Index of /kundaje/marinovg/oak/AncientHumans/2024-09-16-max_pcts-figures

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]01_maxpct_01_pval_002-variant_list-vs-hg19.refFlat-2012-10-22.nearestTSS2025-02-20 21:34 221K 
[ ]01_maxpct_01_pval_002-variant_list-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist2025-02-20 21:36 16K 
[ ]01_maxpct_01_pval_002-variant_list.bed2025-02-19 18:44 71K 
[ ]01_maxpct_01_pval_002-variant_list.bed.chr-hist2025-02-20 21:18 213  
[DIR]Adobe Illustrator 2023 v27.9.5.103 (x64) Multilingual/2025-02-22 02:49 -  
[ ]encodeCcreCombined.hg38.bed.gz2025-02-14 17:23 28M 
[ ]encodeCcreCombined.hg38.hist12025-02-14 17:28 70  
[ ]encodeCcreCombined.hg38.hist22025-02-14 17:28 57  
[ ]enformer_scores_processed.5000bp_ext.max2025-02-15 06:35 1.4M 
[ ]enformer_scores_processed.5000bp_ext.max.cdf2025-02-19 18:21 1.0M 
[ ]enformer_scores_processed.5000bp_ext.max.chr-hist2025-02-19 18:21 239  
[ ]enformer_scores_processed.5000bp_ext.max.conf2025-02-19 18:37 1.1K 
[ ]enformer_scores_processed.5000bp_ext.max_2-fold2025-02-19 18:32 72K 
[ ]enformer_scores_processed.5000bp_ext.max_2-fold.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS2025-02-19 18:42 180K 
[ ]enformer_scores_processed.5000bp_ext.max_2-fold.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist2025-02-19 18:42 44K 
[ ]enformer_scores_processed.5000bp_ext.max_2-fold.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist-genes2025-02-19 18:43 9.8K 
[ ]enformer_scores_processed.5000bp_ext.max_2-fold.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist.CRE-hist2025-02-19 18:42 13K 
[ ]enformer_scores_processed.5000bp_ext.max_2-fold.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist.CRE-hist.hist2025-02-19 18:42 55  
[ ]enformer_scores_processed.5000bp_ext.max_2-fold.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist.hist2025-02-19 18:42 7  
[ ]enformer_scores_processed.5000bp_ext.max_2-fold.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist.neg2025-02-19 18:43 23K 
[ ]enformer_scores_processed.5000bp_ext.max_2-fold.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist.neg-genes2025-02-19 18:43 5.9K 
[ ]enformer_scores_processed.5000bp_ext.max_2-fold.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist.pos2025-02-19 18:43 21K 
[ ]enformer_scores_processed.5000bp_ext.max_2-fold.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist.pos-genes2025-02-19 18:43 5.8K 
[ ]enformer_scores_processed.5000bp_ext.max_2-fold.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist.pos-neg-both2025-02-19 18:43 1.8K 
[ ]enformer_scores_processed.5000bp_ext.max_2-fold.1kb.bed2025-02-19 18:42 72K 
[ ]enformer_scores_processed.5000bp_ext.max_2-fold.1kb.bigBed2025-02-19 18:42 87K 
[ ]enformer_scores_processed.5000bp_ext.max_2-fold.chr-hist2025-02-19 18:33 204  
[ ]enformer_scores_processed.5000bp_ext.max_2-fold.chr-hist.log2FC_per_chr_size2025-02-19 18:36 683  
[ ]enformer_scores_processed.5000bp_ext.max_2-fold.chr-hist.log2FC_per_variants2025-02-19 18:37 681  
[ ]enformer_scores_processed.5000bp_ext.max_both.conf2025-02-19 18:37 1.3K 
[ ]enformer_scores_processed.5000bp_ext.min2025-02-15 06:35 1.4M 
[ ]enformer_scores_processed.atr2025-02-15 01:15 199K 
[ ]enformer_scores_processed.cdt.gz2025-02-15 01:15 665M 
[IMG]enformer_scores_processed.cdt.variants-only2025-02-19 18:21 807K 
[ ]enformer_scores_processed.gtr2025-02-14 22:29 1.7M 
[TXT]enformer_scores_processed.txt2025-01-15 17:27 2.8G 
[ ]genes-overlap-AAQ-vs-AAQ2025-02-20 21:39 12K 
[ ]genes-overlap-AAQ-vs-Enformer2025-02-20 21:38 6.9K 
[ ]genes-overlap-AAQ-vs-OG2025-02-20 21:38 9.6K 
[ ]genes-overlap-Enformer-vs-Enformer2025-02-20 21:39 9.8K 
[ ]genes-overlap-Enformer-vs-OG2025-02-20 21:38 6.0K 
