INPUT PARAMETERS: Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/mm10.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/mm10/female.mm10.chrom.sizes', e4='PeakXus', fastq='GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='GATA1_G1E-ER4_24h_Rep3-GSM1689019/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)INPUT PARAMETERS: Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/mm10.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes', e4='PeakXus', fastq='GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='GATA1_G1E-ER4_24h_Rep3-GSM1689019/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done! Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.521944999695 s Creating peak regions... Creating peak regions took 29.2585220337 s Estimating background... Estimating background took 0.361879825592 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.40448307991 s Creating peak regions... Creating peak regions took 26.5702979565 s Estimating background... Estimating background took 0.412910223007 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.448352813721 s Creating peak regions... Creating peak regions took 26.2624099255 s Estimating background... Estimating background took 0.316750049591 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.396780967712 s Creating peak regions... Creating peak regions took 26.0674648285 s Estimating background... Estimating background took 0.324015855789 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.452220916748 s Creating peak regions... Creating peak regions took 26.7228939533 s Estimating background... Estimating background took 0.297908067703 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.350954055786 s Creating peak regions... Creating peak regions took 22.6437959671 s Estimating background... Estimating background took 0.32497382164 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.531054019928 s Creating peak regions... Creating peak regions took 23.7677540779 s Estimating background... Estimating background took 0.333783864975 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.349007129669 s Creating peak regions... Creating peak regions took 21.1166069508 s Estimating background... Estimating background took 0.445978879929 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.37203001976 s Creating peak regions... Creating peak regions took 20.4690608978 s Estimating background... Estimating background took 0.354069948196 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.27557516098 s Creating peak regions... Creating peak regions took 14.1413009167 s Estimating background... Estimating background took 0.347812891006 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.877888917923 s Creating peak regions... Creating peak regions took 43.9235389233 s Estimating background... Estimating background took 0.593039035797 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.0943439006805 s Creating peak regions... Creating peak regions took 0.156680107117 s Estimating background... Estimating background took 0.295808076859 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.0587229728699 s Creating peak regions... Creating peak regions took 0.307785987854 s Estimating background... Estimating background took 0.302768945694 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.0569200515747 s Creating peak regions... Creating peak regions took 0.182913064957 s Estimating background... Estimating background took 0.289381980896 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.0407340526581 s Creating peak regions... Creating peak regions took 0.244407176971 s Estimating background... Estimating background took 0.313216924667 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.825150966644 s Creating peak regions... Creating peak regions took 39.6928789616 s Estimating background... Estimating background took 3.76781201363 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.576899051666 s Creating peak regions... Creating peak regions took 39.092236042 s Estimating background... Estimating background took 0.381827116013 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.547983169556 s Creating peak regions... Creating peak regions took 36.7125968933 s Estimating background... Estimating background took 0.381337881088 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.133027791977 s Creating peak regions... Creating peak regions took 0.0638880729675 s Estimating background... Estimating background took 0.287801980972 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.609207868576 s Creating peak regions... Creating peak regions took 33.3138279915 s Estimating background... Estimating background took 0.403723955154 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.0272288322449 s Creating peak regions... Creating peak regions took 0.448323965073 s Estimating background... Estimating background took 0.31233716011 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.742239952087 s Creating peak regions... Creating peak regions took 36.2345840931 s Estimating background... Estimating background took 0.541907072067 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.835103988647 s Creating peak regions... Creating peak regions took 35.1079778671 s Estimating background... Estimating background took 0.52444601059 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.360311031342 s Creating peak regions... Creating peak regions took 28.8649220467 s Estimating background... Estimating background took 0.424520015717 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.660247802734 s Creating peak regions... Creating peak regions took 28.127423048 s Estimating background... Estimating background took 0.405364990234 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.107250928879 s Creating peak regions... Creating peak regions took 0.060448884964 s Estimating background... Estimating background took 0.310623168945 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.0387139320374 s Creating peak regions... Creating peak regions took 0.0545768737793 s Estimating background... Estimating background took 0.321504116058 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.055682182312 s Creating peak regions... Creating peak regions took 0.0390799045563 s Estimating background... Estimating background took 0.33069896698 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.0578720569611 s Creating peak regions... Creating peak regions took 0.0602369308472 s Estimating background... Estimating background took 0.32754278183 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.0758571624756 s Creating peak regions... Creating peak regions took 0.0702149868011 s Estimating background... Estimating background took 0.301301956177 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.0563199520111 s Creating peak regions... Creating peak regions took 0.0342741012573 s Estimating background... Estimating background took 0.330053091049 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.056617975235 s Creating peak regions... Creating peak regions took 0.0379858016968 s Estimating background... Estimating background took 0.329991102219 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.0559480190277 s Creating peak regions... Creating peak regions took 0.0296850204468 s Estimating background... Estimating background took 0.329456090927 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.0334649085999 s Creating peak regions... Creating peak regions took 0.0219609737396 s Estimating background... Estimating background took 0.327507019043 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.0541529655457 s Creating peak regions... Creating peak regions took 0.048905134201 s Estimating background... Estimating background took 0.329284906387 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.0551888942719 s Creating peak regions... Creating peak regions took 0.109441995621 s Estimating background... Estimating background took 0.318605184555 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.0570139884949 s Creating peak regions... Creating peak regions took 0.0445261001587 s Estimating background... Estimating background took 0.31774187088 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.0565750598907 s Creating peak regions... Creating peak regions took 0.0322849750519 s Estimating background... Estimating background took 0.313868045807 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.0601649284363 s Creating peak regions... Creating peak regions took 0.0874621868134 s Estimating background... Estimating background took 0.307055950165 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.0543520450592 s Creating peak regions... Creating peak regions took 0.0210440158844 s Estimating background... Estimating background took 0.299064159393 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.038008928299 s Creating peak regions... Creating peak regions took 0.0295929908752 s Estimating background... Estimating background took 0.311410903931 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.0645999908447 s Creating peak regions... Creating peak regions took 0.0391700267792 s Estimating background... Estimating background took 0.302641153336 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.0549008846283 s Creating peak regions... Creating peak regions took 0.0485379695892 s Estimating background... Estimating background took 0.305964946747 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.064553976059 s Creating peak regions... Creating peak regions took 0.0787239074707 s Estimating background... Estimating background took 0.305862188339 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.0576910972595 s Creating peak regions... Creating peak regions took 0.10115814209 s Estimating background... Estimating background took 0.307885885239 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.0528991222382 s Creating peak regions... Creating peak regions took 0.03165102005 s Estimating background... Estimating background took 0.318722963333 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.0571689605713 s Creating peak regions... Creating peak regions took 0.0390400886536 s Estimating background... Estimating background took 0.299758911133 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.0681190490723 s Creating peak regions... Creating peak regions took 0.16129899025 s Estimating background... Estimating background took 0.303591012955 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.286083936691 s Creating peak regions... Creating peak regions took 39.0169100761 s Estimating background... Estimating background took 0.318083047867 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.0550367832184 s Creating peak regions... Creating peak regions took 0.362503051758 s Estimating background... Estimating background took 0.28085398674 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Reading data took 0.0574629306793 s Creating peak regions... Creating peak regions took 17.4414389133 s Estimating background... Estimating background took 0.298399209976 s Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data... Processing GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam Reading in data...