## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[adult61.2x36mers.Amphimedon_queenslandica-UQ_AmQuee_3.unique.bam] OUTPUT=adult61.2x36mers.Amphimedon_queenslandica-UQ_AmQuee_3.unique.dedup.bam METRICS_FILE=adult61.2x36mers.Amphimedon_queenslandica-UQ_AmQuee_3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Jan 19 18:53:24 PST 2022

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	12495462	0	0	544782	0	0.043598	139105736

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.914089
3.0	2.749648
4.0	3.513424
5.0	4.211583
6.0	4.849763
7.0	5.433116
8.0	5.966353
9.0	6.453779
10.0	6.89933
11.0	7.306603
12.0	7.678887
13.0	8.019188
14.0	8.330254
15.0	8.614595
16.0	8.874509
17.0	9.112093
18.0	9.329266
19.0	9.527782
20.0	9.709243
21.0	9.875114
22.0	10.026736
23.0	10.165331
24.0	10.29202
25.0	10.407824
26.0	10.51368
27.0	10.610442
28.0	10.698891
29.0	10.779741
30.0	10.853645
31.0	10.9212
32.0	10.982952
33.0	11.039398
34.0	11.090995
35.0	11.138159
36.0	11.181271
37.0	11.22068
38.0	11.256702
39.0	11.289631
40.0	11.31973
41.0	11.347243
42.0	11.372393
43.0	11.395382
44.0	11.416396
45.0	11.435605
46.0	11.453163
47.0	11.469213
48.0	11.483884
49.0	11.497295
50.0	11.509554
51.0	11.520759
52.0	11.531002
53.0	11.540365
54.0	11.548923
55.0	11.556746
56.0	11.563897
57.0	11.570434
58.0	11.576409
59.0	11.581871
60.0	11.586864
61.0	11.591427
62.0	11.595599
63.0	11.599412
64.0	11.602898
65.0	11.606084
66.0	11.608997
67.0	11.611659
68.0	11.614092
69.0	11.616317
70.0	11.61835
71.0	11.620209
72.0	11.621908
73.0	11.623461
74.0	11.62488
75.0	11.626178
76.0	11.627364
77.0	11.628449
78.0	11.62944
79.0	11.630346
80.0	11.631174
81.0	11.631931
82.0	11.632623
83.0	11.633255
84.0	11.633833
85.0	11.634362
86.0	11.634845
87.0	11.635286
88.0	11.63569
89.0	11.636059
90.0	11.636396
91.0	11.636705
92.0	11.636987
93.0	11.637244
94.0	11.63748
95.0	11.637695
96.0	11.637892
97.0	11.638071
98.0	11.638236
99.0	11.638386
100.0	11.638523