## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[brown2.2x36mers.Amphimedon_queenslandica-UQ_AmQuee_3.unique.bam] OUTPUT=brown2.2x36mers.Amphimedon_queenslandica-UQ_AmQuee_3.unique.dedup.bam METRICS_FILE=brown2.2x36mers.Amphimedon_queenslandica-UQ_AmQuee_3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Jan 19 18:53:23 PST 2022

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	8285989	0	0	633993	0	0.076514	51348247

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.850978
3.0	2.575143
4.0	3.191391
5.0	3.715805
6.0	4.16207
7.0	4.541832
8.0	4.865001
9.0	5.140011
10.0	5.374038
11.0	5.573191
12.0	5.742665
13.0	5.886884
14.0	6.009612
15.0	6.11405
16.0	6.202925
17.0	6.278555
18.0	6.342915
19.0	6.397684
20.0	6.444291
21.0	6.483953
22.0	6.517704
23.0	6.546426
24.0	6.570867
25.0	6.591666
26.0	6.609366
27.0	6.624428
28.0	6.637245
29.0	6.648153
30.0	6.657434
31.0	6.665333
32.0	6.672055
33.0	6.677775
34.0	6.682642
35.0	6.686785
36.0	6.690309
37.0	6.693309
38.0	6.695862
39.0	6.698034
40.0	6.699882
41.0	6.701455
42.0	6.702794
43.0	6.703933
44.0	6.704903
45.0	6.705728
46.0	6.70643
47.0	6.707027
48.0	6.707535
49.0	6.707968
50.0	6.708336
51.0	6.708649
52.0	6.708916
53.0	6.709143
54.0	6.709336
55.0	6.7095
56.0	6.70964
57.0	6.709759
58.0	6.70986
59.0	6.709946
60.0	6.71002
61.0	6.710082
62.0	6.710135
63.0	6.71018
64.0	6.710219
65.0	6.710251
66.0	6.710279
67.0	6.710303
68.0	6.710323
69.0	6.71034
70.0	6.710355
71.0	6.710367
72.0	6.710378
73.0	6.710387
74.0	6.710395
75.0	6.710401
76.0	6.710407
77.0	6.710411
78.0	6.710415
79.0	6.710419
80.0	6.710422
81.0	6.710424
82.0	6.710426
83.0	6.710428
84.0	6.71043
85.0	6.710431
86.0	6.710432
87.0	6.710433
88.0	6.710434
89.0	6.710434
90.0	6.710435
91.0	6.710435
92.0	6.710436
93.0	6.710436
94.0	6.710437
95.0	6.710437
96.0	6.710437
97.0	6.710437
98.0	6.710437
99.0	6.710438
100.0	6.710438