# R script for Peak Model
#  -- generated by MACS
p <- c(0.0113038777215,0.0128765911437,0.0152356612768,0.0180862043545,0.0200520961321,0.0208384528432,0.0213299257876,0.0224111662653,0.0232958175652,0.024377058043,0.0246719418096,0.0261463606428,0.026048066054,0.026834422765,0.0266378335873,0.0262446552317,0.026048066054,0.0252617093429,0.0247702363985,0.0229026392097,0.0230009337986,0.0209367474321,0.0207401582543,0.0185776772989,0.0183810881211,0.01759473141,0.016808374699,0.0172998476434,0.0177913205878,0.0185776772989,0.0187742664766,0.0204452744876,0.0211333366098,0.0216248095542,0.0221162824986,0.0232958175652,0.0228043446208,0.023492406743,0.0227060500319,0.0229026392097,0.0221162824986,0.021821398732,0.0206418636654,0.0209367474321,0.0209367474321,0.0211333366098,0.0219196933209,0.0206418636654,0.0208384528432,0.0205435690765,0.0209367474321,0.0202486853099,0.0211333366098,0.0205435690765,0.0206418636654,0.0208384528432,0.0210350420209,0.0215265149654,0.0216248095542,0.0226077554431,0.0217231041431,0.0220179879098,0.0216248095542,0.0215265149654,0.0225094608542,0.0222145770875,0.0207401582543,0.0212316311987,0.0210350420209,0.0205435690765,0.0199538015432,0.020150390721,0.0203469798988,0.0211333366098,0.0195606231877,0.0190691502433,0.0204452744876,0.0193640340099,0.0200520961321,0.0188725610655,0.0195606231877,0.0199538015432,0.0196589177766,0.0197572123655,0.020150390721,0.0209367474321,0.0210350420209,0.0212316311987,0.0214282203765,0.0224111662653,0.0229026392097,0.0238855850985,0.0239838796874,0.0227060500319,0.0223128716764,0.0221162824986,0.021821398732,0.0236889959208,0.0226077554431,0.0225094608542,0.0224111662653,0.0207401582543,0.0197572123655,0.0200520961321,0.0205435690765,0.020150390721,0.0197572123655,0.0185776772989,0.0191674448322,0.01847938271,0.0183810881211,0.0182827935322,0.0189708556544,0.0194623285988,0.0196589177766,0.019265739421,0.019265739421,0.019265739421,0.0180862043545,0.0185776772989,0.0182827935322,0.0191674448322,0.0193640340099,0.0193640340099,0.0185776772989,0.0190691502433,0.0198555069543,0.0196589177766,0.0207401582543,0.0210350420209,0.0215265149654,0.0214282203765,0.0212316311987,0.0214282203765,0.0217231041431,0.0214282203765,0.0200520961321,0.0209367474321,0.0208384528432,0.0210350420209,0.020150390721,0.0199538015432,0.0206418636654,0.0203469798988,0.0203469798988,0.020150390721,0.0207401582543,0.0190691502433,0.0195606231877,0.0196589177766,0.0198555069543,0.0198555069543,0.0196589177766,0.019265739421,0.0191674448322,0.0198555069543,0.0200520961321,0.0212316311987,0.0206418636654,0.0214282203765,0.021821398732,0.0216248095542,0.0213299257876,0.021821398732,0.0224111662653,0.0223128716764,0.0225094608542,0.0224111662653,0.023492406743,0.0216248095542,0.021821398732,0.0217231041431,0.0217231041431,0.0214282203765,0.0209367474321,0.0208384528432,0.0209367474321,0.0204452744876,0.0191674448322,0.0200520961321,0.0198555069543,0.0199538015432,0.020150390721,0.0204452744876,0.0202486853099,0.0198555069543,0.0204452744876,0.0209367474321,0.0213299257876,0.0204452744876,0.0202486853099,0.0200520961321,0.0194623285988,0.0195606231877,0.0198555069543,0.0200520961321,0.0196589177766,0.0200520961321,0.0198555069543,0.0204452744876,0.0205435690765,0.0206418636654,0.0211333366098,0.0209367474321,0.0223128716764,0.0228043446208,0.0225094608542,0.021821398732,0.0219196933209,0.0216248095542,0.0214282203765,0.0208384528432,0.0202486853099,0.0200520961321,0.019265739421,0.0187742664766,0.0182827935322,0.0186759718877,0.0185776772989,0.019265739421,0.0199538015432,0.0198555069543,0.0205435690765,0.0205435690765,0.0200520961321,0.0205435690765,0.0206418636654,0.0210350420209,0.0212316311987,0.0208384528432,0.0207401582543,0.0219196933209,0.0212316311987,0.0211333366098,0.0206418636654,0.0209367474321,0.0211333366098,0.0202486853099,0.0197572123655,0.0194623285988,0.0190691502433,0.0178896151767,0.0187742664766,0.0190691502433,0.0208384528432,0.0196589177766,0.0203469798988,0.0200520961321,0.0200520961321,0.0208384528432,0.0205435690765,0.0211333366098,0.0211333366098,0.0209367474321,0.020150390721,0.0205435690765,0.0188725610655,0.0190691502433,0.0190691502433,0.0178896151767,0.0176930259989,0.0183810881211,0.0178896151767,0.0177913205878,0.0173981422323,0.0174964368212,0.0189708556544,0.0189708556544,0.0189708556544,0.0197572123655,0.0204452744876,0.019265739421,0.0190691502433,0.0204452744876,0.0197572123655,0.0194623285988,0.0190691502433,0.0191674448322,0.0212316311987,0.0210350420209,0.0202486853099,0.0207401582543,0.0209367474321,0.0211333366098,0.0216248095542,0.0215265149654,0.0219196933209,0.0220179879098,0.0209367474321,0.0213299257876,0.0222145770875,0.0224111662653,0.0227060500319,0.021821398732,0.0216248095542,0.0221162824986,0.0215265149654,0.0217231041431,0.0207401582543,0.0208384528432,0.0305696171426,0.0515063645746,0.0741141200177,0.0979014105274,0.118838157959,0.141839091758,0.167592274045,0.190691502433,0.215854917187,0.237971199685,0.251929031307,0.254681279796,0.252125620485,0.252125620485,0.252223915073,0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m <- 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ycorr <- 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altd  <- c(298)
x <- seq.int((length(p)-1)/2*-1,(length(p)-1)/2)
pdf('LUC-SIRT7-vs-LUC-IgG.2x25mers.MACS-2.1.0.p1e-1_model.pdf',height=6,width=6)
plot(x,p,type='l',col=c('red'),main='Peak Model',xlab='Distance to the middle',ylab='Percentage')
lines(x,m,col=c('blue'))
legend('topleft',c('forward tags','reverse tags'),lty=c(1,1,1),col=c('red','blue'))
plot(xcorr,ycorr,type='l',col=c('black'),main='Cross-Correlation',xlab='Lag between + and - tags',ylab='Correlation')
abline(v=altd,lty=2,col=c('red'))
legend('topleft','alternative lag(s)',lty=2,col='red')
legend('right','alt lag(s) : 298',bty='n')
dev.off()