Index of /kundaje/marinovg/oak/AncientHumans/2025-03-13-revision

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]ENCFF420VPZ.bed_complement.region_length_hist2025-03-18 07:02 89  
[ ]ENCFF420VPZ.genome_fraction2025-03-18 07:00 77  
[ ]ENCFF420VPZ.region_length_hist2025-03-18 06:56 1.8K 
[ ]ENCODE4-cCREs-ENCFF420VPZ.hist2025-03-17 21:48 99  
[ ]ENCODE4-cCREs.hist.files2025-03-17 22:32 545  
[ ]ENCODE4-cCREs.hist.table2025-03-17 22:37 247  
[ ]hg19.bands.conf2025-05-01 12:44 138  
[ ]hg19.ideogram.conf2025-05-01 12:44 464  
[ ]hg19.ideogram.label.conf2025-05-01 12:44 221  
[ ]hg19.ideogram.position.conf2025-05-01 12:44 141  
[ ]hg19.ticks.conf2025-05-01 12:44 623  
[ ]lc_04_aaq_1.0-bp.bed2025-04-05 01:16 189K 
[TXT]lc_04_aaq_1.0-bp.liftOver-greatExportAll.tsv2025-04-05 01:50 5.1M 
[ ]lc_04_aaq_1.0-bp.liftOver.bed2025-04-05 01:17 395K 
[ ]lc_05_aaq_1.0-bp.bed2025-04-05 01:17 131K 
[TXT]lc_05_aaq_1.0-bp.liftOver-greatExportAll.tsv2025-04-05 01:50 3.7M 
[ ]lc_05_aaq_1.0-bp.liftOver.bed2025-04-05 01:17 273K 
[ ]lc_058_aaq_1.0-bp-vs-hg19.refFlat-2012-10-22.nearestTSS2025-05-04 13:29 302K 
[ ]lc_058_aaq_1.0-bp-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist2025-05-05 12:19 19K 
[ ]lc_058_aaq_1.0-bp-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist.hist2025-05-05 12:38 85  
[ ]lc_058_aaq_1.0-bp.bed2025-04-05 01:19 98K 
[TXT]lc_058_aaq_1.0-bp.liftOver-greatExportAll.tsv2025-04-05 01:54 3.2M 
[ ]lc_058_aaq_1.0-bp.liftOver.bed2025-04-05 01:19 204K 
[ ]lc_058_aaq_1.0-bp.liftOver.chr-hist2025-05-04 13:23 238  
[ ]lc_058_aaq_1.0-bp.merged-max1000-vs-hg19.refFlat-2012-10-22.nearestTSS2025-05-05 12:39 287K 
[ ]lc_058_aaq_1.0-bp.merged-max1000-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist2025-05-05 12:40 19K 
[ ]lc_058_aaq_1.0-bp.merged-max1000-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist-vs-ArchaicDerived_SNC_nonsynonymous2025-05-05 13:23 684  
[ ]lc_058_aaq_1.0-bp.merged-max1000-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist-vs-HumanDerived_SNC_nonsynonymous2025-05-05 13:23 681  
[ ]lc_058_aaq_1.0-bp.merged-max1000-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist.hist2025-05-05 12:40 78  
[ ]lc_058_aaq_1.0-bp.merged-max1000.bed2025-05-05 12:38 93K 
[ ]lc_06_aaq_1.0-bp.bed2025-04-05 01:17 94K 
[TXT]lc_06_aaq_1.0-bp.liftOver-greatExportAll.tsv2025-04-05 01:51 3.1M 
[ ]lc_06_aaq_1.0-bp.liftOver.bed2025-04-05 01:17 195K 
