## net.sf.picard.metrics.StringHeader # net.sf.picard.sam.MarkDuplicates INPUT=[LUC1-H3K36me2.2x25mers.hg38.unique.bam] OUTPUT=LUC1-H3K36me2.2x25mers.hg38.unique.dedup.bam METRICS_FILE=LUC1-H3K36me2.2x25mers.hg38.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false ## net.sf.picard.metrics.StringHeader # Started on: Wed Feb 01 14:20:04 PST 2023 ## METRICS CLASS net.sf.picard.sam.DuplicationMetrics LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE Unknown Library 0 5117087 2861702 0 623591 425804 0.121864 54060948 ## HISTOGRAM java.lang.Double BIN VALUE 1.0 1.086542 2.0 2.074957 3.0 2.974105 4.0 3.792049 5.0 4.536122 6.0 5.212996 7.0 5.828741 8.0 6.388875 9.0 6.898423 10.0 7.361952 11.0 7.783619 12.0 8.167204 13.0 8.516147 14.0 8.833576 15.0 9.122337 16.0 9.385019 17.0 9.623978 18.0 9.841356 19.0 10.039102 20.0 10.218989 21.0 10.38263 22.0 10.531492 23.0 10.66691 24.0 10.790098 25.0 10.902161 26.0 11.004103 27.0 11.096838 28.0 11.181199 29.0 11.25794 30.0 11.327751 31.0 11.391257 32.0 11.449028 33.0 11.501581 34.0 11.549388 35.0 11.592877 36.0 11.632439 37.0 11.668428 38.0 11.701167 39.0 11.730949 40.0 11.758041 41.0 11.782687 42.0 11.805106 43.0 11.825501 44.0 11.844054 45.0 11.860932 46.0 11.876285 47.0 11.890251 48.0 11.902957 49.0 11.914515 50.0 11.925029 51.0 11.934593 52.0 11.943294 53.0 11.951209 54.0 11.958409 55.0 11.964958 56.0 11.970917 57.0 11.976337 58.0 11.981268 59.0 11.985753 60.0 11.989833 61.0 11.993545 62.0 11.996922 63.0 11.999993 64.0 12.002787 65.0 12.005329 66.0 12.007642 67.0 12.009745 68.0 12.011659 69.0 12.013399 70.0 12.014983 71.0 12.016423 72.0 12.017734 73.0 12.018926 74.0 12.02001 75.0 12.020997 76.0 12.021894 77.0 12.02271 78.0 12.023453 79.0 12.024128 80.0 12.024743 81.0 12.025302 82.0 12.02581 83.0 12.026273 84.0 12.026694 85.0 12.027077 86.0 12.027425 87.0 12.027742 88.0 12.02803 89.0 12.028292 90.0 12.028531 91.0 12.028747 92.0 12.028945 93.0 12.029124 94.0 12.029288 95.0 12.029436 96.0 12.029571 97.0 12.029694 98.0 12.029806 99.0 12.029908 100.0 12.03