## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[adult54.2x36mers.Amphimedon_queenslandica-UQ_AmQuee_3.unique.bam] OUTPUT=adult54.2x36mers.Amphimedon_queenslandica-UQ_AmQuee_3.unique.dedup.bam METRICS_FILE=adult54.2x36mers.Amphimedon_queenslandica-UQ_AmQuee_3.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Jan 19 18:53:24 PST 2022

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	11989117	0	0	476394	0	0.039736	146837979

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.921596
3.0	2.770934
4.0	3.553681
5.0	4.275058
6.0	4.939875
7.0	5.552568
8.0	6.117223
9.0	6.637606
10.0	7.11719
11.0	7.559172
12.0	7.966501
13.0	8.341893
14.0	8.687853
15.0	9.006688
16.0	9.300526
17.0	9.571325
18.0	9.820892
19.0	10.050892
20.0	10.26286
21.0	10.458208
22.0	10.63824
23.0	10.804156
24.0	10.957064
25.0	11.097984
26.0	11.227855
27.0	11.347543
28.0	11.457847
29.0	11.559503
30.0	11.653189
31.0	11.739529
32.0	11.8191
33.0	11.892432
34.0	11.960015
35.0	12.022299
36.0	12.0797
37.0	12.1326
38.0	12.181352
39.0	12.226282
40.0	12.26769
41.0	12.305851
42.0	12.341019
43.0	12.373431
44.0	12.403301
45.0	12.43083
46.0	12.4562
47.0	12.479581
48.0	12.501128
49.0	12.520987
50.0	12.539288
51.0	12.556154
52.0	12.571698
53.0	12.586024
54.0	12.599226
55.0	12.611393
56.0	12.622606
57.0	12.63294
58.0	12.642464
59.0	12.651241
60.0	12.659329
61.0	12.666784
62.0	12.673654
63.0	12.679986
64.0	12.685821
65.0	12.691198
66.0	12.696154
67.0	12.700722
68.0	12.704931
69.0	12.70881
70.0	12.712386
71.0	12.71568
72.0	12.718717
73.0	12.721515
74.0	12.724094
75.0	12.726471
76.0	12.728662
77.0	12.73068
78.0	12.732541
79.0	12.734255
80.0	12.735835
81.0	12.737292
82.0	12.738634
83.0	12.739871
84.0	12.741011
85.0	12.742061
86.0	12.743029
87.0	12.743921
88.0	12.744744
89.0	12.745501
90.0	12.7462
91.0	12.746844
92.0	12.747437
93.0	12.747983
94.0	12.748487
95.0	12.748951
96.0	12.749379
97.0	12.749774
98.0	12.750137
99.0	12.750472
100.0	12.750781