[ ]genes-overlap-OG-vs-OG2025-02-20 21:39 13K 
[TXT]greatExportAll-01_maxpct_01_pval_002-variant_list.tsv2025-02-19 18:46 2.4M 
[TXT]greatExportAll-enformer_scores_processed.5000bp_ext.max_2-fold.1kb.tsv2025-02-19 18:50 2.1M 
[TXT]greatExportAll-signed_log10_pvals_clustering_format.5000bp_ext.max2.7.1kb.tsv2025-02-20 22:20 3.2M 
[ ]greatExportAll.files2025-02-20 22:40 242  
[ ]greatExportAll.table2025-02-20 22:40 455K 
[ ]hg19.bands.conf2025-02-13 21:32 138  
[ ]hg19.ideogram.conf2025-02-13 21:32 464  
[ ]hg19.ideogram.label.conf2025-02-13 21:32 221  
[ ]hg19.ideogram.position.conf2025-02-13 21:32 141  
[ ]hg19.ticks.conf2025-02-13 21:32 623  
[ ]max_pcts.reformatted.5000bp_ext.files2025-02-13 21:12 38K 
[ ]max_pcts.reformatted.5000bp_ext.max2025-02-13 21:16 1.6M 
[ ]max_pcts.reformatted.5000bp_ext.max.cdf2025-02-14 16:30 1.2M 
[ ]max_pcts.reformatted.5000bp_ext.max.chr-hist2025-02-13 21:28 240  
[ ]max_pcts.reformatted.5000bp_ext.max.conf2025-02-13 21:33 1.1K 
[ ]max_pcts.reformatted.5000bp_ext.max_both_0.95.conf2025-02-14 16:25 1.3K 
[ ]max_pcts.reformatted.5000bp_ext.max_both_0.98.conf2025-02-14 16:25 1.3K 
[ ]max_pcts.reformatted.5000bp_ext.max_both_0.99.conf2025-02-13 21:33 1.3K 
[ ]max_pcts.reformatted.5000bp_ext.min2025-02-13 21:22 1.5M 
[ ]max_pcts.reformatted.5000bp_ext.min_0.952025-02-14 16:23 46K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.95.0kb.bed2025-02-14 17:22 46K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.95.0kb.hg38.liftOver-vs-encodeCcreCombined.hg38-intersection12025-02-14 17:28 39K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.95.0kb.hg38.liftOver-vs-encodeCcreCombined.hg38-intersection22025-02-14 17:28 140K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.95.0kb.hg38.liftOver-vs-encodeCcreCombined.hg38-intersection2.hist12025-02-14 17:28 54  
[ ]max_pcts.reformatted.5000bp_ext.min_0.95.0kb.hg38.liftOver-vs-encodeCcreCombined.hg38-intersection2.hist22025-02-14 17:28 41  
[ ]max_pcts.reformatted.5000bp_ext.min_0.95.0kb.hg38.liftOver-vs-encodeCcreCombined.hg38-outersection12025-02-14 17:28 18K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.95.0kb.hg38.liftOver.bed2025-02-14 17:26 57K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.95.0kb.merged-max1000-vs-hg19.refFlat-2012-10-22.nearestTSS2025-02-14 17:22 84K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.95.0kb.merged-max1000-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist2025-02-14 17:22 9.2K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.95.0kb.merged-max1000-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist-hist2025-02-14 17:22 20  
[ ]max_pcts.reformatted.5000bp_ext.min_0.95.0kb.merged-max1000.bed2025-02-14 17:22 28K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.95.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS2025-02-14 17:50 114K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.95.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist2025-02-14 17:51 28K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.95.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist-genes2025-02-14 17:51 7.1K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.95.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist-vs-ArchaicDerived_SNC_nonsynonymous2025-02-14 17:51 316  
[ ]max_pcts.reformatted.5000bp_ext.min_0.95.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist-vs-HumanDerived_SNC_nonsynonymous2025-02-14 17:51 244  
[ ]max_pcts.reformatted.5000bp_ext.min_0.95.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist.CRE-hist2025-02-14 17:51 9.2K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.95.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist.CRE-hist.hist2025-02-14 17:51 39  
