandica-UQ_AmQuee_3.unique.bam] OUTPUT=spot3.2x36mers.Amphimedon_queenslandica-UQ_AmQuee_3.unique.dedup.bam METRICS_FILE=spot3.2x36mers.Amphimedon_queenslandica-UQ_AmQuee_3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Jan 19 18:52:23 PST 2022

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	6282253	0	0	225888	0	0.035957	85252126

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.928959
3.0	2.791925
4.0	3.593585
5.0	4.338294
6.0	5.030099
7.0	5.672758
8.0	6.269761
9.0	6.824354
10.0	7.339547
11.0	7.818141
12.0	8.262735
13.0	8.675745
14.0	9.059415
15.0	9.415828
16.0	9.746922
17.0	10.054494
18.0	10.340217
19.0	10.605641
20.0	10.85221
21.0	11.081262
22.0	11.294042
23.0	11.491706
24.0	11.675328
25.0	11.845905
26.0	12.004365
27.0	12.151567
28.0	12.288312
29.0	12.415343
30.0	12.533349
31.0	12.642972
32.0	12.744807
33.0	12.839408
34.0	12.927288
35.0	13.008925
36.0	13.084763
37.0	13.155213
38.0	13.220659
39.0	13.281455
40.0	13.337932
41.0	13.390397
42.0	13.439134
43.0	13.48441
44.0	13.526469
45.0	13.56554
46.0	13.601835
47.0	13.635552
48.0	13.666874
49.0	13.695971
50.0	13.723
51.0	13.74811
52.0	13.771435
53.0	13.793104
54.0	13.813233
55.0	13.831932
56.0	13.849303
57.0	13.86544
58.0	13.88043
59.0	13.894355
60.0	13.907292
61.0	13.919309
62.0	13.930472
63.0	13.940843
64.0	13.950476
65.0	13.959426
66.0	13.967739
67.0	13.975462
68.0	13.982637
69.0	13.989301
70.0	13.995492
71.0	14.001244
72.0	14.006587
73.0	14.01155
74.0	14.01616
75.0	14.020444
76.0	14.024422
77.0	14.028119
78.0	14.031552
79.0	14.034742
80.0	14.037705
81.0	14.040457
82.0	14.043014
83.0	14.04539
84.0	14.047596
85.0	14.049646
86.0	14.05155
87.0	14.053319
88.0	14.054963
89.0	14.056489
90.0	14.057907
91.0	14.059225
92.0	14.060449
93.0	14.061585
94.0	14.062641
95.0	14.063622
96.0	14.064534
97.0	14.06538
98.0	14.066167
99.0	14.066898
100.0	14.067576