python ~/code/bedRPKMfromBAM.py H33118.2x25mers.hg38.unique.MACS2_peaks.narrowPeak 0 H33118.2x25mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H33118.2x25mers.hg38.unique.MACS2_peaks.narrowPeak.RPM -RPM -uniqueBAM &
python ~/code/bedRPKMfromBAM.py H33118.2x25mers.hg38.unique.maxFL120bp.MACS2_peaks.narrowPeak 0 H33118.2x25mers.hg38.unique.maxFL120bp.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H33118.2x25mers.hg38.unique.maxFL120bp.MACS2_peaks.narrowPeak.RPM -RPM -uniqueBAM &
python ~/code/bedRPKMfromBAM.py H33118.2x25mers.hg38.unique.minFL150bp.MACS2_peaks.narrowPeak 0 H33118.2x25mers.hg38.unique.minFL150bp.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H33118.2x25mers.hg38.unique.minFL150bp.MACS2_peaks.narrowPeak.RPM -RPM -uniqueBAM &
python ~/code/bedRPKMfromBAM.py H33119.2x25mers.hg38.unique.MACS2_peaks.narrowPeak 0 H33119.2x25mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H33119.2x25mers.hg38.unique.MACS2_peaks.narrowPeak.RPM -RPM -uniqueBAM &
python ~/code/bedRPKMfromBAM.py H33119.2x25mers.hg38.unique.maxFL120bp.MACS2_peaks.narrowPeak 0 H33119.2x25mers.hg38.unique.maxFL120bp.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H33119.2x25mers.hg38.unique.maxFL120bp.MACS2_peaks.narrowPeak.RPM -RPM -uniqueBAM &
python ~/code/bedRPKMfromBAM.py H33119.2x25mers.hg38.unique.minFL150bp.MACS2_peaks.narrowPeak 0 H33119.2x25mers.hg38.unique.minFL150bp.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H33119.2x25mers.hg38.unique.minFL150bp.MACS2_peaks.narrowPeak.RPM -RPM -uniqueBAM &
python ~/code/bedRPKMfromBAM.py H34146.2x25mers.hg38.unique.MACS2_peaks.narrowPeak 0 H34146.2x25mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H34146.2x25mers.hg38.unique.MACS2_peaks.narrowPeak.RPM -RPM -uniqueBAM &
python ~/code/bedRPKMfromBAM.py H34146.2x25mers.hg38.unique.maxFL120bp.MACS2_peaks.narrowPeak 0 H34146.2x25mers.hg38.unique.maxFL120bp.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H34146.2x25mers.hg38.unique.maxFL120bp.MACS2_peaks.narrowPeak.RPM -RPM -uniqueBAM &
python ~/code/bedRPKMfromBAM.py H34146.2x25mers.hg38.unique.minFL150bp.MACS2_peaks.narrowPeak 0 H34146.2x25mers.hg38.unique.minFL150bp.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H34146.2x25mers.hg38.unique.minFL150bp.MACS2_peaks.narrowPeak.RPM -RPM -uniqueBAM &
python ~/code/bedRPKMfromBAM.py H34412.2x25mers.hg38.unique.MACS2_peaks.narrowPeak 0 H34412.2x25mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H34412.2x25mers.hg38.unique.MACS2_peaks.narrowPeak.RPM -RPM -uniqueBAM &
python ~/code/bedRPKMfromBAM.py H34412.2x25mers.hg38.unique.maxFL120bp.MACS2_peaks.narrowPeak 0 H34412.2x25mers.hg38.unique.maxFL120bp.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H34412.2x25mers.hg38.unique.maxFL120bp.MACS2_peaks.narrowPeak.RPM -RPM -uniqueBAM &
python ~/code/bedRPKMfromBAM.py H34412.2x25mers.hg38.unique.minFL150bp.MACS2_peaks.narrowPeak 0 H34412.2x25mers.hg38.unique.minFL150bp.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes H34412.2x25mers.hg38.unique.minFL150bp.MACS2_peaks.narrowPeak.RPM -RPM -uniqueBAM &