[ ]max_pcts.reformatted.5000bp_ext.min_0.95.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist.hist2025-02-14 17:51 15  
[ ]max_pcts.reformatted.5000bp_ext.min_0.95.1kb.bed2025-02-14 17:10 46K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.95.1kb.bigBed2025-02-14 17:10 59K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.95.chr-hist2025-02-14 16:24 200  
[ ]max_pcts.reformatted.5000bp_ext.min_0.95.chr-hist.log2FC_per_chr_size2025-02-14 16:28 686  
[ ]max_pcts.reformatted.5000bp_ext.min_0.95.chr-hist.log2FC_per_variants2025-02-14 16:28 686  
[ ]max_pcts.reformatted.5000bp_ext.min_0.982025-02-14 16:23 19K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.98.0kb.bed2025-02-14 17:21 19K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.98.0kb.hg38.liftOver-vs-encodeCcreCombined.hg38-intersection12025-02-14 17:28 17K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.98.0kb.hg38.liftOver-vs-encodeCcreCombined.hg38-intersection22025-02-14 17:28 60K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.98.0kb.hg38.liftOver-vs-encodeCcreCombined.hg38-intersection2.hist12025-02-14 17:28 42  
[ ]max_pcts.reformatted.5000bp_ext.min_0.98.0kb.hg38.liftOver-vs-encodeCcreCombined.hg38-intersection2.hist22025-02-14 17:28 34  
[ ]max_pcts.reformatted.5000bp_ext.min_0.98.0kb.hg38.liftOver-vs-encodeCcreCombined.hg38-outersection12025-02-14 17:28 6.2K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.98.0kb.hg38.liftOver.bed2025-02-14 17:26 23K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.98.0kb.merged-max1000-vs-hg19.refFlat-2012-10-22.nearestTSS2025-02-14 17:22 34K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.98.0kb.merged-max1000-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist2025-02-14 17:22 4.0K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.98.0kb.merged-max1000-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist-hist2025-02-14 17:22 19  
[ ]max_pcts.reformatted.5000bp_ext.min_0.98.0kb.merged-max1000.bed2025-02-14 17:22 11K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.98.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS2025-02-14 17:50 47K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.98.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist2025-02-14 17:51 11K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.98.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist-genes2025-02-14 17:51 3.1K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.98.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist-vs-ArchaicDerived_SNC_nonsynonymous2025-02-14 17:51 179  
[ ]max_pcts.reformatted.5000bp_ext.min_0.98.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist-vs-HumanDerived_SNC_nonsynonymous2025-02-14 17:51 130  
[ ]max_pcts.reformatted.5000bp_ext.min_0.98.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist.CRE-hist2025-02-14 17:51 4.0K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.98.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist.CRE-hist.hist2025-02-14 17:51 31  
[ ]max_pcts.reformatted.5000bp_ext.min_0.98.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist.hist2025-02-14 17:51 14  
[ ]max_pcts.reformatted.5000bp_ext.min_0.98.1kb.bed2025-02-14 17:10 19K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.98.1kb.bigBed2025-02-14 17:10 46K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.98.chr-hist2025-02-14 16:24 195  
[ ]max_pcts.reformatted.5000bp_ext.min_0.98.chr-hist.log2FC_per_chr_size2025-02-14 16:29 683  
[ ]max_pcts.reformatted.5000bp_ext.min_0.98.chr-hist.log2FC_per_variants2025-02-14 16:29 681  
