python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py LUC-BG4-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05 0 LUC-BG4.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes LUC-BG4-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py LUC-H3K18ac-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05 0 LUC-H3K18ac.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes LUC-H3K18ac-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py LUC-H3K27ac-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05 0 LUC-H3K27ac.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes LUC-H3K27ac-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py LUC-H3K27me3-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05 0 LUC-H3K27me3.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes LUC-H3K27me3-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py LUC-H3K36ac-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05 0 LUC-H3K36ac.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes LUC-H3K36ac-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py LUC-H3K36me2-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05 0 LUC-H3K36me2.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes LUC-H3K36me2-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py LUC-H3K4me3_snap-chip_control-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05 0 LUC-H3K4me3_snap-chip_control.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes LUC-H3K4me3_snap-chip_control-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py LUC-H3-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05 0 LUC-H3.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes LUC-H3-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py LUC-H4K20me3-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05 0 LUC-H4K20me3.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes LUC-H4K20me3-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py LUC-NSD2-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05 0 LUC-NSD2.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes LUC-NSD2-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py LUC-SIRT7-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05 0 LUC-SIRT7.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes LUC-SIRT7-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py S7KO-BG4-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05 0 S7KO-BG4.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes S7KO-BG4-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py S7KO-H3K18ac-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05 0 S7KO-H3K18ac.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes S7KO-H3K18ac-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py S7KO-H3K27ac-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05 0 S7KO-H3K27ac.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes S7KO-H3K27ac-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py S7KO-H3K27me3-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05 0 S7KO-H3K27me3.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes S7KO-H3K27me3-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py S7KO-H3K36ac-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05 0 S7KO-H3K36ac.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes S7KO-H3K36ac-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py S7KO-H3K36me2-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05 0 S7KO-H3K36me2.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes S7KO-H3K36me2-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py S7KO-H3K4me3_snap-chip_control-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05 0 S7KO-H3K4me3_snap-chip_control.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes S7KO-H3K4me3_snap-chip_control-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py S7KO-H3-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05 0 S7KO-H3.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes S7KO-H3-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py S7KO-H4K20me3-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05 0 S7KO-H4K20me3.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes S7KO-H4K20me3-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py S7KO-NSD2-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05 0 S7KO-NSD2.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes S7KO-NSD2-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py S7KO-SIRT7-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05 0 S7KO-SIRT7.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes S7KO-SIRT7-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.05.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py LUC-BG4-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10 0 LUC-BG4.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes LUC-BG4-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py LUC-H3K18ac-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10 0 LUC-H3K18ac.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes LUC-H3K18ac-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py LUC-H3K27ac-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10 0 LUC-H3K27ac.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes LUC-H3K27ac-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py LUC-H3K27me3-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10 0 LUC-H3K27me3.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes LUC-H3K27me3-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py LUC-H3K36ac-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10 0 LUC-H3K36ac.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes LUC-H3K36ac-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py LUC-H3K36me2-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10 0 LUC-H3K36me2.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes LUC-H3K36me2-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py LUC-H3K4me3_snap-chip_control-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10 0 LUC-H3K4me3_snap-chip_control.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes LUC-H3K4me3_snap-chip_control-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py LUC-H3-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10 0 LUC-H3.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes LUC-H3-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py LUC-H4K20me3-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10 0 LUC-H4K20me3.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes LUC-H4K20me3-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py LUC-NSD2-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10 0 LUC-NSD2.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes LUC-NSD2-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py LUC-SIRT7-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10 0 LUC-SIRT7.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes LUC-SIRT7-vs-LUC-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py S7KO-BG4-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10 0 S7KO-BG4.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes S7KO-BG4-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py S7KO-H3K18ac-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10 0 S7KO-H3K18ac.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes S7KO-H3K18ac-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py S7KO-H3K27ac-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10 0 S7KO-H3K27ac.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes S7KO-H3K27ac-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py S7KO-H3K27me3-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10 0 S7KO-H3K27me3.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes S7KO-H3K27me3-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py S7KO-H3K36ac-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10 0 S7KO-H3K36ac.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes S7KO-H3K36ac-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py S7KO-H3K36me2-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10 0 S7KO-H3K36me2.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes S7KO-H3K36me2-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py S7KO-H3K4me3_snap-chip_control-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10 0 S7KO-H3K4me3_snap-chip_control.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes S7KO-H3K4me3_snap-chip_control-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py S7KO-H3-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10 0 S7KO-H3.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes S7KO-H3-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py S7KO-H4K20me3-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10 0 S7KO-H4K20me3.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes S7KO-H4K20me3-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py S7KO-NSD2-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10 0 S7KO-NSD2.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes S7KO-NSD2-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10.RPM -RPM -printSum -uniqueBAM
python /oak/stanford/groups/akundaje/marinovg/code/bedRPKMfromBAM.py S7KO-SIRT7-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10 0 S7KO-SIRT7.2x25mers.hg38.unique.merged.sorted.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes S7KO-SIRT7-vs-S7KO-IgG.2x25mers.MACS-2.1.0.ind-reps.IDR-0.10.RPM -RPM -printSum -uniqueBAM