## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[larvae2.2x36mers.Amphimedon_queenslandica-UQ_AmQuee_3.unique.bam] OUTPUT=larvae2.2x36mers.Amphimedon_queenslandica-UQ_AmQuee_3.unique.dedup.bam METRICS_FILE=larvae2.2x36mers.Amphimedon_queenslandica-UQ_AmQuee_3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Jan 19 18:53:24 PST 2022

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	6010092	0	0	487394	0	0.081096	35023767

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.842316
3.0	2.551811
4.0	3.149431
5.0	3.652815
6.0	4.076824
7.0	4.433972
8.0	4.734805
9.0	4.9882
10.0	5.201639
11.0	5.381423
12.0	5.532857
13.0	5.660412
14.0	5.767854
15.0	5.858354
16.0	5.934584
17.0	5.998793
18.0	6.052878
19.0	6.098434
20.0	6.136807
21.0	6.169129
22.0	6.196354
23.0	6.219286
24.0	6.238602
25.0	6.254873
26.0	6.268578
27.0	6.280121
28.0	6.289845
29.0	6.298035
30.0	6.304934
31.0	6.310745
32.0	6.315639
33.0	6.319762
34.0	6.323235
35.0	6.32616
36.0	6.328624
37.0	6.330699
38.0	6.332448
39.0	6.33392
40.0	6.33516
41.0	6.336205
42.0	6.337085
43.0	6.337826
44.0	6.338451
45.0	6.338976
46.0	6.339419
47.0	6.339793
48.0	6.340107
49.0	6.340372
50.0	6.340595
51.0	6.340782
52.0	6.340941
53.0	6.341074
54.0	6.341186
55.0	6.341281
56.0	6.34136
57.0	6.341427
58.0	6.341484
59.0	6.341531
60.0	6.341572
61.0	6.341605
62.0	6.341634
63.0	6.341658
64.0	6.341678
65.0	6.341695
66.0	6.341709
67.0	6.341721
68.0	6.341731
69.0	6.34174
70.0	6.341747
71.0	6.341753
72.0	6.341758
73.0	6.341763
74.0	6.341766
75.0	6.341769
76.0	6.341772
77.0	6.341774
78.0	6.341776
79.0	6.341777
80.0	6.341779
81.0	6.34178
82.0	6.341781
83.0	6.341782
84.0	6.341782
85.0	6.341783
86.0	6.341783
87.0	6.341784
88.0	6.341784
89.0	6.341784
90.0	6.341784
91.0	6.341785
92.0	6.341785
93.0	6.341785
94.0	6.341785
95.0	6.341785
96.0	6.341785
97.0	6.341785
98.0	6.341785
99.0	6.341785
100.0	6.341785