## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[brown1.2x36mers.Amphimedon_queenslandica.Aqu1.20.unique.bam] OUTPUT=brown1.2x36mers.Amphimedon_queenslandica.Aqu1.20.unique.dedup.bam METRICS_FILE=brown1.2x36mers.Amphimedon_queenslandica.Aqu1.20.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Jan 19 21:06:01 PST 2022

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	9210774	0	0	368436	0	0.040001	112041924

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.92108
3.0	2.769469
4.0	3.550902
5.0	4.270666
6.0	4.933625
7.0	5.544264
8.0	6.106711
9.0	6.62477
10.0	7.101944
11.0	7.541459
12.0	7.946288
13.0	8.319168
14.0	8.66262
15.0	8.978966
16.0	9.270347
17.0	9.538732
18.0	9.785937
19.0	10.013631
20.0	10.223357
21.0	10.41653
22.0	10.594459
23.0	10.758345
24.0	10.909297
25.0	11.048337
26.0	11.176403
27.0	11.294362
28.0	11.403012
29.0	11.503088
30.0	11.595265
31.0	11.680168
32.0	11.75837
33.0	11.830401
34.0	11.896747
35.0	11.957856
36.0	12.014144
37.0	12.065989
38.0	12.113742
39.0	12.157726
40.0	12.19824
41.0	12.235556
42.0	12.269927
43.0	12.301586
44.0	12.330746
45.0	12.357604
46.0	12.382343
47.0	12.40513
48.0	12.426118
49.0	12.44545
50.0	12.463256
51.0	12.479657
52.0	12.494764
53.0	12.508678
54.0	12.521495
55.0	12.5333
56.0	12.544173
57.0	12.554188
58.0	12.563413
59.0	12.571909
60.0	12.579735
61.0	12.586944
62.0	12.593583
63.0	12.599699
64.0	12.605332
65.0	12.61052
66.0	12.615299
67.0	12.619701
68.0	12.623755
69.0	12.62749
70.0	12.63093
71.0	12.634098
72.0	12.637016
73.0	12.639704
74.0	12.64218
75.0	12.64446
76.0	12.64656
77.0	12.648495
78.0	12.650277
79.0	12.651918
80.0	12.65343
81.0	12.654823
82.0	12.656105
83.0	12.657287
84.0	12.658375
85.0	12.659377
86.0	12.6603
87.0	12.661151
88.0	12.661934
89.0	12.662655
90.0	12.66332
91.0	12.663932
92.0	12.664495
93.0	12.665015
94.0	12.665493
95.0	12.665933
96.0	12.666339
97.0	12.666713
98.0	12.667057
99.0	12.667374
100.0	12.667666