[ ]lc_07_aaq_1.0-bp.bed2025-04-05 01:17 69K 
[TXT]lc_07_aaq_1.0-bp.liftOver-greatExportAll.tsv2025-04-05 01:52 2.6M 
[ ]lc_07_aaq_1.0-bp.liftOver.bed2025-04-05 01:18 144K 
[ ]lc_08_aaq_1.0-bp.bed2025-04-05 01:18 51K 
[TXT]lc_08_aaq_1.0-bp.liftOver-greatExportAll.tsv2025-04-05 01:44 2.3M 
[ ]lc_08_aaq_1.0-bp.liftOver.bed2025-04-05 01:18 107K 
[ ]lc_08_aaq_1.0-bp.liftOver.chr-hist2025-05-01 12:44 226  
[ ]lc_08_aaq_1.0-bp.liftOver.chr-hist.log2FC_per_chr_size2025-05-01 12:48 531  
[ ]lc_08_aaq_1.0-bp.liftOver.chr-hist.log2FC_per_variants2025-05-01 12:50 521  
[ ]lc_08_aaq_1.both.conf2025-05-01 12:50 1.3K 
[ ]lc_09_aaq_1.0-bp.bed2025-04-05 01:18 38K 
[TXT]lc_09_aaq_1.0-bp.liftOver-greatExportAll.tsv2025-04-05 01:53 2.0M 
[ ]lc_09_aaq_1.0-bp.liftOver.bed2025-04-05 01:18 79K 
[ ]lc_10_aaq_1.0-bp.bed2025-04-05 01:18 28K 
[TXT]lc_10_aaq_1.0-bp.liftOver-greatExportAll.tsv2025-04-05 01:53 1.7M 
[ ]lc_10_aaq_1.0-bp.liftOver.bed2025-04-05 01:18 57K 
[ ]lc_aaq-ENCODE4-cCREs.hist.files2025-04-05 01:23 895  
[ ]lc_aaq-ENCODE4-cCREs.hist.table2025-04-05 01:24 460  
[ ]log_rpm_data.PCA.PCs2025-03-21 06:27 57K 
[ ]log_rpm_data.PCA.quantNorm.PCs2025-03-21 06:28 57K 
[ ]log_rpm_data.PCA.quantNorm.variance_explained2025-03-21 06:28 20K 
[ ]log_rpm_data.PCA.variance_explained2025-03-21 06:27 21K 
[ ]log_rpm_data.UMAP2025-03-21 06:17 35K 
[ ]log_rpm_data.UMAP.quantNorm2025-03-21 06:18 33K 
[ ]max_pcts.reformatted.0-bp.bed2025-04-05 18:19 1.2M 
[ ]max_pcts.reformatted.0-bp.liftOver.bed2025-04-05 18:19 2.4M 
[ ]max_pcts.reformatted.5000bp_ext.max.conf2025-05-01 12:44 1.1K 
[ ]max_pcts.reformatted.5000bp_ext.max_both_0.95.conf2025-05-01 12:44 1.3K 
[ ]max_pcts.reformatted.5000bp_ext.max_both_0.98.conf2025-05-01 12:44 1.3K 
[ ]max_pcts.reformatted.5000bp_ext.max_both_0.99.conf2025-05-01 12:44 1.3K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.95.0kb.hg38.liftOver-vs-ENCODE4-cCREs-ENCFF420VPZ-intersection2.hist2025-03-17 22:33 69  
[ ]max_pcts.reformatted.5000bp_ext.min_0.98.0kb.hg38.liftOver-vs-ENCODE4-cCREs-ENCFF420VPZ-intersection2.hist2025-03-17 22:33 67  
[ ]max_pcts.reformatted.5000bp_ext.min_0.99.0kb.hg38.liftOver-vs-ENCODE4-cCREs-ENCFF420VPZ-intersection2.hist2025-03-17 22:33 55  
[ ]signed_log10_pvals_clustering_format.5000bp_ext.max2.7.0kb.hg38.liftOver-vs-ENCODE4-cCREs-ENCFF420VPZ-intersection2.hist2025-03-17 22:33 73  
[ ]z2025-04-25 06:30 43K 
Apache/2.4.66 (Ubuntu) Server at mitra.stanford.edu Port 443