python ~/code/bedRPKMfromBAM.py R34125.2x25mers.hg38.unique.MACS2_peaks.narrowPeak 0 R34125.2x25mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes R34125.2x25mers.hg38.unique.MACS2_peaks.narrowPeak.RPM -RPM -uniqueBAM &
python ~/code/bedRPKMfromBAM.py R34125.2x25mers.hg38.unique.maxFL120bp.MACS2_peaks.narrowPeak 0 R34125.2x25mers.hg38.unique.maxFL120bp.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes R34125.2x25mers.hg38.unique.maxFL120bp.MACS2_peaks.narrowPeak.RPM -RPM -uniqueBAM &
python ~/code/bedRPKMfromBAM.py R34125.2x25mers.hg38.unique.minFL150bp.MACS2_peaks.narrowPeak 0 R34125.2x25mers.hg38.unique.minFL150bp.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes R34125.2x25mers.hg38.unique.minFL150bp.MACS2_peaks.narrowPeak.RPM -RPM -uniqueBAM &
python ~/code/bedRPKMfromBAM.py R34126.2x25mers.hg38.unique.MACS2_peaks.narrowPeak 0 R34126.2x25mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes R34126.2x25mers.hg38.unique.MACS2_peaks.narrowPeak.RPM -RPM -uniqueBAM &
python ~/code/bedRPKMfromBAM.py R34126.2x25mers.hg38.unique.maxFL120bp.MACS2_peaks.narrowPeak 0 R34126.2x25mers.hg38.unique.maxFL120bp.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes R34126.2x25mers.hg38.unique.maxFL120bp.MACS2_peaks.narrowPeak.RPM -RPM -uniqueBAM &
python ~/code/bedRPKMfromBAM.py R34126.2x25mers.hg38.unique.minFL150bp.MACS2_peaks.narrowPeak 0 R34126.2x25mers.hg38.unique.minFL150bp.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes R34126.2x25mers.hg38.unique.minFL150bp.MACS2_peaks.narrowPeak.RPM -RPM -uniqueBAM &
python ~/code/bedRPKMfromBAM.py R34312.2x25mers.hg38.unique.MACS2_peaks.narrowPeak 0 R34312.2x25mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes R34312.2x25mers.hg38.unique.MACS2_peaks.narrowPeak.RPM -RPM -uniqueBAM &
python ~/code/bedRPKMfromBAM.py R34312.2x25mers.hg38.unique.maxFL120bp.MACS2_peaks.narrowPeak 0 R34312.2x25mers.hg38.unique.maxFL120bp.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes R34312.2x25mers.hg38.unique.maxFL120bp.MACS2_peaks.narrowPeak.RPM -RPM -uniqueBAM &
python ~/code/bedRPKMfromBAM.py R34312.2x25mers.hg38.unique.minFL150bp.MACS2_peaks.narrowPeak 0 R34312.2x25mers.hg38.unique.minFL150bp.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes R34312.2x25mers.hg38.unique.minFL150bp.MACS2_peaks.narrowPeak.RPM -RPM -uniqueBAM &
python ~/code/bedRPKMfromBAM.py R34313.2x25mers.hg38.unique.MACS2_peaks.narrowPeak 0 R34313.2x25mers.hg38.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes R34313.2x25mers.hg38.unique.MACS2_peaks.narrowPeak.RPM -RPM -uniqueBAM &
python ~/code/bedRPKMfromBAM.py R34313.2x25mers.hg38.unique.maxFL120bp.MACS2_peaks.narrowPeak 0 R34313.2x25mers.hg38.unique.maxFL120bp.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes R34313.2x25mers.hg38.unique.maxFL120bp.MACS2_peaks.narrowPeak.RPM -RPM -uniqueBAM &
python ~/code/bedRPKMfromBAM.py R34313.2x25mers.hg38.unique.minFL150bp.MACS2_peaks.narrowPeak 0 R34313.2x25mers.hg38.unique.minFL150bp.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes R34313.2x25mers.hg38.unique.minFL150bp.MACS2_peaks.narrowPeak.RPM -RPM -uniqueBAM &