[ ]max_pcts.reformatted.5000bp_ext.min_0.992025-02-13 21:28 11K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.99.0kb.bed2025-02-14 17:21 11K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.99.0kb.hg38.liftOver-vs-encodeCcreCombined.hg38-intersection12025-02-14 17:28 9.7K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.99.0kb.hg38.liftOver-vs-encodeCcreCombined.hg38-intersection22025-02-14 17:28 34K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.99.0kb.hg38.liftOver-vs-encodeCcreCombined.hg38-intersection2.hist12025-02-14 17:28 40  
[ ]max_pcts.reformatted.5000bp_ext.min_0.99.0kb.hg38.liftOver-vs-encodeCcreCombined.hg38-intersection2.hist22025-02-14 17:28 32  
[ ]max_pcts.reformatted.5000bp_ext.min_0.99.0kb.hg38.liftOver-vs-encodeCcreCombined.hg38-outersection12025-02-14 17:28 3.3K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.99.0kb.hg38.liftOver.bed2025-02-14 17:25 13K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.99.0kb.merged-max1000-vs-hg19.refFlat-2012-10-22.nearestTSS2025-02-14 17:22 19K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.99.0kb.merged-max1000-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist2025-02-14 17:22 2.3K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.99.0kb.merged-max1000-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist-hist2025-02-14 17:22 10  
[ ]max_pcts.reformatted.5000bp_ext.min_0.99.0kb.merged-max1000.bed2025-02-14 17:22 6.3K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.99.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS2025-02-14 17:50 27K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.99.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist2025-02-14 17:50 6.5K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.99.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist-genes2025-02-14 17:50 1.8K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.99.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist-vs-ArchaicDerived_SNC_nonsynonymous2025-02-14 17:51 101  
[ ]max_pcts.reformatted.5000bp_ext.min_0.99.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist-vs-HumanDerived_SNC_nonsynonymous2025-02-14 17:51 89  
[ ]max_pcts.reformatted.5000bp_ext.min_0.99.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist.CRE-hist2025-02-14 17:50 2.3K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.99.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist.CRE-hist.hist2025-02-14 17:50 31  
[ ]max_pcts.reformatted.5000bp_ext.min_0.99.1kb-vs-hg19.refFlat-2012-10-22.nearestTSS.gene-variant-hist.hist2025-02-14 17:50 14  
[ ]max_pcts.reformatted.5000bp_ext.min_0.99.1kb.bed2025-02-14 17:10 11K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.99.1kb.bigBed2025-02-14 17:10 33K 
[ ]max_pcts.reformatted.5000bp_ext.min_0.99.chr-hist2025-02-13 21:28 189  
[ ]max_pcts.reformatted.5000bp_ext.min_0.99.chr-hist.log2FC_per_chr_size2025-02-13 21:34 685  
[ ]max_pcts.reformatted.5000bp_ext.min_0.99.chr-hist.log2FC_per_variants2025-02-13 21:34 683  
[ ]max_pcts.reformatted.atr2025-01-16 00:55 38K 
[ ]max_pcts.reformatted.cdt.gz2025-01-16 00:56 169M 
[IMG]max_pcts.reformatted.cdt.variants-only2025-02-13 21:27 927K 
[ ]max_pcts.reformatted.gtr2025-01-16 00:46 2.0M 
[TXT]max_pcts.reformatted.tsv2025-01-15 18:18 1.0G 
[ ]number_variants_per_gene.files2025-02-14 17:48 681  
[ ]number_variants_per_gene.reformat.2D-hist-0-3-min-0.952025-02-14 17:57 251  
[ ]number_variants_per_gene.reformat.2D-hist-0-3-min-0.982025-02-14 17:57 251  
[ ]number_variants_per_gene.reformat.2D-hist-0-3-min-0.992025-02-14 17:57 251  
[ ]number_variants_per_gene.reformat.table2025-02-14 17:55 54K 
[ ]number_variants_per_gene.table2025-02-14 17:51 50K 
[TXT]reformat.py2025-01-15 18:17 1.4K 
[ ]z2025-02-20 22:39 374K 
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